maint_debian-med package set for bullseye/armhf

• All tracked package sets for bullseye/armhf

The package set maint_debian-med in bullseye/armhf consists of 745 packages:
36 (4.8%) packages failed to build reproducibly: oscar fastp pydicom metastudent-data mummer dicom3tools ncbi-blast+ mira jebl2 python-deeptoolsintervals flexbar treeview gbrowse macs python-pysam mothur filtlong loki librcsb-core-wrapper librostlab python-cogent logol jmodeltest shapeit4 emboss bart python-pauvre+ mapsembler2 libzeep gdcm libsbml segemehl raster3d ragout mypy htslib##
30 (4.0%) packages failed to build from source: kleborate resfinder-db python-parasail pbbam# physamp libsis-base-java python-pbcore spades ismrmrd# plink2 bali-phy gatb-core python-pyani proteinortho cwltool spdlog lastz tree-puzzle seqan3 bedtools bustools libundead seqmagick nitime python-skbio libbiod microbiomeutil ball orthanc-dicomweb ivar
77 (10.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: swarm-cluster odil gmap soapdenovo soapaligner iqtree hmmer plast insighttoolkit4 fis-gtm consensuscore soapdenovo2 circlator bolt-lmm seqan2 libstatgen bio-eagle infernal snap-aligner bowtie2 ncbi-vdb sra-sdk artemis rna-star rapmap jellyfish hhsuite sortmerna picard-tools bowtie cnvkit vsearch pftools obitools kissplice lambda-align2 phast elastix sight srst2 barrnap centrifuge gubbins drop-seq qcat crac discosnp seqsero sspace rsem minimac4 qcumber quorum fsm-lite mirtop metaphlan2 salmon minia trinityrnaseq psortb pbdagcon gasic python-gffutils pbseqlib plastimatch unicycler blasr pychopper camitk ginkgocadx bcalm mindthegap vg skesa python-pybedtools khmer ariba
602 (80.8%) packages successfully build reproducibly: abacas abyss adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align ampliconnoise andi anfo aragorn arcp arden artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage bart-view bbmap bcftools### beads beagle beast2-mcmc beast-mcmc bedops berkeley-express biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig4c++ biosquid bio-tradis bitseq boxshade bppphyview bppsuite brig busco bwa camp canu cassiopee cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity conda-package-handling conservation-code ctdconverter ctdopts ctn ctsim cyvcf2 daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly dialign dialign-t diamond-aligner dicompyler dicomscope dindel disulfinder dnaclust dnapi dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer emmax epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastml fastqc fastqtl fasttree fermi-lite ffindex figtree fitgcp flash freebayes freecontact fsa g2 galileo garli gdpc genometester genomethreader genometools gentle gfapy gff2aplot gff2ps gffread glam2 gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gwama gwyddion harvest-tools hdmf hilive hinge hisat2 hmmer2 hopscotch-map htscodecs htseq htsjdk hunspell-en-med idba igdiscover igor igraph imagej indelible invesalius ipig iva jaligner jam-lib jellyfish1 jheatchart kalign kallisto kaptive kineticstools king king-probe kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align last-align lefse libace-perl libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl liboptions-java libpal-java libpll libqes libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libseqlib libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd ltrsift lucy maffilter mafft mapdamage maq maqview mash maude mauve-aligner mcl medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps milib minc-tools miniasm minimap minimap2 mipe mlv-smile mmseqs2 mptp mrbayes mriconvert mrs multiqc murasaki muscle mustang nanofilt nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neobio ngs-sdk nibabel njplot norsp nutsqlite openslide openslide-python opensurgsim optimir orthanc orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp patman patsy pbcopper pbsim pcalendar pdb2pqr perm phipack phybin phylip phylonium phyml phyutility phyx piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plink plink1.9 plip poa populations porechop poretools pp-popularity-contest praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profphd-utils proftmb progressivemauve prottest pscan-chip pscan-tfbs psychopy pvrg-jpeg pybel pybigwig pycoqc pymia pyqi pyrle pyscanfcs python3-typed-ast python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-dendropy python-depinfo python-dicompylercore python-dnaio python-easydev python-etelemetry python-fitbit python-freecontact python-geneimpacts python-hdmedians python-hl7 python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-mypy-extensions python-nanoget python-nanomath python-pbcommand python-pipdeptree python-py2bit python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-schema-salad python-scitrack python-screed python-spectra python-sqlsoup python-sqt python-tinyalign python-treetime python-wordcloud python-xopen pyxid pyxnat q2templates qsopt-ex qtltools quicktree racon radiant rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr recan repeatmasker-recon reprof resfinder rnahybrid roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer seirsplus seqan seqprep seqtk seqtools# sga sibsim4 sickle sigma-align sim4 simde skewer smalt smart-open snakemake# snap sniffles snpomatic snp-sites soapsnp socket++ spaced spaln sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf ssake stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco swissknife tantan t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tophat-recondition toppred tracetuner transdecoder transrate-tools transtermhp treeviewx trim-galore trimmomatic trinculo tvc uc-echo umis varna vcftools velvet velvetoptimiser virulencefinder vmatch volpack vtk-dicom wise wtdbg2 xmedcon yaggo yaha yanagiba zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.