Debian navigation

maint_debian-med package set for unstable/amd64

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in unstable/amd64
The package set maint_debian-med in unstable/amd64 consists of:
None 323 (43.1%) packages failed to build reproducibly: libgff r-cran-tibble python-pysam r-cran-bio3d r-cran-triebeard dcmtk emboss grinder r-cran-httpcode mira poa r-cran-ape r-bioc-rtracklayer r-bioc-biostrings gtable r-bioc-qvalue r-bioc-variantannotation r-cran-proto r-cran-qtl macs plastimatch r-cran-nnls r-cran-seroincidence r-cran-magrittr r-cran-etm r-cran-cmprsk python-pyvcf axe-demultiplexer r-cran-praise r-cran-data.table r-cran-htmlwidgets r-bioc-deseq2 hilive r-cran-testit r-cran-munsell libqes libcereal rapmap r-cran-batchjobs r-cran-deal r-cran-epitools r-cran-genetics r-cran-labeling r-cran-evaluate r-cran-psy r-bioc-biocparallel r-cran-epibasix r-cran-sendmailr r-cran-randomforest probabel orthanc-wsi r-cran-phangorn r-bioc-aroma.light camp r-bioc-biomformat r-cran-luminescence r-other-mott-happy r-cran-fail staden exonerate r-cran-plogr r-cran-memoise r-cran-withr r-cran-dbitest r-cran-stringr spades r-cran-blockmodeling maxflow opensurgsim r-cran-dplyr r-cran-phylobase r-cran-fitbitscraper r-bioc-mergeomics ciftilib r-cran-hexbin r-cran-shape r-cran-future charls r-cran-diagnosismed r-cran-epicalc r-bioc-genomeinfodb r-cran-medadherence r-cran-epir r-cran-scatterd3 r-bioc-genomicfeatures r-cran-openssl r-cran-futile.options r-bioc-rbgl altree jellyfish permute python-csb r-cran-rcurl r-cran-biasedurn r-cran-rngtools libhpptools papyrus r-cran-scales r-cran-fastcluster r-cran-gridbase r-cran-rentrez libvistaio r-bioc-biobase r-bioc-graph r-bioc-biocgenerics r-bioc-edger r-bioc-affyio r-bioc-genomicranges r-bioc-affy r-bioc-snpstats r-bioc-biocinstaller r-bioc-xvector r-bioc-preprocesscore r-cran-doparallel r-bioc-hypergraph r-bioc-multtest r-cran-pheatmap r-bioc-annotate logol r-bioc-altcdfenvs r-bioc-genomicalignments r-bioc-makecdfenv r-bioc-bsgenome r-bioc-biomart r-cran-truncnorm r-bioc-shortread r-cran-lambda.r r-cran-ade4 r-cran-bold r-cran-rredlist r-cran-pscbs r-cran-rlumshiny r-cran-haplo.stats r-bioc-hilbertvis velvet r-cran-seqinr r-bioc-ebseq r-cran-assertthat r-cran-rnexml r-cran-princurve r-bioc-go.db r-bioc-interactivedisplaybase libquazip mummer libbpp-core mapsembler2 r-cran-plyr r-cran-optparse macsyfinder r-cran-listenv r-bioc-dnacopy r-cran-httr r-cran-rotl r-cran-fitcoach bitops edfbrowser htseq libsbml openmolar r-cran-adegenet r-cran-distory python-pybedtools pdb2pqr pvrg-jpeg r-cran-dosefinding r-cran-beeswarm r-cran-ggplot2 r-cran-rniftilib r-bioc-phyloseq insighttoolkit4 librostlab-blast r-bioc-cummerbund r-cran-bbmisc r-cran-matrixstats r-cran-epi r-cran-rsqlite r-cran-stringi odil r-cran-xml2 ncbi-vdb python-schema-salad salmon r-cran-tidyr bamtools biococoa libace-perl primer3 r-cran-shiny microbiomeutil iqtree biojava-live metastudent-data freebayes g2 htslib++ orthanc-dicomweb orthanc-webviewer r-cran-fastmatch r-cran-r.oo bart r-cran-rncl r-cran-progress r-cran-prettyunits r-cran-urltools libbpp-phyl r-bioc-rsamtools r-bioc-biovizbase r-bioc-annotationdbi r-cran-surveillance r-bioc-s4vectors r-bioc-genefilter r-bioc-summarizedexperiment r-cran-lazyeval r-cran-taxize r-bioc-geneplotter r-cran-bbmle r-cran-minpack.lm r-cran-googlevis r-cran-irlba r-bioc-metagenomeseq r-cran-sourcetools r-cran-qqman r-cran-treescape r-cran-adephylo clustalo r-cran-fields r-cran-adegraphics r-cran-solrium r-cran-ritis dichromat pixelmed cassiopee fis-gtm libhmsbeagle r-cran-genabel r-cran-evd r-cran-rsolnp r-cran-r.methodss3 r-cran-reshape r-cran-rocr r-cran-vioplot r-cran-testthat r-cran-futile.logger r-cran-r.utils qtltoolsP gbrowse# hhsuite ncbi-blast+ r-cran-boolnet r-cran-vegan raster3d r-cran-reshape2 prime-phylo murasaki libminc minc-tools trinityrnaseq r-cran-globals r-cran-backports r-bioc-limma dicom3tools snakemake camitk elastix gdcm ginkgocadx invesalius kissplice librostlab orthanc pyscanfcs python-casmoothing python-cogent qiime sitplus mia python-biopython vtk-dicom ismrmrd stacks r-cran-igraph orthanc-postgresql r-cran-crayon python-skbio blasr pbbam r-cran-htmltools jmodeltest r-cran-r.cache r-cran-rglwidget beast-mcmc r-cran-shinybs consensuscore r-cran-ellipse r-cran-raster r-cran-nmf r-cran-registry r-cran-pkgmaker liblemon r-cran-cairo r-bioc-savr r-cran-filehash r-cran-tikzdevice seqan2 r-cran-png kmer python-biom-format r-bioc-gviz r-cran-checkmate r-cran-worrms r-cran-natserv r-cran-crul mriconvert pvclust r-cran-brew r-cran-catools r-cran-genabel.data r-cran-combinat r-cran-g.data r-cran-hwriter sra-sdk treeview crac
None 11 (1.5%) packages failed to build from source: mash paleomix libsis-jhdf5-java python-biomaj3 mptp pbcopper pycorrfit python-multipletau qrisk2 r-cran-segmented rate4site
None 415 (55.4%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment amap-align amide ampliconnoise andi anfo aragorn arden ariba artemis artfastqgenerator art-nextgen-simulation-tools augustus autodocksuite autodock-vina baitfisher bambamc barrnap bcftools beagle beast2-mcmc bedops bedtools berkeley-express bio-eagle biomaj bioperl bioperl-run bio-rainbow biosquid bio-tradis bowtie bowtie2 boxshade brig bwa cain canu cdbfasta cd-hit cgview circlator circos circos-tools clearcut clonalframe clustalw clustalx codonw coils concavity conservation-code ctn ctsim cwltool daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edflib edtsurf eigensoft emboss-explorer epcr epigrass falcon fast5 fastaq fastdnaml fastlink fastml fastqc fastqtl fasttree fastx-toolkit fermi-lite ffindex figtree fitgcp flexbar freemedforms-project fsa fsm-lite galileo gasic gdpc genometools gentle gff2aplot gff2ps giira glam2 gnumed-client gnumed-server graphlan gubbins gwyddion harvest-tools hisat2 hmmer hmmer2 htsjdk hunspell-en-med idba igraph imagej imagevis3d indelible infernal iva jaligner jam-lib jebl2 kalign khmer kineticstools king king-probe kmc kraken lambda-align last-align lefse libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl# libcolt-free-java libctapimkt libdisorder libdivsufsort libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libics libjloda-java libjung-free-java libkmlframework-java libmems libmialm libmuscle libncl liboptions-java libpal-java librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libsis-base-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libvcflib libzeep libzerg libzerg-perl libzstd loki ltrsift maffilter mafft mapdamage maq maqview maude mauve-aligner mcl melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps minia miniasm minimap mlv-smile mobyle mobyle-programs mobyle-tutorials mrbayes mrs muscle mustang mypy nanopolish ncbi-seg ncbi-tools6 neobio ngs-sdk njplot norsnet norsp nutsqlite opencfu openslide openslide-python orthanc-imagej paml paraclu parafly parsinsert parsnp pbalign pbbarcode pbdagcon pbgenomicconsensus pbh5tools pbseqlib pbsim pbsuite pcalendar perlprimer perm phipack phybin phylip phyml physamp phyutility picard-tools piler pirs pixelmed-codec placnet plasmidomics plast plink plink1.9 plip pondus poretools pp-popularity-contest praat prank predictnls predictprotein proalign probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pymia pynast pyqi python3-typed-ast python-avro python-biotools python-burrito python-bz2file python-clips python-cutadapt python-dendropy python-dictobj python-fitbit python-freecontact python-gffutils python-hl7 python-intervaltree-bio python-matplotlib-venn python-mne python-pbcommand python-pbcore python-pyfaidx python-pyflow python-pymummer python-qcli python-rdflib-jsonld python-ruffus python-screed python-xopen qcumber qsopt-ex radiant rambo-k raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr relion repeatmasker-recon reprof rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa samtools sbmltoolbox scrm scythe seaview seer seqan seqprep sga sibsim4 sickle sigma-align sim4 sleepyhead smalt smrtanalysis snap snap-aligner sniffles snpomatic snp-sites soapdenovo2 socket++ sofa-framework sortmerna spaced spdlog sprai spread-phy squizz srst2 ssake sspace staden-io-lib subread suitename sumaclust sumatra surankco swarm-cluster tantan t-coffee theseus tifffile tigr-glimmer tm-align tnseq-transit tophat toppred transdecoder transrate-tools transtermhp tree-puzzle trimmomatic varna vcftools velvetoptimiser visionegg volpack vsearch wise xmedcon yaggo zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.