maint_debian-med package set for trixie/armhf
Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:
- maint_debian-accessibility
- maint_debian-boot
- maint_debian-lua
- maint_debian-med
- maint_debian-ocaml
- maint_debian-on-mobile-maintainers
- maint_debian-python
- maint_debian-qa
- maint_debian-science
- maint_debian-x
- maint_pkg-android-tools-devel
- maint_pkg-erlang-devel
- maint_pkg-fonts-devel
- maint_pkg-games-devel
- maint_pkg-golang-maintainers
- maint_pkg-grass-devel
- maint_pkg-haskell-maintainers
- maint_pkg-java-maintainers
- maint_pkg-javascript-devel
- maint_pkg-multimedia-maintainers
- maint_pkg-perl-maintainers
- maint_pkg-php-pear
- maint_pkg-openstack
- maint_pkg-r
- maint_pkg-ruby-extras-maintainers
- maint_pkg-rust-maintainers
- maint_reproducible-builds
The package set maint_debian-med in
trixie/armhf consists of 887 packages:
27 (3.0%) packages
failed to build reproducibly:
segemehl
dicom3tools
twopaco
gbrowse
gdcm
liblemon
treeview
dcmtk
libpll
odil
ncbi-blast+
python-pysam
hmmer
libamplsolver
shapeit4
parallel
librostlab
metastudent-data
dipy
porechop
pycorrfit
pyscanfcs
nitime
libsbml
filtlong
libcifpp
igraph
21 (2.4%) packages
failed to build from source:
bbhash
libbioparser-dev
ismrmrd#
maude
python-parasail
gjh-asl-json
unifrac-tools
bifrost
parsinsert
seqan-raptor
prime-phylo
python-mne
flye
libmaus2
abpoa
python-pbcore
pyranges
ugene
kmc
ncbi-igblast
btllib
131 (14.8%) packages
are either in depwait state, blacklisted, not for us, or cannot be downloaded:
seqan2
megahit
mecat2
wtdbg2
elastix
iqtree
bio-eagle
metabat
probabel
ncbi-vdb
shasta
soapaligner
lambda-align2
jellyfish1
theseus
insighttoolkit5
subarch-select
sortmerna
minia
gdpc
discosnp
mash
snap-aligner
gatb-core
salmon
mrtrix3
bolt-lmm
simka
bcalm
diamond-aligner
bowtie
pbcopper
spades
spaln
rapmap
libgoby-java
shovill
beagle
chromhmm
rockhopper
embassy-domsearch
emboss
embassy-domalign
embassy-domainatrix
parallel-fastq-dump
libwfa2
metaeuk
consensuscore
artemis
libmmmulti
kleborate
busco
srst2
metaphlan
gasic
seqsero
gubbins
camitk
swarm-cluster
emperor
htsjdk
transdecoder
fis-gtm
barrnap
infernal
fsm-lite
rsem
xenium
crac
mapsembler2
mmseqs2
soapdenovo
sspace
plastimatch
pftools
libgenome-model-tools-music-perl
ntcard
quorum
kmerresistance
jellyfish
bowtie2
resfinder-db
kallisto
kissplice
pizzly
trinityrnaseq
cat-bat
surankco
pilon
soapdenovo2
libvcflib
sra-sdk
kma
libatomic-queue
pysurfer
sight
minimac4
libstatgen
itkgenericlabelinterpolator
python-iow
biobambam2
python-cooler
ants
macsyfinder
unifrac
fastqc
abyss
deblur
pbdagcon
python-ete3
python-skbio
drop-seq
snpeff
paleomix
snpsift
libhttp-nio-java
itkadaptivedenoising
igv
bmtk
rna-star
centrifuge
vsearch
pbseqlib
ariba
qcumber
pigx-rnaseq
seqan-needle
picard-tools
proteinortho
nthash
pbbam
708 (79.8%) packages
successfully build reproducibly:
abacas
adapterremoval
adun.app
aegean
aeonbits-owner
aevol
aghermann
alien-hunter
allelecount
alter-sequence-alignment
altree
amap-align
amide
andi
any2fasta
aragorn
arden
argh
argtable2
artfastqgenerator
art-nextgen-simulation-tools
assembly-stats
assemblytics
ataqv
atropos
augur
augustus
autodocksuite
autodock-vina
axe-demultiplexer
baitfisher
bali-phy
bambamc
bamclipper
bamkit
bamtools
bandage
bart
bart-view
bcftools
beast2-mcmc
beast-mcmc
bedops
bedtools
berkeley-express
bioawk
biojava4-live
biojava6-live
biojava-live
biomaj3
biomaj3-cli
biomaj3-core
biomaj3-daemon
biomaj3-download
biomaj3-process
biomaj3-user
biomaj3-zipkin
bioperl
bio-rainbow
biosig
biosquid
biosyntax
bio-tradis
bio-vcf
bitseq
boxshade
bppphyview
bppsuite
brian
brig
bwa
camp
capsule-maven-nextflow
capsule-nextflow
cassiopee
castxml
cct
cdbfasta
cd-hit
cgview
changeo
charls
chip-seq
chromimpute
ciftilib
cif-tools
circos
circos-tools
civetweb
clearcut
clonalframe
clonalframeml
clonalorigin
clustalo
clustalw
clustalx
cnvkit
codonw
coils
concavity
concurrentqueue
conda-package-handling
conda-package-streaming
conservation-code
covtobed
ctdconverter
ctdopts
ctffind
ctn
ctsim
cutesv
cwlformat
cwltest
cwltool
cycle
cyvcf2
daligner
damapper
dascrubber
dawg
dazzdb
dcm2niix
dcmstack
debian-med
delly
density-fitness
dextractor
dialign
dialign-t
dicomscope
disulfinder
dnaclust
dnapi
dnarrange
dssp
dwgsim
ea-utils
ecopcr
edfbrowser
edflib
edtsurf
eegdev
eigensoft
elph
emboss-explorer
e-mem
emmax
epcr
estscan
examl
exonerate
fast5
fasta3
fastani
fastaq
fastdnaml
fastlink
fastml
fastp
fastq-pair
fastqtl
fasttree
fermi-lite
ffindex
figtree
fitgcp
flash
flexbar
freecontact
fsa
g2
galileo
gatk-bwamem
gatk-fermilite
gemma
genometester
genomethreader
genometools
gentle
getdata
gfapy
gff2aplot
gff2ps
gffread
ggd-utils
ghmm
gifticlib
glam2
gmap
gnumed-client
gnumed-server
grabix
graphlan
grinder
gsort
gwama
gwyddion
harmonypy
harvest-tools
hdmf
hhsuite
hinge
hisat2
hmmer2
hnswlib
hopscotch-map
htscodecs
htseq
htslib
hunspell-en-med
hyphy
icb-utils
idba
igor
illustrate
imagej
imbalanced-learn
indelible
insilicoseq
invesalius
ipig
iva
jaligner
jam-lib
jebl2
jheatchart
jmodeltest
kalign
kaptive
kineticstools
king-probe
klustakwik
kmer
kraken2
lagan
lamarc
lamassemble
lambda-align
last-align
lastz
lefse
libace-perl
libargparse
libargs
libatomicbitvector
libbigwig
libbio-alignio-stockholm-perl
libbio-cluster-perl
libbio-coordinate-perl
libbio-das-lite-perl
libbio-db-biofetch-perl
libbio-db-embl-perl
libbio-db-hts-perl
libbio-db-ncbihelper-perl
libbio-db-seqfeature-perl
libbio-featureio-perl
libbio-graphics-perl
libbio-mage-perl
libbio-mage-utils-perl
libbiosoup-dev
libbio-tools-run-remoteblast-perl
libbio-variation-perl
libbitarray
libbpp-core
libbpp-phyl
libbpp-phyl-omics
libbpp-popgen
libbpp-qt
libbpp-raa
libbpp-seq
libbpp-seq-omics
libcereal
libchado-perl
libcolt-free-java
libctapimkt
libdisorder
libdistlib-java
libdivsufsort
libedlib
libfastahack
libflathashmap
libfreecontact-perl
libgclib
libgdf
libgenome
libgenome-perl
libgff
libgkarrays
libgo-perl
libgtextutils
libgzstream
libhac-java
libhat-trie
libhmsbeagle
libhpptools
libics
libips4o
libjloda-java
libjung-free-java
libkmlframework-java
libla4j-java
libleidenalg
libmcfp
libmems
libmialm
libminc
libmjson-java
libmurmurhash
libmuscle
libncl
libnewuoa
libomp-jonathonl
liboptions-java
libpal-java
libpdb-redo
libpj-java
libpsortb
libqes
librandom123
librcsb-core-wrapper
librdp-taxonomy-tree-java
librg-blast-parser-perl
librg-exception-perl
librg-utils-perl
librostlab-blast
libsecrecy
libseqlib
libshrinkwrap
libsis-base-java
libslow5lib
libsmithwaterman
libsort-key-top-perl
libssw
libstreamvbyte
libtabixpp
libtecla
libtfbs-perl
libthread-pool
libvbz-hdf-plugin
libvistaio
libxdf
libzeep
libzerg
libzerg-perl
lighter
loki
ltrsift
lucy
lumpy-sv
macs
maffilter
mafft
malt
mapdamage
maq
maqview
mauve-aligner
mcaller
mcl
mcl14
medicalterms
megadepth
megan-ce
melting
mencal
metaphlan2-data
metastudent
metastudent-data-2
mhap
microbegps
microbiomeutil
milib
minc-tools
miniasm
minimap
minimap2
mipe
mira
mirtop
mmlib
mothur
mptp
mrbayes
mrc
mricron
multiqc
mummer
murasaki
muscle
muscle3
mustang
nanofilt
nanolyse
nanook
nanopolish
nanosv
ncbi-acc-download
ncbi-entrez-direct
ncbi-seg
ncbi-tools6
neo
neobio
ngmlr
nibabel
nifticlib
njplot
norsnet
norsp
nutsqlite
nxtrim
odin
ont-fast5-api
opencfu
openslide
openslide-python
optimir
orthanc
orthanc-dicomweb
orthanc-gdcm
orthanc-imagej
orthanc-mysql
orthanc-neuro
orthanc-postgresql
orthanc-python
orthanc-webviewer
orthanc-wsi
oscar
pairtools
pal2nal
paml
papyrus
paraclu
parafly
parasail
parsnp
paryfor
patman
patsy
pbsim
pcalendar
pdb2pqr
peptidebuilder
perlprimer
perm
phast
phipack
phybin
phylip
phylonium
phyml
physamp
phyutility
phyx
picopore
piler
pilercr
pinfish
pique
pirs
pixelmed-codec
placnet
plasmidomics
plasmidseeker
plast
plink
plink1.9
plink2
plip
poa
populations
poretools
prank
predictnls
presto
primer3
prinseq-lite
proalign
probalign
probcons
proda
prodigal
profbval
profisis
profnet
profphd-utils
proftmb
progressivemauve
prokka
propka
prottest
pscan-chip
pscan-tfbs
psignifit
pullseq
pvrg-jpeg
pybel
pybigwig
pycoqc
pyensembl
pyfastx
pynwb
pyode
pyqi
python-alignlib
python-bcbio-gff
python-bel-resources
python-bids-validator
python-bioblend
python-bioframe
python-biom-format
python-biopython
python-biotools
python-bx
python-cgecore
python-cgelib
python-cigar
python-cobra
python-csb
python-cutadapt
python-cykhash
python-datacache
python-deeptools
python-deeptoolsintervals
python-dendropy
python-dicompylercore
python-dnaio
python-epimodels
python-etelemetry
python-fitbit
python-freecontact
python-geneimpacts
python-gffutils
python-gtfparse
python-hl7
python-hmmlearn
python-intervaltree-bio
python-leidenalg
python-nanoget
python-nanomath
python-pairix
python-pangolearn
python-pauvre
python-pbcommand
python-prefixed
python-py2bit
python-pyani
python-pybedtools
python-pycosat
python-pyfaidx
python-pymummer
python-pyspoa
python-pyvcf
python-questplus
python-ruffus
python-scitrack
python-screed
python-sqt
python-tinyalign
python-treetime
python-trx-python
python-wdlparse
pyxid
pyxnat
q2templates
qcat
qrisk2
qsopt-ex
qtltools
quicktree
quitcount
racon
radiant
ragout
rambo-k
rampler
raster3d
rate4site
raxml
ray
rdp-alignment
rdp-classifier
rdp-readseq
readerwriterqueue
readseq
reapr
recan
relacy
relion
repeatmasker-recon
reprof
resfinder
rnahybrid
roary
roguenarok
rtax
ruby-rgfa
runcircos-gui
saint
salmid
samblaster
samclip
samtools
samtools-legacy
savvy
sbmltoolbox
scoary
scrappie
scrm
scythe
seaview
seer
seirsplus
seqkit
seqmagick
seqprep
seqtk
seqtools
seriation
setcover
sga
sibelia
sibsim4
sickle
sigma-align
sigviewer
sim4
simde
simrisc
ska
skewer
smalt
snakemake
snap
sniffles
snpomatic
snp-sites
soapsnp
socket++
sorted-nearest
spaced
spdlog
spoa
sprai
spread-phy
srf
ssake
ssshtest
stacks
staden
staden-io-lib
stringtie
subread
suitename
surpyvor
survivor
svim
sweed
swissknife
tantan
tao-config
tao-json
t-coffee
terraphast
thesias
tiddit
tigr-glimmer
tm-align
tnseq-transit
tombo
toml11
tophat-recondition
toppred
tortoize
trace2dbest
tracetuner
transrate-tools
transtermhp
tree-puzzle#
treeviewx
trf
trim-galore
trimmomatic
trinculo
tvc
uc-echo
umis
uncalled
unikmer
varna
vcfanno
vcftools
velvet
velvetoptimiser
veryfasttree
virulencefinder
vmatch
volpack
vt
wham-align
wise
xdffileio
xmedcon
xpore
xxsds-dynamic
yaggo
yaha
yanagiba
yanosim
A package name displayed with a bold
font is an indication that this package has a note. Visited
packages are linked in green, those which have not been visited are
linked in blue.
A #
sign after the name of a package
indicates that a bug is filed against it. Likewise, a
+
sign indicates there is a
patch available, a P
means a
pending bug while #
indicates a
closed bug. In cases of several bugs, the symbol is repeated.