maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 783 packages:
98 (12.5%) packages failed to build reproducibly: crac cyvcf2 mypy centrifuge libminc libsbml plip primer3 simka pydicom camitk ctsim ncbi-entrez-direct spoa htslib## delly oscar seqan3 libpll ball prime-phylo macs# bustools emboss exonerate gbrowse gatb-core nitime fasta3 gmap freecontact swarm-cluster libqes treeview python-skbio g2 raster3d murasaki sumaclust maffilter sumatra libace-perl consensuscore libundead libbiod jellyfish mira mummer odil loki logol seqtk salmon metastudent-data vtk-dicom phast mapsembler2 sight soapdenovo ncbi-blast+ pdb2pqr vg hmmer estscan jmodeltest minia python-cogent libcereal ivar mcl velvet autodock-vina kissplice dicom3tools gdcm bamtools bppphyview cassiopee dcmtk elastix flexbar fis-gtm ginkgocadx librostlab librostlab-blast clustalo hyphy ismrmrd# libzeep axe-demultiplexer bppsuite sra-sdk microbiomeutil iqtree bowtie2# libgclib opensurgsim ncbi-vdb
28 (3.6%) packages failed to build from source: spdlog paleomix q2cli conda-package-handling mrbayes simpleitk pbbam# bali-phy unanimity libgtextutils q2-feature-classifier relion opencfu gemma q2-cutadapt pbdagcon artemis pynn# liblemon pbcopper seqan2 nipy macsyfinder qiime bart simde seqan sambamba
11 (1.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: insighttoolkit4 blasr pbseqlib sofa-framework pbgenomicconsensus falcon freebayes proteinortho pynast ampliconnoise clustalw
646 (82.5%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align andi anfo aragorn arcp arden ariba artfastqgenerator art-nextgen-simulation-tools assemblytics ataqv# atropos augur augustus autodocksuite baitfisher bambamc bandage barrnap bart-view bbmap bcalm bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig4c++ biosquid biosyntax bio-tradis bitseq bolt-lmm bowtie boxshade brig busco bwa camp canu cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalx cnvkit codonw coils conservation-code ctdconverter ctdopts ctn cwltool daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dnapi drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax epcr epigrass examl fast5 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash fsa fsm-lite galileo garli gasic gdpc genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ghmm glam2 gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gubbins gwama gwyddion harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hopscotch-map htscodecs htseq htsjdk hunspell-en-med idba igdiscover igor igraph imagej indelible infernal invesalius ipig iva jaligner jam-lib jebl2 jellyfish1 jheatchart kalign kallisto kaptive khmer kineticstools king king-probe kleborate kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align lambda-align2 last-align lefse libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java libmaus2 libmems libmialm libmurmurhash libmuscle libncl liboptions-java libpal-java libpsortb libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libstatgen libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd ltrsift lucy mafft mapdamage maq maqview mash maude mauve-aligner medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps milib minc-tools miniasm minimac4 minimap minimap2 mipe mirtop mlv-smile mmseqs2 mothur mptp mriconvert mrs multiqc muscle mustang nanook nanopolish ncbi-seg ncbi-tools6 neobio ngs-sdk nibabel njplot norsnet norsp nutsqlite obitools openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi pal2nal paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp patman patsy pbsim pbsuite pcalendar perlprimer perm pftools phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 poa populations porechop poretools pp-popularity-contest praat prank predictnls predictprotein prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve prokka prottest pscan-chip pscan-tfbs psortb psychopy pvrg-jpeg pybel pybigwig pycoqc pycorrfit pymia pyode pyqi pyscanfcs python3-typed-ast python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-easydev python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-loompy python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-mypy-extensions python-parasail python-pbcommand python-pbcore python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-schema-salad python-scitrack python-screed python-spectra python-sqlsoup python-sqt python-tinyalign python-treetime python-wordcloud python-xopen pyxid pyxnat q2-demux q2-feature-table q2-metadata q2-quality-filter q2templates q2-types qcat qcumber qrisk2 qsopt-ex qtltools quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr recan repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer segemehl seqmagick seqprep seqsero seqtools sga shapeit4 sibelia sibsim4 sickle sigma-align sim4 skesa skewer smalt smart-open smrtanalysis snakemake# snap snap-aligner sniffles snpomatic snp-sites soapaligner soapdenovo2 soapsnp socket++ sortmerna spaced spades spaln sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumalibs surankco sweed swissknife tantan t-coffee theseus thesias tifffile tigr-glimmer tm-align tnseq-transit toil toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle### treeviewx trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo umis unicycler varna vcftools velvetoptimiser virulencefinder vmatch volpack vsearch wise wtdbg2 xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.