maint_debian-med package set for unstable/armhf

• All tracked package sets for unstable/armhf

The package set maint_debian-med in unstable/armhf consists of 962 packages:
30 (3.1%) packages failed to build reproducibly: metastudent-data pyscanfcs pycorrfit treeview dicom3tools segemehl libpll parallel hmmer gbrowse filtlong python-pysam shapeit4 liblemon twopaco gdcm ncbi-blast+ python-trx-python heudiconv altree libhmsbeagle nitime dipy minimap2 librostlab libamplsolver libsbml dcmtk igraph libcifpp
44 (4.6%) packages failed to build from source: seqan-raptor pychopper python-mne flye abpoa pyranges python-bcbio-gff openslide-python augur simde python-dnaio pbsim nim-hts ray cmtk pynn python-pbcore+ python-anndata obitools mia kmc ivar vtk-dicom pydicom ugene praat seqan3 ncbi-igblast libbioparser-dev ball acedb ismrmrd# parsinsert mlv-smile bbhash gjh-asl-json maude toil python-parasail libmaus2 unifrac-tools bifrost bustools btllib
178 (18.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 mmseqs2 soapaligner megahit kissplice soapdenovo2 trinityrnaseq kma libstatgen mindthegap macsyfinder ncbi-vdb sra-sdk metabat vg mecat2 elastix kallisto iqtree xenium bmtk discosnp libvcflib sortmerna fis-gtm soapdenovo insighttoolkit5 spades minia gdpc wtdbg2 mash bcalm simka snap-aligner gatb-core python-loompy infernal bolt-lmm diamond-aligner bowtie pbcopper jellyfish1 shasta spaln subarch-select cde mapsembler2 salmon mrtrix3 python-cooler canu deblur surankco rapmap iitii kleborate gasic pftools skesa seqsero q2-quality-filter q2-feature-classifier kmerresistance q2-metadata pilon shovill cnvkit bowtie2 gubbins embassy-domainatrix libmmmulti beagle q2-dada2 camitk sambamba plasmidid rockhopper biobambam2 cat-bat chromhmm pizzly rsem tipp pplacer artemis busco minimac4 metaphlan q2-cutadapt parallel-fastq-dump kraken quorum nthash q2-feature-table q2-types libgoby-java q2-alignment q2-fragment-insertion libwfa2 q2-quality-control q2-taxa sight sspace q2-demux q2-emperor q2-diversity-lib python-array-api-compat emboss umap-learn srst2 theseus bio-eagle circlator mcl blasr libatomic-queue python-iow ants fastqc itkgenericlabelinterpolator snippy pbdagcon jellyfish unicycler prime-phylo ariba abyss barrnap smrtanalysis embassy-domsearch swarm-cluster intake q2templates orthanc-python q2-phylogeny q2-sample-classifier q2cli embassy-domalign anfo king pymia resfinder-db transdecoder consensuscore pbbam plastimatch freebayes qcumber picard-tools psortb crac fsm-lite htsjdk proteinortho python-cogent libhttp-nio-java ntcard drop-seq pigx-rnaseq rna-star paleomix snpsift metaeuk unifrac snpeff igv pbseqlib python-skbio sepp vsearch seqan-needle emperor genomicsdb sourmash python-ete3 centrifuge itkadaptivedenoising
710 (73.8%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bandage bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor illustrate imagej imbalanced-learn indelible insilicoseq invesalius ipig iva jaligner jam-lib jebl2 jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhat-trie libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libslow5lib libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mauve-aligner maxflow mcaller mcl14 medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib minc-tools miniasm minimap mipe mira mirtop mmlib mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy nipype njplot norsnet norsp nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml paraclu parafly parasail parsnp paryfor patman patsy pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pynwb pyode pyqi pysurfer python-alignlib python-awkward python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cobra python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pauvre python-pbcommand python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat qcat qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simrisc ska smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.