Debian navigation

maint_debian-med package set for unstable/arm64

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in unstable/arm64
The package set maint_debian-med in unstable/arm64 consists of 899 packages:
None 87 (9.7%) packages failed to build reproducibly: delly mira bppsuite libchado-perl last-align seqan2 pydicom sambamba libvcflib sumatra ismrmrd# bustools htslib libbiod parallel bali-phy phast mrtrix3 fasta3 simka exonerate treeview assembly-stats gifticlib pdb2pqr cassiopee libsbml sumaclust nifticlib cif-tools indexed-gzip nipy unifrac ball jellyfish vtk-dicom g2 libcereal bppphyview macs ncbi-entrez-direct mosdepth dextractor mypy python-coolerP libqes kissplice mcl ncbi-blast+ python-anndata salmon dcmtk autodock-vina libpll centrifuge maffilter freecontact odin raster3d librostlab-blast shasta civetweb gbrowse seqan3 libminc hhsuite liblemon python-pysam spoa survivor primer3 seqtk emboss hts-nim-tools lumpy-sv metastudent-data libace-perl axe-demultiplexer odil murasaki cyvcf2 dicom3tools logol swarm-cluster prime-phylo libgclib gatb-core
None 27 (3.0%) packages failed to build from source: acedb spades vg canu python-streamz pynwb libcifpp minimap2 snakemake libpdb-redo lamarc pbcopper dssp orthanc-wsi python-easydev pychopper opensurgsim nipype eegdev python-sqlsoup bamtools proteinortho mia tiddit rapmap tvc nitime
None None None None 51 (5.7%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: plink1.9 circlator pftools artemis sortmerna bio-eagle prokka megahit libstatgen xenium macsyfinder sra-sdk hmmer metabat infernal mecat2 elastix bolt-lmm lambda-align2 soapdenovo2 ncbi-vdb soapaligner fis-gtm iqtree consensuscore bmtk sight sofa-framework nifti2dicom ginkgocadx smrtanalysis plastimatch camitk unicycler biosig falcon barrnap simpleitk psortb minimac4 skesa seqsero shovill libmmmulti gubbins sepp parallel-fastq-dump q2-dada2 soapdenovo plasmidid obitools
None 734 (81.6%) packages successfully build reproducibly: abacas abyss adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arcp arden argh ariba artfastqgenerator art-nextgen-simulation-tools assemblytics ataqv atropos augur augustus autodocksuite baitfisher bambamc bamclipper bamkit bandage bart bart-view bbhash bbmap bcalm bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biobambam2 biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bio-vcf bitseq blasr bowtie bowtie2 boxshade brig busco bwa camp capsule-maven-nextflow cat-bat cct cdbfasta cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conservation-code covtobed crac ctdconverter ctn cwlformat cwltool daligner damapper dascrubber dawg dazzdb dcm2niix debian-med deepnano density-fitness dialign dialign-t diamond-aligner dicomnifti dicompyler dicomscope dipy discosnp disulfinder dnaclust dnapi drmaa drop-seq dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr estscan examl fast5 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fasttree fermi-lite ffindex figtree filtlong flexbar freebayes fsa fsm-lite galileo garli gasic gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gjh-asl-json glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gsort gwama gwyddion h5sparse harvest-tools hdmf hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htsjdk hunspell-en-med icb-utils idba idseq-bench igdiscover igor igraph iitii illustrate imagej indelible insilicoseq intake invesalius ipig iva ivar jaligner jam-lib jebl2 jellyfish1 jheatchart jmodeltest kalign kallisto kaptive khmer kineticstools king king-probe kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lambda-align lastz lefse libamplsolver libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libedlib libfastahack libflathashmap libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libmaus2 libmems libmialm libmmap-allocator libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpj-java libpsortb libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-utils-perl libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvistaio libxdf libzeep libzerg libzerg-perl libzstd lighter ltrsift lucy mafft mapdamage maq maqview mash maude mauve-aligner medicalterms mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimap mirtop mlv-smile mmseqs2 mothur mptp mrbayes mrc mriconvert mricron multiqc mummer muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-seg ncbi-tools6 neo neobio ngmlr ngs-sdk nibabel nim-kexpr nim-lapper njplot norsnet norsp ntcard nthash nutsqlite nxtrim ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbbam pbdagcon pbseqlib pbsim pbsuite pcalendar peptidebuilder perlprimer perm phybin phylip phylonium phyml physamp phyutility phyx picard-tools pigx-rnaseq# piler pilercr pilon pinfish pique pirs pixelmed pizzly placnet plasmidomics plasmidseeker plast plink plink2 plip poa populations porechop poretools pplacer pp-popularity-contest prank predictnls presto prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve prottest pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pymia pynn pyode pyqi pyranges pyrle pyscanfcs pysurfer python-alignlib python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-cigar python-cobra python-cogent python-colormap python-colormath python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-epimodels python-ete3 python-etelemetry python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-loompy python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pairix+ python-parasail python-pauvre python-pbcommand python-pbcore python-py2bit python-pyani python-pybedtools+ python-pycosat python-pyfaidx python-pyflow python-pymummer python-pynndescent python-pypubsub python-pyvcf python-questplus python-ruffus python-screed python-skbio python-spectra python-sqt python-stdlib-list python-stubserver python-tinyalign python-treetime python-upsetplot python-wdlparse python-wordcloud pyxid pyxnat q2-alignment q2cli q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-control q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder resfinder-db rnahybrid roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus seqkit seqmagick seqprep seqtools seriation sga shapeit4 sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc skewer smalt smart-open snap snap-aligner sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread suitename sumalibs surankco sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trinculo uc-echo umap-learn umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt wham-align wise wtdbg2 xdffileio xmedcon yaggo yaha yanagiba yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.