maint_debian-med package set for unstable/arm64

• All tracked package sets for unstable/arm64

The package set maint_debian-med in unstable/arm64 consists of 921 packages:
23 (2.5%) packages failed to build reproducibly: emboss dicom3tools parallel ncbi-blast+ q2cliP mia mrtrix3 macsyfinder librostlab mmlib treeview gdcm python-cogent mapsembler2 metastudent-data gbrowse ball salmon libpll hmmer heudiconv ncbi-igblast twopaco
21 (2.3%) packages failed to build from source: unifrac-tools pychopper python-cooler python-array-api-compat python-pbcore libmaus2 python-awkward nipype mlv-smile intake vg acedb picard-tools umap-learn nibabel praat sepp pigx-rnaseq nitime ncbi-seg genomicsdb
43 (4.7%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: pftools bolt-lmm insighttoolkit5 spades theseus fis-gtm obitools khmer soapaligner q2-phylogeny bmtk soapdenovo lambda-align2 megahit libstatgen mecat2 soapdenovo2 sortmerna iqtree subarch-select wtdbg2 probabel bio-eagle elastix xenium plink1.9 libatomic-queue circlator unicycler psortb pplacer shovill plastimatch q2-dada2 minimac4 sight camitk deblur libmmmulti gubbins q2-quality-control q2-feature-classifier metabat
834 (90.6%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops berkeley-express bifrost bioawk biobambam2 biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-vcf bitseq blasr bppphyview bppsuite brian brig btllib busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming consensuscore conservation-code covtobed ctdconverter ctdopts ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix debian-med density-fitness dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emperor epcr epigrass estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor igv iitii illustrate imagej imbalanced-learn indelible infernal insilicoseq invesalius ipig ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king king-probe kissplice kleborate klustakwik kma kmc kraken kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg liblemon libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsbml libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft mapdamage maq maqview mash maude mauve-aligner mcaller mcl medicalterms megadepth melting mencal metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimap mipe mira mirtop mmseqs2 mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-tools6 ncbi-vdb neo neobio ngmlr nifticlib nim-hts nim-kexpr nim-lapper nipy njplot norsnet norsp ntcard nthash nutsqlite nxtrim odil odin opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec placnet plasmidid plasmidomics plasmidseeker plast plink plink2 plip poa populations porechop poretools prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pymia pynn pyode pyqi pyranges pyscanfcs pysurfer python-alignlib python-anndata python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-loompy python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pysam python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid q2-alignment q2-cutadapt q2-demux q2-diversity-lib q2-emperor q2-feature-table q2-fragment-insertion q2-metadata q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder-db rnahybrid rna-star roary roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm seaview seer segemehl seqan2 seqan3 seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shapeit4 shasta sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka simrisc skesa skewer smalt smrtanalysis snakemake snap snap-aligner sniffles snippy snpeff snpsift snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog spoa sprai spread-phy squizz sra-sdk srf ssake sspace ssshtest staden staden-io-lib stringtie subread sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tipp tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trinculo trinityrnaseq tvc uc-echo ugene umis uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vsearch vt vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.