maint_debian-med package set for bullseye/armhf

• All tracked package sets for bullseye/armhf

The package set maint_debian-med in bullseye/armhf consists of 651 packages:
36 (5.5%) packages failed to build reproducibly: mira sleepyhead libsbml mummer flexbar mothur lambda-align treeview librcsb-core-wrapper libgclib gdcm orthanc bart phast loki snakemake+ orthanc-dicomweb orthanc-webviewer ncbi-blast+ emboss jmodeltest libzeep ffindex htslib## raster3d segemehl mcl python-biopython shapeit4 metastudent-data microbiomeutil fastp dicom3tools librostlab mapsembler2 parsinsert#
22 (3.4%) packages failed to build from source: libsis-base-java gemma mia ismrmrd# python-easydev pbbam# seqan2 gffread python-xopen gatb-core bali-phy ngs-sdkP cwltool ncbi-entrez-direct logol bppphyview qtltools qiime python-pysam libundead prime-phylo ball
98 (15.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: rna-star plast fis-gtm infernal# circlator hisat2 soapdenovo2 relion swarm-cluster mmseqs2 kissplice bio-eagle soapaligner libstatgen snap-aligner# artemis picard-tools diamond-aligner insighttoolkit4 sortmerna cnvkit rapmap consensuscore bowtie bowtie2# jellyfish bwa pftools libssw nanopolish examl spoa sra-sdk praat fermi-lite khmer parafly bolt-lmm raxml vsearch mapdamage soapdenovo hhsuite obitools python-sqt mhap canu barrnap spades macsyfinder fsm-lite htsjdk proteinortho surankco gubbins fitgcp centrifuge iva ncbi-vdb srst2 python-pbcore qcumber libvcflib seqsero fastqc crac libseqlib racon giira chromhmm sspace sga minimac4 metaphlan2 rsem htseq psortb pbseqlib quorum pilon blasr freebayes tophat hinge python-pybedtools pbdagcon bcbio python-gffutils salmon trinityrnaseq bioperl-run paleomix gasic umis ariba beagle skesa atropos
495 (76.0%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden artfastqgenerator art-nextgen-simulation-tools assemblytics augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamtools bandage bart-view bbmap bcftools### beads beast2-mcmc beast-mcmc bedops bedtools berkeley-express biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosquid biosyntax bio-tradis bitseq boxshade bppsuite brig cain camp cassiopee cct cdbfasta cd-hit cgview changeo charls chromimpute ciftilib circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity conservation-code ctdconverter ctdopts ctn ctsim cycle cyvcf2 daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly dialign dialign-t dicompyler dicomscope dindel disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax epcr epigrass estscan exonerate fast5 fastaq fastdnaml fastlink fastml fastqtl fasttree figtree freecontact fsa g2 galileo garli gdpc genometester genometools gentle getdata gfapy gff2aplot gff2ps ghmm glam2 gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gwama gwyddion harvest-tools hilive hmmer2 hunspell-en-med hyphy idba igor igraph imagej indelible invesalius ipig jaligner jam-lib jebl2 jellyfish1 jheatchart kalign kallisto king king-probe kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align2 last-align lefse libace-perl libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libmems libmialm libminc libmurmurhash libmuscle libncl liboptions-java libpal-java libpll libpsortb libqes libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsmithwaterman libsort-key-top-perl libtabixpp libtecla libtfbs-perl libthread-pool libvistaio libxdf libzerg libzerg-perl libzstd ltrsift lucy macs maffilter mafft maq maqview mash maude mauve-aligner maxflow medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mialmpick miaviewit microbegps milib minc-tools minia miniasm minimap minimap2 mipe mlv-smile mptp mrbayes mriconvert mrs murasaki muscle mustang mypy nanook ncbi-seg ncbi-tools6 neobio njplot norsp nutsqlite odil openslide openslide-python optimir orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-wsi pal2nal paml papyrus paraclu parsnp patman pbcopper pbsim pcalendar perlprimer perm phipack phybin phylip phyml physamp phyutility phyx piler pilercr pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plink plink1.9 plip poa populations porechop poretools pp-popularity-contest prank predictnls primer3 proalign probabel probalign probcons proda prodigal profphd-utils proftmb progressivemauve prottest pscan-chip pscan-tfbs pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-biom-format python-biotools python-bx python-bz2file python-cgecore python-cobra python-cogent python-colormap python-colormath python-csb python-cutadapt python-dendropy python-depinfo python-dnaio python-fitbit python-freecontact python-geneimpacts python-hdmedians python-hl7 python-lzstring python-matplotlib-venn python-multipletau python-mypy-extensions python-pipdeptree python-py2bit python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyvcf python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-spectra python-sqlsoup python-treetime q2cli qrisk2 qsopt-ex radiant rambo-k rampler rate4site ray rdp-alignment rdp-classifier rdp-readseq readseq reapr repeatmasker-recon reprof rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer seqan seqmagick seqprep seqtk seqtools sibsim4 sickle sigma-align sim4 smalt snap sniffles snpomatic snp-sites soapsnp socket++ spaced spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf ssake stacks staden staden-io-lib subread suitename sumaclust sumatra sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align+ toil toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic tvc uc-echo varna vcftools velvet velvetoptimiser virulencefinder volpack vtk-dicom wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.