maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of:
110 (16.1%) packages failed to build reproducibly: libminc libpll macsyfinder axe-demultiplexer clustalo iqtree mia ctsim freecontact qiime odil primer3 crac libcereal pdb2pqr bamtools elastix sitplus dcmtk fis-gtm phast libqes cassiopee flexbar python-biopython bppsuite maffilter liblemon simpleitk gbrowse# bppphyview soapdenovo ncbi-entrez-direct centrifuge golang-github-dataence-porter2 snakemake mummer sra-sdk ffindex mira exonerate librostlab-blast librostlab murasaki consensuscore libace-perl seqtk ismrmrd# jellyfish sleepyhead gatb-core libundead metastudent-data microbiomeutil elph freebayes python-csb autodock-vina libhpptools treeview ncbi-vdb imagej jam-lib liboptions-java jebl2 jheatchart emboss python-pbcommand raster3d fw4spl g2 logol grabix dicom3tools gdcm libpal-java mapsembler2 spoa fastx-toolkit prime-phylo ginkgocadx htslib## r-bioc-affy r-cran-evd r-cran-haplo.stats r-bioc-genefilter r-cran-dplyr r-cran-luminescence r-bioc-deseq2 loki bowtie2 vtk-dicom r-cran-rsqlite r-cran-scales r-cran-surveillance r-other-mott-happy r-cran-webutils r-cran-wavethresh r-cran-waveslim r-cran-phylobase r-cran-raster r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-purrr r-bioc-shortread r-bioc-makecdfenv r-bioc-variantannotation edfbrowser ncbi-blast+
31 (4.5%) packages failed to build from source: python-mne# delly seqan seqan2 pbdagcon phybin insighttoolkit4 igraph falcon hinge trinityrnaseq pixelmed# pbbam# libbiod librcsb-core-wrapper figtree artemis blasr camitk rapmap salmon libsbml picard-tools libbpp-seq libstatgen libbpp-core libncl ball python-skbio opensurgsim jmodeltest
3 (0.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: biojava4-live sambamba gemma
538 (78.9%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden ariba artfastqgenerator art-nextgen-simulation-tools assemblytics augustus autodocksuite baitfisher bali-phy bambamc bandage barrnap bart bart-view bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools# berkeley-express biococoa bio-eagle biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bitseq bolt-lmm bowtie boxshade brig bwa cain camp canu cct cdbfasta cd-hit cfflib cgview charls chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalw clustalx cnvkit codonw coils concavity conservation-code ctdconverter ctdopts ctn cwltool cycle cyvcf2 daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem epcr epigrass examl fast5 fastaq fastdnaml fastlink fastml fastqc fastqtl fasttree fermi-lite fitgcp freemedforms-project fsa fsm-lite galileo garli gasic gdpc genometester genometools gentle getdata gfapy gff2aplot gff2ps giira glam2 gnumed-client gnumed-server graphlan grinder gubbins gwama gwyddion harvest-tools hhsuite hilive hisat2 hmmer hmmer2 htseq htsjdk hunspell-en-med hyphy idba imagevis3d indelible infernal invesalius ipig iva jaligner jellyfish1 kalign khmer kineticstools king king-probe kissplice kmc kmer kraken lamarc lambda-align last-align lefse libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libmems libmialm libmuscle libpsortb libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libseqlib libsis-base-java libsis-jhdf5-java## libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libzeep libzerg libzerg-perl libzstd ltrsift lucy macs mafft mapdamage maq maqview mash maude mauve-aligner maxflow mcl medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps minc-tools minia miniasm minimac4 minimap mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mothur mptp mrbayes mriconvert mrs muscle mustang mypy nanook nanopolish ncbi-seg ncbi-tools6 neobio ngs-sdk# njplot norsnet norsp nutsqlite opencfu openslide openslide-python orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-webviewer orthanc-wsi pal2nal paleomix paml papyrus paraclu parafly parsinsert parsnp patman pbalign pbbarcode pbcopper pbgenomicconsensus pbh5tools pbseqlib pbsim pbsuite pcalendar perlprimer perm pftools phipack phylip phyml physamp phyutility phyx piler pilon pirs pixelmed-codec placnet plasmidomics plast plastimatch plink plink1.9 plip poa pondus populations porechop poretools pp-popularity-contest praat prank predictnls predictprotein proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pscan-tfbs psortb pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-bd2k python-biom-format python-biotools python-burrito python-bx python-bz2file python-clips python-cobra python-cogent python-colormap python-colormath python-cutadapt python-dendropy python-depinfo python-easydev python-fitbit python-freecontact python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-multipletau# python-pbcore python-pipdeptree python-pyfaidx python-pyflow python-pymummer python-pysam python-pyvcf python-qcli python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-spectra python-sqlsoup python-treetime python-xopen qcumber qrisk2 qsopt-ex qtltools quorum racon radiant rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr relion repeatmasker-recon reprof rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint samtools samtools-legacy sbmltoolbox scrm scythe seaview seer seqmagick seqprep seqsero seqtools sga sibsim4 sickle sigma-align sim4 smalr smalt smrtanalysis snap snap-aligner# sniffles snpomatic snp-sites soapaligner soapdenovo2 soapsnp socket++ sofa-framework sortmerna spaced spades spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib subread suitename sumaclust sumatra surankco swarm-cluster sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align tnseq-transit tophat toppred trace2dbest transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic tvc uc-echo unicycler varna vcftools velvet velvetoptimiser visionegg volpack vsearch wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.