maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 974 packages:
107 (11.0%) packages failed to build reproducibly: dcmtk subread+ assembly-stats biojava6-live heudiconv cmtk sumaclust salmon btllib libcereal hmmer libace-perl mothur sumatra ball nthash seqan-needle nifticlib igraph maffilter python-skbio insighttoolkit4 cyvcf2 odil bppsuite consensuscore jellyfish mosdepth liblemon insighttoolkit5 cassiopee swarm-cluster lumpy-sv megahit seqan3 mrtrix3 bppphyview gifticlib murasaki gatb-core pydicom civetweb librostlab libpll elastix sight macsyfinder axe-demultiplexer prime-phylo raster3d libgdf dicom3tools odin twopaco autodock-vina simka sambamba dextractor spoa exonerate vtk-dicom survivor python-cogent propka logol phast libwfa2 simrisc gatk-fermilite shasta mira genomicsdb gbrowse gatk-bwamem hts-nim-tools treeview bamtools q2-taxa emboss mia ncbi-entrez-direct parallel metastudent-data gdcm mapsembler2 xenium libgclib biojava5-live nipy nitime ismrmrd# fis-gtm ska biojava-live ctsim libminc libqes ncbi-blast+ fasta3 ncbi-igblast g2 iqtree freecontact pdb2pqr pftools python-pysam bustools
10 (1.0%) packages failed to build from source: cwltool pynwb tnseq-transit rna-star vg snippy anfo libgoby-java camitk snakemake
2 (0.2%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 pplacer
855 (87.8%) packages successfully build reproducibly: abacas abpoa abyss acedb adapterremoval adun.app aegean aeonbits-owner aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh ariba artemis artfastqgenerator art-nextgen-simulation-tools assemblytics ataqv atropos augur augustus autodocksuite baitfisher bali-phy bambamc bamclipper bamkit bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biobambam2 biococoa bio-eagle biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq blasr bmtk bolt-lmm bowtie bowtie2 boxshade brian brig busco bwa camp canu capsule-maven-nextflow capsule-nextflow castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind ctn cutesv cwlformat cycle daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med deepnano delly density-fitness dialign dialign-t diamond-aligner dicomnifti dicomscope dipy discosnp disulfinder dnaclust dnapi dnarrange drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr epigrass estscan examl fast5 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar flye freebayes fsa fsm-lite galileo garli gasic gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hunspell-en-med hyphy icb-utils idba idseq-bench igdiscover igor igv iitii illustrate imagej imbalanced-learn indelible infernal insilicoseq intake invesalius ipig iva ivar jaligner jam-lib jebl2 jellyfish1 jheatchart jmodeltest kalign kallisto# kaptive khmer kineticstools king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libamplsolver libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libmaus2 libmcfp libmems libmialm libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsbml libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy macs mafft malt mapdamage maq maqview mash maude mauve-aligner mcaller mcl mecat2 medicalterms megadepth megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimac4 minimap minimap2 mipe mirtop mlv-smile mmseqs2 mptp mrbayes mrc mriconvert mricron multiqc mummer muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-seg ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nim-hts nim-kexpr nim-lapper nipype njplot norsnet norsp ntcard nutsqlite nxtrim obitools ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar peptidebuilder perlprimer perm phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore pigx-rnaseq piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka proteinortho prottest provean pscan-chip pscan-tfbs psignifit psortb psychopy pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pyensembl pyfastx pymia pynn pyode pyqi pyranges pyscanfcs pysurfer python-alignlib python-anndata python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-cooler python-csb python-cutadapt python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-intervaltree-bio python-iow python-leidenalg python-loompy python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-alignment q2cli q2-cutadapt q2-dada2 q2-demux q2-diversity-lib q2-emperor q2-feature-classifier q2-feature-table q2-fragment-insertion q2-metadata q2-phylogeny q2-quality-control q2-quality-filter q2-sample-classifier q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid roary rockhopper roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus sepp seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shapeit4 shovill sibelia sibsim4 sickle sigma-align sigviewer sim4 simde skesa skewer smalt smrtanalysis snap snap-aligner sniffles snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog sprai spread-phy squizz sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie suitename sumalibs surankco surpyvor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast theseus thesias tiddit tigr-glimmer tipp tm-align toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo umap-learn umis uncalled unicycler unifrac unifrac-tools unikmer varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt wham-align wise wtdbg2 xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.