maint_debian-med package set for bullseye/armhf

• All tracked package sets for bullseye/armhf

The package set maint_debian-med in bullseye/armhf consists of 655 packages:
36 (5.5%) packages failed to build reproducibly: dicom3tools python-biopython metastudent-data grabix microbiomeutil mapsembler2 librostlab segemehl mira fastp mummer orthanc-webviewer fastx-toolkit orthanc lambda-align librcsb-core-wrapper treeview sleepyhead gbrowse mothur gdcm libsbml phast loki bart ncbi-blast+ jmodeltest emboss pixelmed flexbar logol mcl htslib macs porechop raster3d
15 (2.3%) packages failed to build from source: qtltools python-pysam libsis-base-java ismrmrd seqan2 pbbam gatb-core ngs-sdk bali-phy libmurmurhash qiime libundead ball jellyfish pbcopper
89 (13.6%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: hhsuite fermi-lite khmer kissplice parafly raxml soapdenovo elastix plast bolt-lmm fis-gtm infernal bowtie2 libssw soapdenovo2 hisat2 relion hmmer swarm-cluster bio-eagle soapaligner spoa libstatgen obitools insighttoolkit4 snap-aligner picard-tools circlator artemis sortmerna consensuscore cnvkit bwa pftools vsearch python-skbio rna-star examl nanopolish praat bowtie diamond-aligner fitgcp gubbins python-pbcore htsjdk spades deepnano chromhmm kineticstools seqsero python-pbcommand giira htseq libseqlib iva metaphlan2 minimac4 quorum smalr psortb racon unanimity unicycler ginkgocadx pbgenomicconsensus bioperl-run freebayes pbbarcode blasr pbalign salmon pilon beagle trinityrnaseq pbdagcon rapmap pbseqlib hinge python-pybedtools simpleitk bcbio umis ariba paleomix python-gffutils macsyfinder iqtree sra-sdk
515 (78.6%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden artfastqgenerator art-nextgen-simulation-tools assemblytics augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamtools bandage bart-view bcftools beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosquid biosyntax bio-tradis bitseq boxshade bppphyview bppsuite brig cain camp cassiopee cct cdbfasta cd-hit cfflib cgview changeo charls chromimpute ciftilib circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity conservation-code ctdconverter ctdopts ctn ctsim cwltool cycle cyvcf2 daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med delly dialign dialign-t dicompyler dicomscope dindel disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem epcr estscan exonerate fast5 fastaq fastdnaml fastlink fastml fastqtl fasttree ffindex figtree freecontact freemedforms-project fsa g2 galileo garli gdpc gemma genometester genometools gentle getdata gfapy gff2aplot gff2ps ghmm glam2 gnumed-client gnumed-server golang-github-dataence-porter2 graphlan grinder gwama gwyddion harvest-tools hilive hmmer2 hunspell-en-med hyphy idba igor igraph imagej imagevis3d indelible invesalius ipig jaligner jam-lib jebl2 jellyfish1 jheatchart kalign king king-probe kma kmc kmer kmerresistance kraken lagan lamarc lambda-align2 last-align lefse libace-perl libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java liblemon libmems libmialm libminc libmuscle libncl liboptions-java libpal-java libpll libpsortb libqes libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsmithwaterman libsort-key-top-perl libtabixpp libtecla libtfbs-perl libthread-pool libvistaio libxdf libzeep libzerg libzerg-perl ltrsift lucy maffilter mafft mapdamage maq maqview mash maude mauve-aligner maxflow medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mia mialmpick miaviewit microbegps milib minc-tools minia miniasm minimap minimap2 mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mptp mrbayes mriconvert mrs murasaki muscle mustang mypy nanook ncbi-entrez-direct ncbi-seg ncbi-tools6 neobio njplot norsnet norsp nutsqlite odil opencfu openslide openslide-python opensurgsim orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-wsi pal2nal paml papyrus paraclu parsinsert parsnp patman pbsim pbsuite pcalendar pdb2pqr perlprimer perm phipack phybin phylip phyml physamp phyutility phyx piler pilercr pirs pixelmed-codec placnet plasmidomics plasmidseeker plink plink1.9 plip poa pondus populations poretools pp-popularity-contest prank predictnls predictprotein prime-phylo primer3 proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pscan-chip pscan-tfbs pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-biom-format python-biotools python-burrito python-bx python-bz2file python-clips python-cobra python-cogent python-colormap python-colormath python-csb python-cutadapt python-dendropy python-depinfo python-easydev python-freecontact python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-mypy-extensions python-pipdeptree python-pyfaidx python-pyflow python-pymummer python-pyvcf python-qcli python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-spectra python-sqlsoup python-treetime python-xopen q2cli qrisk2 qsopt-ex radiant rambo-k rampler rate4site ray rdp-alignment rdp-classifier rdp-readseq readseq reapr repeatmasker-recon reprof rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer seqan seqmagick seqprep seqtk seqtools sibsim4 sickle sigma-align sim4 smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sofa-framework spaced spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf ssake stacks staden staden-io-lib subread suitename sumaclust sumatra sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align toil toppred trace2dbest tracetuner transdecoder transrate-tools tree-puzzle treeviewx trimmomatic tvc uc-echo varna vcftools velvet velvetoptimiser volpack vtk-dicom wise xmedcon yaggo yaha zalign

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.