maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 886 packages:
103 (11.6%) packages failed to build reproducibly: nitime primer3 opensurgsim maffilter salmon prime-phylo simka libatomic-queue exonerate gbrowse axe-demultiplexer libqes delly simrisc freecontact cyvcf2 bali-phy ncbi-entrez-direct g2 swarm-cluster sumaclust treeview bustools mypy seqan3 logol metastudent-data sumatra seqtk civetweb jmodeltest hhsuite fasta3 liblemon lumpy-sv hmmer pdb2pqr autodock-vina minia mapsembler2 centrifuge survivor gdcm estscan macs spoa bamtools libcereal consensuscore vtk-dicom cassiopee dcmtk flexbar odil librostlab artemis sambamba ismrmrd# xenium dicom3tools ginkgocadx hts-nim-tools emboss microbiomeutil sra-sdk bppsuite phast shasta pigx-rnaseq ivar iqtree libbiod python-coolerP ncbi-blast+ mosdepth mummer crac gatb-core pydicom libsbml mira ncbi-vdb vg libzeep murasaki librostlab-blast nifticlib libminc mcl ctsim elastix jellyfish kissplice megahit bppphyview ball bowtie2 htslib## libgclib libace-perl sight insighttoolkit4 libpll
30 (3.4%) packages failed to build from source: pplacer pftools q2cli soapaligner kineticstools simpleitk python-streamz profnet simde+ python-pauvre q2-types seqan2+ pynn# gemma rnahybrid python-loompy lambda-align2 dcm2niix berkeley-express pbdagcon librcsb-core-wrapper mrs python-cogent seqan raster3d fis-gtm hdmf conda-package-handling nipy qiime
13 (1.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: camitk q2-cutadapt q2-quality-filter unanimity q2-metadata q2-demux q2-feature-table q2-feature-classifier sofa-framework falcon macsyfinder praat nifti2dicom
740 (83.5%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align ampliconnoise andi anfo aragorn arcp arden argh ariba artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite baitfisher bambamc bamkit bandage barrnap bart bart-view bbhash bbmap bcalm bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosig4c++ biosquid biosyntax bio-tradis bitseq blasr bmtk bolt-lmm bowtie boxshade brig busco bwa camp canu cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conservation-code covtobed ctdconverter ctdopts ctn cwlformat cwltool daligner damapper dascrubber dawg dazzdb debian-med deepnano dextractor dialign dialign-t diamond-aligner dicompyler dicomscope dindel dipy# discosnp disulfinder dnaclust dnapi drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass examl fast5 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash freebayes fsa fsm-lite galileo garli gasic gdpc genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gjh-asl-json glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gubbins gwama gwyddion h5sparse harvest-tools hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk hunspell-en-med hyphy idba idseq-bench igdiscover igor igraph iitii imagej indelible infernal insilicoseq intake invesalius ipig iva jaligner jam-lib jebl2 jellyfish1 jheatchart kalign kallisto kaptive khmer king king-probe kleborate kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align last-align lastz lefse libamplsolver libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java libmaus2 libmems libmialm libmmap-allocator libmmmulti libmurmurhash libmuscle libncl liboptions-java libpal-java libpj-java libpsortb libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libstatgen libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy mafft mapdamage maq maqview mash maude mauve-aligner mecat2 medicalterms melting mencal metabat metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps milib minc-tools mindthegap miniasm minimac4 minimap minimap2 mipe mirtop mlv-smile mmseqs2 mothur mptp mrbayes mrc mriconvert mricron multiqc muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-seg ncbi-tools6 neobio ngmlr ngs-sdk nibabel nim-hts nim-kexpr nim-lapper njplot norsnet norsp nutsqlite obitools opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbseqlib pbsim pbsuite pcalendar perlprimer perm phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools pp-popularity-contest prank predictnls predictprotein presto prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profphd profphd-utils proftmb progressivemauve prokka proteinortho prottest pscan-chip pscan-tfbs psignifit psortb psychopy pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pymia pyode pyqi pyranges pyrle pyscanfcs pysurfer python3-typed-ast python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format# python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pairix# python-parasail python-pbcommand python-pbcore python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-skbio python-spectra python-sqlsoup python-sqt python-tinyalign python-treetime python-wordcloud python-xopen pyxid pyxnat q2templates qcat qcumber qrisk2 qsopt-ex qtltools quicktree quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rna-star roary roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus sepp seqkit seqmagick seqprep seqsero seqtools seriation sga shapeit4 shovill sibelia sibsim4 sickle sigma-align sim4 skesa skewer smalt smart-open smrtanalysis snakemake snap snap-aligner sniffles snpomatic snp-sites soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumalibs surankco svim sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo umap-learn umis unicycler varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt wise wtdbg2 xmedcon yaggo yaha yanagiba yanosim zalign

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.