maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 668 packages:
88 (13.2%) packages failed to build reproducibly: insighttoolkit4 ismrmrd# delly qiime primer3 spoa treeview crac bamtools pdb2pqr prime-phylo murasaki flexbar gbrowse# dicom3tools sitplus libqes phast bppphyview bppsuite maffilter liblemon soapdenovo iqtree ncbi-blast+ jmodeltest gatb-core estscan snakemake trinityrnaseq mummer emboss mira pixelmed# exonerate librostlab librostlab-blast sra-sdk golang-github-dataence-porter2 macsyfinder centrifuge libcereal libace-perl consensuscore cassiopee r-cran-tibble seqtk sleepyhead microbiomeutil metastudent-data python-csb autodock-vina elph libundead freebayes ncbi-entrez-direct g2 fastx-toolkit mapsembler2 raster3d fastp ginkgocadx mia grabix python-biopython jellyfish gdcm loki bowtie2 dcmtk r-cran-rsqlite r-cran-scales r-other-mott-happy libminc ball libpll odil ncbi-vdb axe-demultiplexer r-cran-tidyselect r-cran-purrr camitk ctsim freecontact logol r-cran-webutils clustalo vtk-dicom
20 (3.0%) packages failed to build from source: python-mne# seqan2 paleomix jaligner staden-io-lib artemis opensurgsim libbiod orthanc-wsi fw4spl librcsb-core-wrapper python-skbio libsbml blasr hinge seqan simpleitk pbbam# falcon pbdagcon
9 (1.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: sambamba mialmpick elastix gnumed-client fis-gtm igraph htslib## libdeflate picard-tools
551 (82.5%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden ariba artfastqgenerator art-nextgen-simulation-tools assemblytics augustus autodocksuite baitfisher bali-phy bambamc bandage barrnap bart bart-view bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools# berkeley-express biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bitseq bolt-lmm bowtie boxshade brig bwa cain camp canu cct cdbfasta cd-hit cfflib cgview changeo charls chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalw clustalx cnvkit codonw coils concavity conservation-code ctdconverter ctdopts ctn cwltool cycle cyvcf2 daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem epcr epigrass examl fast5 fastaq fastdnaml fastlink fastml fastqc fastqtl fasttree fermi-lite ffindex figtree fitgcp freemedforms-project fsa fsm-lite galileo garli gasic gdpc gemma genometester genometools gentle getdata gfapy gff2aplot gff2ps giira glam2 gnumed-server graphlan grinder gubbins gwama harvest-tools hhsuite hilive hisat2 hmmer hmmer2 htseq htsjdk hunspell-en-med hyphy idba imagej imagevis3d indelible infernal invesalius ipig iva jam-lib jebl2 jellyfish1 jheatchart kalign khmer kineticstools king king-probe kissplice kmc kmer kraken lagan lamarc lambda-align last-align lefse libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libmems libmialm libmuscle libncl liboptions-java libpal-java libpsortb libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libseqlib libsis-base-java libsis-jhdf5-java## libsmithwaterman libsort-key-top-perl libssw libstatgen libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libzeep libzerg libzerg-perl libzstd ltrsift lucy macs mapdamage maq maqview mash maude mauve-aligner maxflow mcl medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps minc-tools minia miniasm minimac4 minimap minimap2 mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mothur mptp mrbayes mriconvert muscle mustang mypy nanook nanopolish ncbi-seg ncbi-tools6 neobio ngs-sdk# njplot norsnet norsp nutsqlite opencfu openslide openslide-python orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-webviewer pal2nal paml papyrus paraclu parafly parsinsert parsnp patman pbalign pbbarcode pbcopper pbgenomicconsensus pbh5tools pbseqlib pbsim pbsuite pcalendar perlprimer perm pftools phipack phybin phylip phyml physamp phyutility phyx piler pilon pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 plip poa pondus populations porechop poretools pp-popularity-contest praat prank predictnls predictprotein proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pscan-tfbs psortb pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-biom-format python-biotools python-burrito python-bx python-bz2file python-clips python-cobra python-cogent python-colormap python-colormath python-cutadapt python-dendropy python-depinfo python-easydev python-fitbit python-freecontact python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-multipletau python-pbcommand python-pbcore python-pipdeptree python-pyfaidx python-pyflow python-pymummer python-pysam python-pyvcf python-qcli python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-spectra python-sqlsoup python-treetime python-xopen qcumber qrisk2 qsopt-ex qtltools quorum racon radiant rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier readseq reapr relion repeatmasker-recon reprof rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmon samtools samtools-legacy sbmltoolbox scrm scythe seaview seer segemehl seqmagick seqprep seqsero seqtools sga sibsim4 sickle sigma-align sim4 smalr smalt smrtanalysis snap snap-aligner# sniffles snpomatic snp-sites soapaligner soapdenovo2 soapsnp socket++ sofa-framework sortmerna spaced spades spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden subread suitename sumaclust sumatra surankco swarm-cluster sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align tnseq-transit tophat toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic tvc uc-echo unanimity unicycler varna vcftools velvet velvetoptimiser volpack vsearch wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.