maint_debian-med package set for trixie/armhf

• All tracked package sets for trixie/armhf

The package set maint_debian-med in trixie/armhf consists of 896 packages:
23 (2.6%) packages failed to build reproducibly: segemehl biojava-live dicom3tools gbrowse treeview twopaco liblemon libpll python-pysam ncbi-blast+ jebl2 hmmer libamplsolver parallel shapeit4 igraph metastudent-data dipy filtlong gdcm cwltool python-trx-python librostlab
17 (1.9%) packages failed to build from source: gjh-asl-json libmaus2 biojava6-live libbioparser-dev python-pbcore bbhash q2cliP unifrac-tools abpoa bifrost python-biom-format flye hmmer2 libtecla maude parsinsert ncbi-igblast
300 (33.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 mecat2 sra-sdk elastix iqtree fis-gtm bio-eagle metabat probabel ncbi-vdb sspace pbdagcon surankco pilon pbbam resfinder-db nthash kmerresistance drop-seq libgoby-java king picard-tools unicycler cat-bat proteinortho biobambam2 plasmidid shovill python-ete3 rockhopper skesa parallel-fastq-dump beagle igv kraken snpeff snpsift libwfa2 q2-cutadapt q2-emperor q2-quality-filter emperor chromhmm pbseqlib q2-types metaeuk q2-fragment-insertion q2-taxa q2-feature-table q2-metadata q2-alignment minimac4 camitk libmmmulti pizzly libatomic-queue seqsero qcumber gasic srst2 metaphlan busco kleborate gubbins ariba soapaligner lambda-align2 jellyfish1 theseus transdecoder kma libvcflib insighttoolkit5 subarch-select ntcard fastqc paleomix htsjdk unifrac minia abyss gdpc shasta discosnp mash sambamba bowtie2 snap-aligner mindthegap gatb-core salmon mrtrix3 barrnap simka bcalm kissplice plastimatch q2-diversity-lib vsearch bolt-lmm swarm-cluster bowtie pbcopper spades diamond-aligner rna-star spaln q2-phylogeny libvbz-hdf-plugin mmlib libgdf cyvcf2 amide genomethreader patsy libjloda-java khmer python-skbio centrifuge obitools emboss embassy-domsearch embassy-domainatrix embassy-domalign emboss-explorer kmc pigx-rnaseq pydicom quorum pyensembl bmtk insilicoseq macsyfinder libhttp-nio-java toml11 psychopy ivar libla4j-java opencfu bedops openslide libstatgen librdp-taxonomy-tree-java pycorrfit pyranges python-cooler macs trinityrnaseq kallisto ncbi-acc-download conda-package-streaming libzeep sortmerna libqes mapdamage seqan-raptor libleidenalg bustools wise sumalibs infernal hts-nim-tools nim-hts orthanc-dicomweb gentle xxsds-dynamic python-pyfaidx libpj-java dssp ont-fast5-api python-scitrack maqview sigviewer nanook veryfasttree seqan3 rapmap paryfor cwltest ngmlr libkmlframework-java liboptions-java alter-sequence-alignment delly figtree pixelmed-codec galileo orthanc-postgresql btllib aegean ltrsift gwyddion genometools lamassemble augur rsem dawg soapdenovo2 gfapy nanopolish hisat2 argh rambo-k seqan-needle exonerate conservation-code pybel spread-phy plast python-fitbit rdp-readseq fastq-pair python-gtfparse tortoize surpyvor python-prefixed dnapi plasmidomics proalign rdp-alignment relion racon qtltools uc-echo prottest python-mne bioperl-run cycle orthanc-wsi libbio-graphics-perl wtdbg2 python-parasail dnarrange xenium ugene castxml ctffind iitii mapsembler2 python-pyflow python-bioframe autodocksuite biojava4-live lambda-align libhac-java libhmsbeagle libchado-perl runcircos-gui jam-lib biomaj3-download python-dendropy python-pangolearn drmaa ciftilib nifticlib xmedcon orthanc orthanc-neuro cwlformat dcmtk odil toil mmseqs2 tvc seaview soapdenovo harvest-tools ismrmrd# garli biomaj3-process umis tree-puzzle flexbar fsm-lite libtabixpp ipig phyutility kmer ncbi-entrez-direct python-biotools pftools charls python-pybedtools bppphyview ncbi-tools6 ctn psortb seqtools crac treeviewx jellyfish libbpp-qt edfbrowser reapr minc-tools lamarc vt phyml librcsb-core-wrapper populations
556 (62.1%) packages successfully build reproducibly: abacas adapterremoval adun.app aeonbits-owner aevol aghermann alien-hunter allelecount altree amap-align andi any2fasta aragorn arden argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedtools berkeley-express bioawk biomaj3 biomaj3-cli biomaj3-core biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee cct cdbfasta cd-hit cgview changeo chip-seq chromimpute cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling covtobed ctdconverter cutesv daligner damapper dascrubber dazzdb dcm2niix debian-med dextractor dialign dialign-t dicomscope disulfinder dnaclust dwgsim ecopcr edflib edtsurf eegdev eigensoft elph e-mem emmax epcr estscan examl fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqtl fasttree fermi-lite ffindex fitgcp flash freecontact fsa g2 gatk-bwamem gatk-fermilite gemma genometester getdata gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama harmonypy hdmf hhsuite hinge hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba igor illustrate imagej imbalanced-learn indelible iva jaligner jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kraken2 lagan last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-raa libbpp-seq libbpp-seq-omics libcereal libcifpp libcolt-free-java libctapimkt libdeflate libdistlib-java libdivsufsort libedlib libfastahack libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhat-trie libhpptools libics libips4o libjung-free-java libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl libpal-java libpsortb librandom123 librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtfbs-perl libthread-pool libxdf libzerg libzerg-perl lighter loki lucy lumpy-sv maffilter mafft malt maq mauve-aligner mcaller mcl medicalterms megadepth megan-ce melting metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib miniasm minimap minimap2 mipe mira mirtop mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanosv neobio nibabel nim-kexpr nim-lapper nipy njplot norsnet nutsqlite nxtrim odin openslide-python optimir orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-webviewer oscar pairtools pal2nal papyrus paraclu parafly parasail parsnp patman pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium physamp phyx picopore piler pilercr pinfish pique pirs pixelmed placnet plasmidseeker plink plink1.9 plink2 plip poa porechop poretools praat prank presto primer3 prinseq-lite probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybigwig pycoqc pyfastx pynwb pyode pyqi pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-cgecore python-cgelib python-cigar python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dicompylercore python-dnaio python-etelemetry python-freecontact python-geneimpacts python-gffutils python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pauvre python-pbcommand python-py2bit python-pyani python-pycosat python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex quicktree quitcount radiant ragout rampler raster3d rate4site raxml ray rdp-classifier readerwriterqueue readseq recan relacy repeatmasker-recon resfinder rnahybrid roary roguenarok rtax ruby-rgfa saint salmid samblaster samclip samtools samtools-legacy scoary scrappie scrm seer seirsplus seqkit seqmagick seqprep seqtk seriation setcover sga sibelia sibsim4 sickle sigma-align sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumatra survivor sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit tombo tophat-recondition toppred trace2dbest tracetuner transrate-tools transtermhp trf trim-galore trimmomatic trinculo uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack wham-align xpore yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.