maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 916 packages:
115 (12.6%) packages failed to build reproducibly: odin jellyfish shasta megahit swarm-cluster nitime seqan3 logol ismrmrd# libstatgen spoa axe-demultiplexer sumaclust gdcm nipype raster3d ncbi-vdb delly cassiopee civetweb seqan2 survivor emboss libsbml minia metastudent-data liblemon salmon bustools ctsim pdb2pqr bamtools gatb-core macs autodock-vina sumatra dcmtk gifticlib sambamba klustakwik treeview fasta3 cif-tools bmtk+ exonerate ginkgocadx consensuscore mypy dextractor assembly-stats hmmer libace-perl librostlab brianP nipy nifticlib mapsembler2 centrifuge hts-nim-tools bppsuite libvcflib dicom3tools mosdepth mira xenium vtk-dicom htslib## mrtrix3 cyvcf2 ncbi-entrez-direct iqtree simrisc# bppphyview librostlab-blast libzeep hhsuite artemis ncbi-blast+ insighttoolkit4 elastix libminc phast libatomic-queue libqes libpll libbiod python-coolerP sra-sdk fis-gtm ivar bali-phy gbrowse libcereal mia pydicom hyphy murasaki python-anndata prime-phylo primer3 seqtk opensurgsim maffilter ball mcl freecontact sight simka g2 odil pftools python-cogent lumpy-sv libgclib kissplice
10 (1.1%) packages failed to build from source: pynwb spdlog flash simpleitk conda-package-handling rna-star vg camitk pigx-rnaseq+ macsyfinder
2 (0.2%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: sofa-framework falcon
789 (86.1%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arcp arden argh ariba artfastqgenerator art-nextgen-simulation-tools assemblytics ataqv atropos augur augustus autodocksuite baitfisher bambamc bamclipper bamkit bandage barrnap bart bart-view bbhash bbmap bcalm bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bioawk biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq blasr bolt-lmm bowtie bowtie2 boxshade brig busco bwa camp canu cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conservation-code covtobed crac ctdconverter ctdopts ctn cwlformat cwltool daligner damapper dascrubber dawg dazzdb dcm2niix debian-med deepnano density-fitness dialign dialign-t diamond-aligner dicomnifti dicompyler dicomscope dipy discosnp disulfinder dnaclust dnapi drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass estscan examl fast5 fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flexbar freebayes fsa fsm-lite galileo garli gasic gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gjh-asl-json glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gsort gubbins gwama h5sparse harvest-tools hdmf hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk hunspell-en-med icb-utils idba idseq-bench igdiscover igor igraph iitii imagej indelible infernal insilicoseq intake invesalius ipig iva jaligner jam-lib jebl2 jheatchart jmodeltest kalign kallisto kaptive khmer kineticstools king king-probe kleborate kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align lambda-align2 last-align lastz lefse libamplsolver libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java libmaus2 libmems libmialm libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpdb-redo libpj-java libpsortb libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy mafft mapdamage maq maqview mash maude mauve-aligner mecat2 melting mencal metabat metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps microbiomeutil milib minc-tools mindthegap minimac4 minimap2 mipe mirtop mlv-smile mmseqs2 mothur mptp mrbayes mrc mriconvert mricron multiqc mummer muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-seg ncbi-tools6 neo neobio ngmlr ngs-sdk nifti2dicom nim-hts nim-kexpr nim-lapper njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsuite pcalendar peptidebuilder perlprimer perm phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools pplacer pp-popularity-contest praat prank predictnls presto prinseq-lite proalign probabel probalign probcons proda prodigal profphd proftmb progressivemauve prokka proteinortho prottest pscan-chip pscan-tfbs psignifit psortb psychopy pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pymia pynn# pyode pyqi pyranges pyrle pyscanfcs pysurfer python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-leidenalg python-loompy python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pairix python-parasail python-pauvre python-pbcommand python-pbcore python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pynndescent python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-sinfo python-skbio python-spectra python-sqlsoup python-sqt python-stdlib-list python-streamz python-stubserver python-tinyalign python-treetime python-wdlparse python-wordcloud python-xopen pyxnat q2-alignment q2cli q2-cutadapt q2-dada2 q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-control q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon resfinder rnahybrid roary roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus sepp seqkit seqmagick seqprep seqsero seqtools seriation sga shapeit4 shovill sibelia sibsim4 sickle sigma-align sigviewer sim4 simde skesa skewer smalt smart-open smrtanalysis snakemake snap snap-aligner sniffles snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest spaced spades spaln sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread suitename sumalibs surankco svim sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo umap-learn umis uncalled unicycler unikmer varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt wham-align wise wtdbg2 xdffileio xmedcon yaggo yaha yanagiba yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.