maint_debian-med package set for bullseye/armhf

• All tracked package sets for bullseye/armhf

The package set maint_debian-med in bullseye/armhf consists of 772 packages:
31 (4.0%) packages failed to build reproducibly: python-pysam loki filtlong librostlab jmodeltest python-cogent logol shapeit4 emboss gdcm metastudent-data microbiomeutil mira libzeep segemehl libsbml bali-phy dicom3tools macs ncbi-blast+ htslib## pydicom python-deeptoolsintervals hhsuite mmseqs2 flexbar mummer mypy treeview gbrowse jebl2
29 (3.8%) packages failed to build from source: ismrmrd# scrappie plink2 megahit kleborate bbhash rnahybrid python-streamz ngmlr vt resfinder-db metabat umap-learn python-parasail intake libsis-base-java nanopolish gatb-core python-pbcore libbiod jellyfish nitime ivar ball python-skbio libgclib bedtools bustools spades
74 (9.6%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 libstatgen bio-eagle infernal sra-sdk ncbi-vdb elastix insighttoolkit4 rapmap sortmerna pftools cnvkit obitools kissplice lambda-align2 vsearch khmer salmon htsjdk snap-aligner swarm-cluster rna-star soapdenovo iqtree soapaligner hmmer plast vg pbcopper consensuscore soapdenovo2 circlator bowtie2 artemis gmap paleomix bowtie picard-tools minia barrnap sight gubbins seqsero centrifuge qcat roary sspace discosnp minimac4 psortb ginkgocadx camitk fsm-lite quorum python-ete3 mirtop rsem gasic crac srst2 python-gffutils bcalm python-pybedtools plastimatch mindthegap ariba skesa pbbam pychopper nifti2dicom pplacer unicycler proteinortho diamond-aligner
638 (82.6%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount altree amap-align ampliconnoise andi anfo aragorn arcp arden artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage bart bart-view bbmap bcftools### beads beagle beast2-mcmc beast-mcmc bedops berkeley-express biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig4c++ biosquid biosyntax bio-tradis bitseq boxshade bppsuite brig busco bwa camp canu cassiopee cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conservation-code covtobed ctdconverter ctdopts ctn ctsim cwlformat cwltool cyvcf2 daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly dextractor dialign dialign-t dicompyler dicomscope dindel disulfinder dnaclust dnapi dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastml fastp fastqtl fasttree fermi-lite ffindex figtree fitgcp flash freebayes freecontact fsa g2 galileo garli gdpc genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps glam2 gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gwama gwyddion harvest-tools hdmf hilive hinge hisat2 hmmer2 hopscotch-map htscodecs htseq hunspell-en-med hyphy idba idseq-bench igdiscover igor imagej indelible insilicoseq invesalius ipig iva jaligner jam-lib jellyfish1 jheatchart kalign kallisto kaptive kineticstools king king-probe kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align last-align lastz lefse libace-perl libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java liblemon libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl liboptions-java libpal-java libpll libpsortb libqes libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libseqlib libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter ltrsift lucy maffilter mafft mapdamage maq maqview mash maude mauve-aligner mcl medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps milib minc-tools miniasm minimap minimap2 mipe mlv-smile mothur mptp mriconvert mrs multiqc murasaki muscle mustang nanofilt nanook nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neobio ngs-sdk nibabel nifticlib njplot norsp nutsqlite odil openslide openslide-python opensurgsim optimir orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pcalendar pdb2pqr perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plink plink1.9 plip poa populations porechop poretools pp-popularity-contest praat prank predictnls presto primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profphd-utils proftmb progressivemauve prottest pscan-chip pscan-tfbs psychopy pvrg-jpeg pybel pybigwig pycoqc pycorrfit pymia pyode pyqi pyrle pyscanfcs pysurfer python3-typed-ast python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-etelemetry python-fitbit python-freecontact python-geneimpacts python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pauvre python-pbcommand python-pipdeptree python-py2bit python-pyani python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-spectra python-sqlsoup python-sqt python-tinyalign python-treetime python-wordcloud python-xopen pyxid pyxnat q2templates qrisk2 qsopt-ex qtltools# quicktree racon radiant ragout rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer seirsplus seqan seqmagick seqprep seqtk seqtools sga sibsim4 sickle sigma-align sim4 simde+ skewer smalt smart-open snakemake snap sniffles snpomatic soapsnp socket++ sorted-nearest spaced spaln spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf ssake stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco sweed swissknife tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis varna vcftools velvet velvetoptimiser virulencefinder vmatch volpack vtk-dicom wise wtdbg2 xmedcon yaggo yaha yanagiba zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.