maint_debian-med package set for unstable/armhf

• All tracked package sets for unstable/armhf

The package set maint_debian-med in unstable/armhf consists of 976 packages:
31 (3.2%) packages failed to build reproducibly: metastudent-data pyscanfcs pycorrfit treeview dicom3tools segemehl libpll parallel hmmer gbrowse filtlong libamplsolver python-pysam shapeit4 liblemon twopaco libsbml dcmtk gdcm ncbi-blast+ python-trx-python libcifpp igraph heudiconv altree pyqi libhmsbeagle nitime dipy minimap2 librostlab
46 (4.7%) packages failed to build from source: libbioparser-dev acedb ball ismrmrd# mlv-smile parsinsert intake bbhash gjh-asl-json maude toil python-parasail libmaus2 unifrac-tools bifrost q2cli seqan-raptor pychopper python-mne flye abpoa pyranges ugene python-bcbio-gff openslide-python obitools augur simde python-dnaio pbsim nim-hts ray seqan3 ncbi-igblast bustools btllib pydicom minc-tools cmtk pynn python-anndata python-pbcore+# mia kmc ivar mcl
170 (17.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 subarch-select libgenome-model-tools-music-perl mapsembler2 salmon mrtrix3 canu pftools theseus bio-eagle q2-phylogeny swarm-cluster probabel mmseqs2 soapaligner megahit kissplice soapdenovo2 trinityrnaseq kma libstatgen python-cooler mindthegap macsyfinder ncbi-vdb sra-sdk metabat vg mecat2 elastix kallisto iqtree xenium bmtk discosnp libvcflib sortmerna fis-gtm soapdenovo insighttoolkit5 embassy-domsearch barrnap embassy-domalign plastimatch transdecoder psortb anfo pbbam freebayes resfinder-db qcumber crac smrtanalysis king consensuscore proteinortho fsm-lite python-cogent ntcard emperor metaeuk python-skbio surankco spades rapmap minia gdpc iitii wtdbg2 deblur gasic kleborate seqsero skesa q2-quality-filter q2-feature-classifier kmerresistance q2-metadata pilon shovill mash embassy-domainatrix beagle pizzly q2-dada2 bcalm simka snap-aligner gatb-core python-loompy libmmmulti plasmidid infernal rockhopper sambamba genomicsdb nthash gubbins bowtie2 camitk cat-bat biobambam2 bolt-lmm diamond-aligner bowtie pbcopper artemis chromhmm tipp metaphlan pplacer q2-cutadapt rsem minimac4 parallel-fastq-dump q2-taxa kraken quorum q2-fragment-insertion sspace q2-quality-control q2-feature-table libgoby-java q2-alignment q2-demux libwfa2 q2-types q2-emperor sight q2-diversity-lib emboss umap-learn jellyfish1 python-array-api-compat busco srst2 circlator shasta spaln htsjdk prime-phylo libatomic-queue unicycler fastqc python-iow ants itkgenericlabelinterpolator ariba blasr snippy pbdagcon jellyfish abyss pigx-rnaseq drop-seq libhttp-nio-java rna-star paleomix snpsift snpeff sepp unifrac pbseqlib igv vsearch seqan-needle python-ete3 itkadaptivedenoising centrifuge picard-tools
729 (74.7%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor illustrate imagej imbalanced-learn indelible insilicoseq invesalius ipig iva jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mauve-aligner maxflow mcaller mcl14 medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib miniasm minimap mipe mira mirtop mmlib mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy nipype njplot norsnet norsp nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pymia pynwb pyode pysurfer python-alignlib python-awkward python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.