maint_debian-med package set for bullseye/armhf
Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:
-
maint_debian-accessibility
-
maint_debian-boot
-
maint_debian-lua
-
maint_debian-med
-
maint_debian-ocaml
-
maint_debian-python
-
maint_debian-qa
-
maint_debian-science
-
maint_debian-x
-
maint_pkg-android-tools-devel
-
maint_pkg-fonts-devel
-
maint_pkg-games-devel
-
maint_pkg-golang-maintainers
-
maint_pkg-grass-devel
-
maint_pkg-haskell-maintainers
-
maint_pkg-java-maintainers
-
maint_pkg-javascript-devel
-
maint_pkg-multimedia-maintainers
-
maint_pkg-perl-maintainers
-
maint_pkg-php-pear
-
maint_pkg-openstack
-
maint_pkg-ruby-extras-maintainers
The package set maint_debian-med in
bullseye/armhf consists of 651 packages:
36 (5.5%) packages
failed to build reproducibly:
mira
sleepyhead
libsbml
mummer
flexbar
mothur
lambda-align
treeview
librcsb-core-wrapper
libgclib
gdcm
orthanc
bart
phast
loki
snakemake+
orthanc-dicomweb
orthanc-webviewer
ncbi-blast+
emboss
jmodeltest
libzeep
ffindex
htslib##
raster3d
segemehl
mcl
python-biopython
shapeit4
metastudent-data
microbiomeutil
fastp
dicom3tools
librostlab
mapsembler2
parsinsert#
22 (3.4%) packages
failed to build from source:
libsis-base-java
gemma
mia
ismrmrd#
python-easydev
pbbam#
seqan2
gffread
python-xopen
gatb-core
bali-phy
ngs-sdkP
cwltool
ncbi-entrez-direct
logol
bppphyview
qtltools
qiime
python-pysam
libundead
prime-phylo
ball
98 (15.1%) packages
are either in depwait state, blacklisted, not for us, or cannot be downloaded:
rna-star
plast
fis-gtm
infernal#
circlator
hisat2
soapdenovo2
relion
swarm-cluster
mmseqs2
kissplice
bio-eagle
soapaligner
libstatgen
snap-aligner#
artemis
picard-tools
diamond-aligner
insighttoolkit4
sortmerna
cnvkit
rapmap
consensuscore
bowtie
bowtie2#
jellyfish
bwa
pftools
libssw
nanopolish
examl
spoa
sra-sdk
praat
fermi-lite
khmer
parafly
bolt-lmm
raxml
vsearch
mapdamage
soapdenovo
hhsuite
obitools
python-sqt
mhap
canu
barrnap
spades
macsyfinder
fsm-lite
htsjdk
proteinortho
surankco
gubbins
fitgcp
centrifuge
iva
ncbi-vdb
srst2
python-pbcore
qcumber
libvcflib
seqsero
fastqc
crac
libseqlib
racon
giira
chromhmm
sspace
sga
minimac4
metaphlan2
rsem
htseq
psortb
pbseqlib
quorum
pilon
blasr
freebayes
tophat
hinge
python-pybedtools
pbdagcon
bcbio
python-gffutils
salmon
trinityrnaseq
bioperl-run
paleomix
gasic
umis
ariba
beagle
skesa
atropos
495 (76.0%) packages
successfully build reproducibly:
abacas
abyss
acedb
adapterremoval
adun.app
aegean
aeskulap
aevol
alien-hunter
alter-sequence-alignment
altree
amap-align
amide
ampliconnoise
andi
anfo
aragorn
arden
artfastqgenerator
art-nextgen-simulation-tools
assemblytics
augustus
autodocksuite
autodock-vina
axe-demultiplexer
baitfisher
bambamc
bamtools
bandage
bart-view
bbmap
bcftools###
beads
beast2-mcmc
beast-mcmc
bedops
bedtools
berkeley-express
biococoa
biojava4-live
biojava-live
biomaj3
biomaj3-cli
biomaj3-core
biomaj3-daemon
biomaj3-download
biomaj3-process
biomaj3-user
biomaj3-zipkin
bioperl
bio-rainbow
biosquid
biosyntax
bio-tradis
bitseq
boxshade
bppsuite
brig
cain
camp
cassiopee
cct
cdbfasta
cd-hit
cgview
changeo
charls
chromimpute
ciftilib
circos
circos-tools
clearcut
clonalframe
clonalframeml
clonalorigin
clustalo
clustalw
clustalx
codonw
coils
concavity
conservation-code
ctdconverter
ctdopts
ctn
ctsim
cycle
cyvcf2
daligner
dascrubber
dawg
dazzdb
dcm2niix
dcmtk
debian-med
deepnano
delly
dialign
dialign-t
dicompyler
dicomscope
dindel
disulfinder
dnaclust
dssp
dwgsim
ea-utils
ecopcr
edfbrowser
edflib
edtsurf
eigensoft
elph
embassy-domainatrix
embassy-domalign
embassy-domsearch
emboss-explorer
e-mem
emmax
epcr
epigrass
estscan
exonerate
fast5
fastaq
fastdnaml
fastlink
fastml
fastqtl
fasttree
figtree
freecontact
fsa
g2
galileo
garli
gdpc
genometester
genometools
gentle
getdata
gfapy
gff2aplot
gff2ps
ghmm
glam2
gnumed-server
golang-github-dataence-porter2
grabix
graphlan
grinder
gwama
gwyddion
harvest-tools
hilive
hmmer2
hunspell-en-med
hyphy
idba
igor
igraph
imagej
indelible
invesalius
ipig
jaligner
jam-lib
jebl2
jellyfish1
jheatchart
kalign
kallisto
king
king-probe
kma
kmc
kmer
kmerresistance
kraken
kraken2
lagan
lamarc
lambda-align2
last-align
lefse
libace-perl
libbio-coordinate-perl
libbio-das-lite-perl
libbio-graphics-perl
libbio-mage-perl
libbio-mage-utils-perl
libbioparser-dev
libbpp-core
libbpp-phyl
libbpp-phyl-omics
libbpp-popgen
libbpp-qt
libbpp-raa
libbpp-seq
libbpp-seq-omics
libcereal
libchado-perl
libcolt-free-java
libctapimkt
libdeflate
libdisorder
libdivsufsort
libedlib
libfastahack
libfreecontact-perl
libgenome
libgenome-model-tools-music-perl
libgenome-perl
libgff
libgkarrays
libgo-perl
libgzstream
libhac-java
libhat-trie
libhmsbeagle
libhpptools
libics
libjbzip2-java
libjloda-java
libjung-free-java
libkmlframework-java
libmems
libmialm
libminc
libmurmurhash
libmuscle
libncl
liboptions-java
libpal-java
libpll
libpsortb
libqes
libquazip
librandom123
librdp-taxonomy-tree-java
librg-blast-parser-perl
librg-exception-perl
librg-utils-perl
librostlab-blast
libsmithwaterman
libsort-key-top-perl
libtabixpp
libtecla
libtfbs-perl
libthread-pool
libvistaio
libxdf
libzerg
libzerg-perl
libzstd
ltrsift
lucy
macs
maffilter
mafft
maq
maqview
mash
maude
mauve-aligner
maxflow
medicalterms
melting
mencal
metaphlan2-data
metastudent
metastudent-data-2
mialmpick
miaviewit
microbegps
milib
minc-tools
minia
miniasm
minimap
minimap2
mipe
mlv-smile
mptp
mrbayes
mriconvert
mrs
murasaki
muscle
mustang
mypy
nanook
ncbi-seg
ncbi-tools6
neobio
njplot
norsp
nutsqlite
odil
openslide
openslide-python
optimir
orthanc-imagej
orthanc-mysql
orthanc-postgresql
orthanc-wsi
pal2nal
paml
papyrus
paraclu
parsnp
patman
pbcopper
pbsim
pcalendar
perlprimer
perm
phipack
phybin
phylip
phyml
physamp
phyutility
phyx
piler
pilercr
pirs
pixelmed
pixelmed-codec
placnet
plasmidomics
plasmidseeker
plink
plink1.9
plip
poa
populations
porechop
poretools
pp-popularity-contest
prank
predictnls
primer3
proalign
probabel
probalign
probcons
proda
prodigal
profphd-utils
proftmb
progressivemauve
prottest
pscan-chip
pscan-tfbs
pvrg-jpeg
pycorrfit
pymia
pynast
pyqi
pyscanfcs
python3-typed-ast
python-avro
python-biom-format
python-biotools
python-bx
python-bz2file
python-cgecore
python-cobra
python-cogent
python-colormap
python-colormath
python-csb
python-cutadapt
python-dendropy
python-depinfo
python-dnaio
python-fitbit
python-freecontact
python-geneimpacts
python-hdmedians
python-hl7
python-lzstring
python-matplotlib-venn
python-multipletau
python-mypy-extensions
python-pipdeptree
python-py2bit
python-pycosat
python-pyfaidx
python-pyflow
python-pymummer
python-pyvcf
python-rdflib-jsonld
python-ruffus
python-schema-salad
python-screed
python-spectra
python-sqlsoup
python-treetime
q2cli
qrisk2
qsopt-ex
radiant
rambo-k
rampler
rate4site
ray
rdp-alignment
rdp-classifier
rdp-readseq
readseq
reapr
repeatmasker-recon
reprof
rnahybrid
roary
roguenarok
rtax
ruby-rgfa
runcircos-gui
saint
salmid
samblaster
samtools
samtools-legacy
sbmltoolbox
scoary
scrm
scythe
seaview
seer
seqan
seqmagick
seqprep
seqtk
seqtools
sibsim4
sickle
sigma-align
sim4
smalt
snap
sniffles
snpomatic
snp-sites
soapsnp
socket++
spaced
spdlog
sphinxcontrib-autoprogram
sprai
spread-phy
squizz
srf
ssake
stacks
staden
staden-io-lib
subread
suitename
sumaclust
sumatra
sweed
swissknife
tantan
t-coffee
theseus
tifffile
tigr-glimmer
tm-align+
toil
toppred
trace2dbest
tracetuner
transdecoder
transrate-tools
transtermhp
tree-puzzle
treeviewx
trimmomatic
tvc
uc-echo
varna
vcftools
velvet
velvetoptimiser
virulencefinder
volpack
vtk-dicom
wise
xmedcon
yaggo
yaha
zalign
A package name displayed with a bold
font is an indication that this package has a note. Visited
packages are linked in green, those which have not been visited are
linked in blue.
A #
sign after the name of a package
indicates that a bug is filed against it. Likewise, a
+
sign indicates there is a
patch available, a P
means a
pending bug while #
indicates a
closed bug. In cases of several bugs, the symbol is repeated.