Debian navigation

maint_debian-med package set for unstable/amd64

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in unstable/amd64
The package set maint_debian-med in unstable/amd64 consists of:
None 86 (10.9%) packages failed to build reproducibly: qtltoolsP jmodeltest fw4spl altree bamtools cassiopee camitk dcmtk elastix libhpptools libbiod exonerate freecontact gdcm ginkgocadx grinder hhsuite htseq invesalius jellyfish libace-perl librostlab librostlab-blast axe-demultiplexer beast-mcmc mia pdb2pqr prime-phylo probabel python-csb sitplus velvet vtk-dicom emboss ismrmrd# macsyfinder python-cobra opensurgsim libminc python-pyvcf libqes libcereal odil python-schema-salad# consensuscore hilive liblemon python-biom-format snakemake insighttoolkit4 logol clustalo ncbi-entrez-direct python-pysam mapsembler2 mummer libsbml openmolar python-pybedtools quorum biojava-live# microbiomeutil metastudent-data iqtree fis-gtm gbrowse# ncbi-blast+ pixelmed raster3d trinityrnaseq dicom3tools pyscanfcs python-cogent python-biopython qiime python-skbio seqan2+ r-cran-diagnosismed r-cran-fastcluster r-cran-lambda.r r-cran-futile.logger treeview crac+ macs mira pycorrfit
None 8 (1.0%) packages failed to build from source: aribaP libsis-jhdf5-java## mptp ball python-biomaj3 r-bioc-gviz paleomix seqan
None None None None 2 (0.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: psortb libpsortb
None 691 (87.8%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment amap-align amide ampliconnoise andi anfo aragorn arden artemis artfastqgenerator art-nextgen-simulation-tools augustus autodocksuite autodock-vina baitfisher# bambamc barrnap bart bcftools# beagle bedops bedtools berkeley-express biococoa bio-eagle biojava4-live biomaj bioperl bioperl-run bio-rainbow biosquid bio-tradis bitops blasr bowtie bowtie2 boxshade brig bwa cain camp canu cdbfasta cd-hit cgview charls ciftilib circlator circos circos-tools clearcut clonalframe clustalw clustalx codonw coils concavity conservation-code ctn ctsim cwltool daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dichromat dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem epcr epigrass examl falcon fast5 fastaq fastdnaml fastlink fastml fastqc fastqtl fasttree fastx-toolkit fermi-lite ffindex figtree filo fitgcp flexbar freebayes freemedforms-project fsa fsm-lite g2 galileo garli gasic gdpc genometools gentle gff2aplot gff2ps giira glam2 gnumed-client gnumed-server graphlan gtable gubbins gwama gwyddion harvest-tools hisat2 hmmer hmmer2 htsjdk htslib++ hunspell-en-med hyphy idba igraph imagej imagevis3d indelible infernal ipig iva jaligner jam-lib jebl2 kalign khmer kineticstools king king-probe kissplice kmc kmer kraken lambda-align last-align libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl# libcolt-free-java libctapimkt libdisorder libdivsufsort libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libics libjloda-java libjung-free-java libkmlframework-java libmems libmialm libmuscle libncl liboptions-java libpal-java libpll# libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libsis-base-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libundead libvcflib libvistaio libzeep libzerg libzerg-perl libzstd loki ltrsift maffilter mafft mapdamage maq maqview mash maude mauve-aligner maxflow mcl melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps minc-tools minia miniasm minimap mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mothur mrbayes mriconvert mrs murasaki muscle mustang mypy nanopolish ncbi-seg ncbi-tools6 ncbi-vdb neobio ngs-sdk# njplot norsnet norsp nutsqlite opencfu openslide openslide-python orthanc orthanc-dicomweb orthanc-imagej orthanc-postgresql orthanc-webviewer orthanc-wsi paml papyrus paraclu parafly parsinsert parsnp pbalign pbbam# pbbarcode pbcopper pbdagcon pbgenomicconsensus pbh5tools pbseqlib pbsim pcalendar perlprimer perm permute pftools phipack phybin phylip phyml physamp phyutility picard-tools piler pirs pixelmed-codec placnet plasmidomics plast plastimatch plink plink1.9 plip poa pondus poretools pp-popularity-contest praat prank predictnls predictprotein primer3 proalign probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pvclust pvrg-jpeg pymia pynast pyqi python3-typed-ast python-avro python-biotools python-burrito python-bz2file python-casmoothing python-clips python-cutadapt python-dendropy python-dictobj python-fitbit python-freecontact python-gffutils python-hl7 python-intervaltree-bio python-matplotlib-venn python-mne python-multipletau python-pbcommand python-pbcore python-pyfaidx python-pyflow python-pymummer python-qcli python-rdflib-jsonld python-ruffus python-screed python-sqlsoup python-xopen qcumber qrisk2 qsopt-ex radiant rambo-k rapmap rate4site raxml ray r-bioc-affy r-bioc-affyio r-bioc-altcdfenvs r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationhub r-bioc-aroma.light r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biomformat r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-deseq2 r-bioc-dnacopy r-bioc-ebseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-go.db r-bioc-graph r-bioc-hilbertvis r-bioc-hypergraph r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-limma r-bioc-makecdfenv r-bioc-mergeomics r-bioc-metagenomeseq r-bioc-multtest r-bioc-phyloseq r-bioc-preprocesscore r-bioc-qvalue r-bioc-rbgl r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors r-bioc-savr r-bioc-shortread r-bioc-snpstats r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-ade4 r-cran-adegenet r-cran-adegraphics r-cran-adephylo r-cran-ape r-cran-assertthat r-cran-backports r-cran-batchjobs r-cran-bbmisc r-cran-bbmle r-cran-beeswarm r-cran-biasedurn r-cran-bio3d r-cran-blockmodeling r-cran-bold r-cran-boolnet r-cran-brew r-cran-cairo r-cran-calibrate r-cran-catools r-cran-checkmate r-cran-cmprsk r-cran-combinat r-cran-crayon r-cran-crul r-cran-curl r-cran-data.table r-cran-dbitest r-cran-deal r-cran-distory r-cran-doparallel r-cran-dosefinding r-cran-dplyr r-cran-ellipse r-cran-epi r-cran-epibasix r-cran-epicalc r-cran-epir r-cran-epitools r-cran-etm r-cran-evaluate r-cran-evd r-cran-fail r-cran-fastmatch r-cran-fields r-cran-filehash r-cran-fitbitscraper r-cran-fitcoach r-cran-futile.options r-cran-future r-cran-g.data r-cran-genabel r-cran-genabel.data r-cran-genetics r-cran-ggplot2 r-cran-globals r-cran-googlevis r-cran-gridbase r-cran-haplo.stats r-cran-hexbin r-cran-htmltools r-cran-htmlwidgets r-cran-httpcode r-cran-httr r-cran-hwriter r-cran-igraph r-cran-irlba r-cran-labeling r-cran-lazyeval r-cran-lexrankr r-cran-listenv r-cran-luminescence r-cran-magrittr r-cran-matrixstats r-cran-medadherence r-cran-memoise r-cran-minpack.lm r-cran-munsell r-cran-natserv r-cran-nmf r-cran-nnls r-cran-openssl r-cran-optparse r-cran-phangorn r-cran-pheatmap r-cran-phylobase r-cran-pkgmaker r-cran-plogr r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-princurve r-cran-progress r-cran-proto r-cran-pscbs r-cran-psy r-cran-qqman r-cran-qtl r-cran-randomforest r-cran-raster r-cran-r.cache r-cran-rcurl r-cran-registry r-cran-rentrez r-cran-reshape r-cran-reshape2 r-cran-rglwidget r-cran-ritis r-cran-rlumshiny r-cran-r.methodss3 r-cran-rncl r-cran-rnexml r-cran-rngtools r-cran-rniftilib r-cran-rocr r-cran-r.oo r-cran-rotl r-cran-rredlist r-cran-rsolnp r-cran-rsqlite r-cran-r.utils r-cran-scales r-cran-scatterd3 r-cran-segmented r-cran-sendmailr r-cran-seqinr r-cran-seroincidence r-cran-shape r-cran-shiny r-cran-shinybs r-cran-snowballc r-cran-solrium r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-surveillance r-cran-taxize r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tikzdevice r-cran-treescape r-cran-triebeard r-cran-truncnorm r-cran-urltools r-cran-vegan r-cran-vioplot r-cran-withr r-cran-worrms r-cran-xml2 rdp-alignment rdp-classifier rdp-readseq readseq reapr relion repeatmasker-recon reprof rnahybrid rna-star roary roguenarok r-other-mott-happy rsem rtax ruby-rgfa runcircos-gui saint salmon samtools samtools-legacy sbmltoolbox scrm scythe seaview seer seqprep seqsero seqtk sga sibsim4 sickle sigma-align sim4 sleepyhead smalt smrtanalysis snap sniffles snpomatic snp-sites soapdenovo soapdenovo2 socket++ sofa-framework sortmerna# spaced spades spdlog sphinxcontrib-autoprogram sprai squizz sra-sdk srf srst2 ssake sspace stacks staden staden-io-lib subread suitename sumaclust sumatra surankco swarm-cluster tantan t-coffee theseus tifffile tigr-glimmer tm-align tnseq-transit tophat toppred transdecoder transtermhp tree-puzzle treeviewx trimmomatic uc-echo varna vcftools velvetoptimiser visionegg volpack vsearch wise xmedcon yaggo zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.