maint_debian-med package set for unstable/amd64
Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:
-
maint_debian-accessibility
-
maint_debian-boot
-
maint_debian-lua
-
maint_debian-med
-
maint_debian-ocaml
-
maint_debian-python
-
maint_debian-qa
-
maint_debian-science
-
maint_debian-x
-
maint_pkg-android-tools-devel
-
maint_pkg-fonts-devel
-
maint_pkg-games-devel
-
maint_pkg-golang-maintainers
-
maint_pkg-grass-devel
-
maint_pkg-haskell-maintainers
-
maint_pkg-java-maintainers
-
maint_pkg-javascript-devel
-
maint_pkg-multimedia-maintainers
-
maint_pkg-perl-maintainers
-
maint_pkg-php-pear
-
maint_pkg-openstack
-
maint_pkg-ruby-extras-maintainers
The package set maint_debian-med in
unstable/amd64 consists of 894 packages:
110 (12.3%) packages
failed to build reproducibly:
librostlab-blast
libzeep
libminc
bppphyview
elastix
libqes
pydicom
mcl
sra-sdk
ivar
mia
ball
libgclib
kissplice
megahit
simka
fis-gtm
libcereal
python-cogent
lumpy-sv
odin
shasta
python-anndata
gbrowse
primer3
prime-phylo
seqtk
opensurgsim
maffilter
gdcm
freecontact
odil
pftools
g2
murasaki
swarm-cluster
nitime
axe-demultiplexer
delly
survivor
spoa
ismrmrd#
libstatgen
sumaclust
ncbi-vdb
bustools
seqan2#
logol
nipype
salmon
camitk
cassiopee
civetweb
liblemon
hhsuite
sumatra
fasta3
cif-tools
bmtk
metastudent-data
libsbml
minia
pdb2pqr
gatb-core
ctsim
autodock-vina
macs
sambamba
artemis
gifticlib
dcmtk
dextractor
librostlab
treeview
mypy
libatomic-queue
centrifuge
mapsembler2
jellyfish
klustakwik
consensuscore
hyphy
ginkgocadx
hmmer
nifticlib
dicom3tools
vtk-dicom
xenium
seqan3
libace-perl
nipy
brian
exonerate
hts-nim-tools
bamtools
bppsuite
libvcflib
htslib##
insighttoolkit4
simrisc
mosdepth
iqtree
emboss
mira
raster3d
ncbi-blast+
phast
libpll
pigx-rnaseq
ncbi-entrez-direct
9 (1.0%) packages
failed to build from source:
bali-phy
spdlog
python-streamz
conda-package-handling
cwltool
simpleitk
pynn#
vg
macsyfinder
5 (0.6%) packages
are either in depwait state, blacklisted, not for us, or cannot be downloaded:
sofa-framework
orthanc
falcon
orthanc-dicomweb
multiqc
770 (86.1%) packages
successfully build reproducibly:
abacas
abyss
acedb
adapterremoval
adun.app
aegean
aeskulap
aevol
aghermann
alien-hunter
allelecount
alter-sequence-alignment
altree
amap-align
amide
ampliconnoise
andi
anfo
aragorn
arcp
arden
argh
ariba
artfastqgenerator
art-nextgen-simulation-tools
assembly-stats
assemblytics
ataqv
atropos
augur
augustus
autodocksuite
baitfisher
bambamc
bamkit
bandage
barrnap
bart
bart-view
bbhash
bbmap
bcalm
bcftools###
beads
beagle
beast2-mcmc
beast-mcmc
bedops
bedtools
berkeley-express
biobambam2
biococoa
bio-eagle
biojava4-live
biojava-live
biomaj3
biomaj3-cli
biomaj3-core
biomaj3-daemon
biomaj3-download
biomaj3-process
biomaj3-user
biomaj3-zipkin
bioperl
bioperl-run
bio-rainbow
biosig
biosquid
biosyntax
bio-vcf
bitseq
blasr
bolt-lmm
bowtie
bowtie2
boxshade
brig
busco
bwa
camp
canu
cat-bat
cct
cdbfasta
cd-hit
cgview
changeo
charls
chip-seq
chromhmm
chromimpute
ciftilib
circlator#
circos
circos-tools
clearcut
clonalframe
clonalframeml
clonalorigin
clustalo
clustalw
clustalx
cnvkit
codonw
coils
concavity
concurrentqueue
conservation-code
covtobed
crac
ctdconverter
ctdopts
ctn
cwlformat
daligner
damapper
dascrubber
dawg
dazzdb
dcm2niix
debian-med
deepnano
density-fitness
dialign
dialign-t
diamond-aligner
dicomnifti
dicompyler
dicomscope
dipy
discosnp
disulfinder
dnaclust
dnapi
drmaa
drop-seq
dssp
dwgsim
ea-utils
ecopcr
edfbrowser
edflib
edtsurf
eegdev
eigensoft
elph
embassy-domainatrix
embassy-domalign
embassy-domsearch
emboss-explorer
e-mem
emmax
enlighten
epcr
epigrass
estscan
examl
fast5
fastaq
fastdnaml
fastlink
fastml
fastp
fastqc
fastqtl
fasttree
fermi-lite
ffindex
figtree
filtlong
fitgcp
flash
flexbar
freebayes
fsm-lite
galileo
garli
gasic
gdpc
gemma
genometester
genomethreader
genometools
gentle
getdata
gff2aplot
gff2ps
gffread
ggd-utils
ghmm
gjh-asl-json
glam2
gmap
gnumed-client
gnumed-server
golang-github-dataence-porter2
grabix
graphlan
grinder
gsort
gubbins
gwama
gwyddion
h5sparse
harvest-tools
hdmf
hilive
hinge
hisat2
hmmer2
hnswlib
hopscotch-map
htscodecs
htseq
htsjdk
hunspell-en-med
idba
idseq-bench
igdiscover
igor
igraph
iitii
imagej
indelible
infernal
invesalius
ipig
iva
jaligner
jam-lib
jebl2
jellyfish1
jheatchart
jmodeltest
kalign
kallisto
kaptive
khmer
kineticstools
king
king-probe
kleborate
kma
kmc
kmer
kmerresistance
kraken
kraken2
lagan
lamarc
lambda-align
lambda-align2
last-align
lastz
lefse
libamplsolver
libargs
libatomicbitvector
libbigwig
libbio-alignio-stockholm-perl
libbio-cluster-perl
libbio-coordinate-perl
libbio-das-lite-perl
libbio-db-embl-perl
libbio-db-hts-perl
libbio-db-ncbihelper-perl
libbio-featureio-perl
libbio-graphics-perl
libbio-mage-perl
libbio-mage-utils-perl
libbioparser-dev
libbio-tools-run-remoteblast-perl
libbpp-core
libbpp-phyl
libbpp-popgen
libbpp-qt
libbpp-raa
libbpp-seq
libbpp-seq-omics
libchado-perl
libcifpp
libcolt-free-java
libctapimkt
libdeflate
libdisorder
libdistlib-java
libdivsufsort
libedlib
libfastahack
libflathashmap
libfreecontact-perl
libgenome
libgenome-model-tools-music-perl
libgenome-perl
libgff
libgkarrays
libgo-perl
libgtextutils
libgzstream
libhac-java
libhat-trie
libhmsbeagle
libhpptools
libics
libips4o
libjbzip2-java
libjloda-java
libjung-free-java
libkmlframework-java
libla4j-java
libmaus2
libmems
libmialm
libmmap-allocator
libmmmulti
libmurmurhash
libmuscle
libncl
libnewuoa
liboptions-java
libpal-java
libpdb-redo
libpj-java
libpsortb
libquazip
librandom123
librcsb-core-wrapper
librdp-taxonomy-tree-java
librg-blast-parser-perl
librg-exception-perl
librg-utils-perl
libsecrecy
libseqlib
libsis-base-java
libsis-jhdf5-java
libsmithwaterman
libsort-key-top-perl
libssw
libtabixpp
libtecla
libtfbs-perl
libthread-pool
libvistaio
libxdf
libzerg
libzerg-perl
libzstd
lighter
loki
ltrsift
lucy
mafft
mapdamage
maq
maqview
mash
maude
mauve-aligner
mecat2
medicalterms
melting
mencal
metabat
metaphlan2
metaphlan2-data
metastudent
metastudent-data-2
mhap
miaviewit
microbegps
microbiomeutil
milib
minc-tools
mindthegap
miniasm
minimac4
minimap
minimap2
mipe
mirtop
mlv-smile
mmseqs2
mothur
mptp
mrbayes
mrc
mriconvert
mricron
mummer
muscle
mustang
nanofilt
nanolyse
nanook
nanopolish
nanostat
nanosv
ncbi-acc-download
ncbi-seg
ncbi-tools6
neo
neobio
ngmlr
ngs-sdk
nibabel
nifti2dicom
nim-hts
nim-kexpr
nim-lapper
njplot
norsnet
norsp
nutsqlite
obitools
opencfu
openslide
openslide-python
optimir
orthanc-gdcm
orthanc-imagej
orthanc-mysql
orthanc-postgresql
orthanc-python
orthanc-webviewer
orthanc-wsi
oscar
pairtools
pal2nal
paleomix
paml
papyrus
paraclu
parafly
parallel-fastq-dump
parasail
parsinsert
parsnp
paryfor
patman
patsy
pbbam
pbcopper
pbdagcon
pbsim
pbsuite
pcalendar
peptidebuilder
perlprimer
perm
phipack
phybin
phylip
phylonium
physamp
phyutility
phyx
picard-tools
picopore
piler
pilercr
pilon
pinfish
pique
pirs
pixelmed
pixelmed-codec
pizzly
placnet
plasmidid
plasmidomics
plasmidseeker
plast
plastimatch
plink
plink1.9
plink2
plip
poa
populations
porechop
poretools
pplacer
pp-popularity-contest
praat
prank
predictnls
presto
prinseq-lite
proalign
probabel
probalign
probcons
proda
prodigal
profbval
profisis
profnet
profphd
profphd-utils
proftmb
progressivemauve
prokka
proteinortho
prottest
pscan-chip
pscan-tfbs
psignifit
psortb
psychopy
pvrg-jpeg
pybel
pybigwig
pychopper
pycoqc
pycorrfit
pymia
pyode
pyqi
pyranges
pyrle
pyscanfcs
pysurfer
python-avro
python-bcbio-gff
python-bel-resources
python-bids-validator
python-biom-format
python-biopython
python-bx
python-bz2file
python-cgecore
python-ciso8601
python-cobra
python-colormap
python-colormath
python-csb
python-cutadapt
python-deeptools
python-deeptoolsintervals
python-dendropy
python-depinfo
python-dicompylercore
python-dnaio
python-duckpy
python-easydev
python-ete3
python-etelemetry
python-fitbit
python-freecontact
python-geneimpacts
python-gffutils
python-hdmedians
python-hl7
python-intervaltree-bio
python-loompy
python-matplotlib-venn
python-mne
python-multipletau
python-multisplitby
python-nanoget
python-nanomath
python-ncls
python-pairix
python-parasail
python-pauvre
python-pbcommand
python-pbcore
python-pipdeptree
python-py2bit
python-pyani
python-pybedtools
python-pycosat
python-pyflow
python-pymummer
python-pynndescent
python-pypubsub
python-pysam
python-pyvcf
python-questplus
python-rdflib-jsonld
python-ruffus
python-scitrack
python-skbio
python-spectra
python-sqlsoup
python-sqt
python-stubserver
python-tinyalign
python-treetime
python-wdlparse
python-wordcloud
python-xopen
pyxid
pyxnat
q2-alignment
q2-cutadapt
q2-dada2
q2-demux
q2-feature-classifier
q2-feature-table
q2-metadata
q2-quality-control
q2-quality-filter
q2-sample-classifier
q2-taxa
q2templates
qcat
qcumber
qiime
qrisk2
qsopt-ex
qtltools
quicktree
quitcount
quorum
radiant
ragout
rambo-k
rampler
rapmap
rate4site
raxml
ray
rdp-alignment
rdp-classifier
rdp-readseq
readerwriterqueue
readseq
readucks
reapr
recan
relacy
relion
repeatmasker-recon
reprof
resfinder
resfinder-db
rnahybrid
rna-star
roary
roguenarok
routine-update
rsem
rtax
ruby-rgfa
runcircos-gui
saint
salmid
samblaster
samclip
samtools
samtools-legacy
sbmltoolbox
scoary
scrappie
scrm
scythe
seer
segemehl
seirsplus
sepp
seqkit
seqmagick
seqprep
seqsero
seqtools
seriation
sga
shapeit4
shovill
sibelia
sibsim4
sickle
sigma-align
sigviewer
sim4
simde
skesa
skewer
smalt
smart-open
smrtanalysis
snakemake
snap
snap-aligner
sniffles
snpomatic
snp-sites
soapaligner
soapdenovo
soapdenovo2
soapsnp
socket++
sorted-nearest
sortmerna
spaced
spades
spaln
sphinxcontrib-autoprogram
sprai
spread-phy
squizz
srf
srst2
ssake
sspace
stacks
staden
staden-io-lib
stringtie
subread
suitename
sumalibs
surankco
svim
sweed
swissknife
tantan
tao-config
tao-json
t-coffee
theseus
thesias
tiddit
tigr-glimmer
tm-align
tnseq-transit
toil
tombo
tophat-recondition
toppred
tortoize
trace2dbest
tracetuner
transdecoder
transrate-tools
transtermhp
tree-puzzle
treeviewx
trf
trim-galore
trimmomatic
trinculo
trinityrnaseq
tvc
uc-echo
umap-learn
umis
uncalled
unicycler
varna
vcfanno
vcftools
velvet
velvetoptimiser
virulencefinder
vmatch
volpack
vsearch
vt
wham-align
wise
wtdbg2
xdffileio
xmedcon
yaggo
yaha
yanagiba
yanosim
zalign
A package name displayed with a bold
font is an indication that this package has a note. Visited
packages are linked in green, those which have not been visited are
linked in blue.
A #
sign after the name of a package
indicates that a bug is filed against it. Likewise, a
+
sign indicates there is a
patch available, a P
means a
pending bug while #
indicates a
closed bug. In cases of several bugs, the symbol is repeated.