maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 705 packages:
84 (11.9%) packages failed to build reproducibly: trinityrnaseq nitime libqes treeview mira mummer maffilter g2 vtk-dicom cassiopee ismrmrd# delly htslib## libace-perl sra-sdk phast seqtk metastudent-data soapdenovo estscan mapsembler2 pdb2pqr cyvcf2 libcereal snakemake+ plip dicom3tools mypy bedtools hmmer iqtree elastix freecontact infernal gdcm ncbi-blast+ libgclib gatb-core librostlab-blast loki autodock-vina insighttoolkit4 hyphy mcl consensuscore dcmtk libzeep bppsuite crac bamtools microbiomeutil prime-phylo raster3d libundead clustalo fis-gtm ginkgocadx librostlab lambda-align simka centrifuge seqan3 axe-demultiplexer libminc ncbi-vdb sight odil libpll libbiod minia primer3 pbseqlib bppphyview ctsim gbrowse swarm-cluster mia oscar flexbar spoa emboss freebayes bowtie2 camitk
37 (5.2%) packages failed to build from source: opencfu gemma libbpp-popgen conda-package-handling ariba uc-echo simpleitk unanimity igdiscover paleomix libgtextutils python-deeptoolsintervals libstatgen seqan2 pbdagcon opensurgsim jmodeltest ball samtools-legacy artemis ncbi-entrez-direct libsbml logol jellyfish relion picard-tools liblemon orthanc-postgresql murasaki tree-puzzle python-skbio umis seqan macsyfinder python-sqt sumaclust salmon
9 (1.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: freemedforms-project pbgenomicconsensus smalr pynast pbbarcode pbh5tools kineticstools falcon plastimatch
575 (81.6%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden artfastqgenerator art-nextgen-simulation-tools assemblytics atropos augustus autodocksuite baitfisher bali-phy bambamc bandage barrnap bart bart-view bbmap bcftools### beads beagle beast2-mcmc beast-mcmc bedops berkeley-express biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bitseq blasr bolt-lmm bowtie boxshade brig bwa cain camp canu cct cdbfasta cd-hit cfflib cgview changeo charls chromhmm chromimpute ciftilib circlator circos-tools clearcut clonalframe clonalframeml clonalorigin clustalw clustalx cnvkit codonw coils concavity conservation-code ctdconverter ctdopts ctn cycle daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domsearch emboss-explorer e-mem epigrass examl fast5 fastaq fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree fitgcp fsa fsm-lite galileo garli gasic gdpc genometester genometools gentle getdata gfapy gff2aplot gff2ps gffread ghmm giira gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan gubbins gwama gwyddion harvest-tools hhsuite hilive hinge hisat2 hmmer2 hopscotch-map htseq htsjdk hunspell-en-med idba igor igraph imagej indelible invesalius ipig iva jaligner jam-lib jebl2 jellyfish1 jheatchart kalign kallisto kaptive khmer king king-probe kissplice kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align2 last-align lefse libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-phyl-omics libbpp-qt libbpp-raa libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libmaus2 libmems libmialm libmurmurhash libmuscle libncl liboptions-java libpal-java libpsortb libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl libseqlib libsis-base-java libsis-jhdf5-java## libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libzerg libzerg-perl libzstd ltrsift lucy macs mafft mapdamage maq mash maude mauve-aligner maxflow medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps milib minc-tools miniasm minimac4 minimap minimap2 mipe mirtop mlv-smile mmseqs2 mothur mptp mrbayes mriconvert mrs muscle mustang nanook nanopolish ncbi-seg neobio ngs-sdk# njplot norsnet norsp nutsqlite obitools openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-webviewer orthanc-wsi pal2nal paml papyrus paraclu parafly parsinsert parsnp patman pbalign pbbam# pbcopper pbsim pbsuite pcalendar perlprimer perm pftools phipack phybin phylip phylonium phyml physamp phyutility phyx piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 poa populations porechop poretools pp-popularity-contest praat prank predictprotein proalign probabel probalign probcons proda prodigal profisis profnet profphd profphd-utils progressivemauve prokka proteinortho prottest pscan-chip pscan-tfbs psortb pvrg-jpeg pybigwig pycorrfit pymia pyqi pyscanfcs python3-typed-ast python-avro python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-cobra python-cogent python-colormap python-colormath python-csb python-cutadapt python-dendropy python-depinfo python-dnaio python-easydev python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-mypy-extensions python-pbcommand python-pbcore python-pipdeptree python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam# python-pyvcf python-rdflib-jsonld python-ruffus python-schema-salad python-scitrack python-screed python-spectra python-sqlsoup python-treetime python-xopen q2cli q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2templates q2-types qcumber qiime qrisk2 qsopt-ex qtltools# quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samtools sbmltoolbox scoary scrm scythe seer segemehl seqmagick seqprep seqsero seqtools sga shapeit4 sibsim4 sickle sigma-align sim4 skesa skewer smalt smrtanalysis snap snap-aligner# sniffles snpomatic snp-sites soapaligner soapdenovo2 soapsnp socket++ sofa-framework sortmerna spaced spades spaln spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumatra surankco sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align# tnseq-transit toil tophat toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trim-galore trimmomatic tvc unicycler varna vcftools velvet velvetoptimiser virulencefinder volpack vsearch wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.