maint_debian-med package set for unstable/amd64
Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:
- maint_debian-accessibility
- maint_debian-boot
- maint_debian-lua
- maint_debian-med
- maint_debian-ocaml
- maint_debian-on-mobile-maintainers
- maint_debian-python
- maint_debian-qa
- maint_debian-science
- maint_debian-x
- maint_pkg-android-tools-devel
- maint_pkg-erlang-devel
- maint_pkg-fonts-devel
- maint_pkg-games-devel
- maint_pkg-golang-maintainers
- maint_pkg-grass-devel
- maint_pkg-haskell-maintainers
- maint_pkg-java-maintainers
- maint_pkg-javascript-devel
- maint_pkg-multimedia-maintainers
- maint_pkg-perl-maintainers
- maint_pkg-php-pear
- maint_pkg-openstack
- maint_pkg-r
- maint_pkg-ruby-extras-maintainers
- maint_pkg-rust-maintainers
- maint_reproducible-builds
The package set maint_debian-med in
unstable/amd64 consists of 972 packages:
49 (5.0%) packages
failed to build reproducibly:
emboss
hmmer
gbrowse
librostlab
metastudent-data
dcmtk
macsyfinder
porechop
libsbml
consensuscore
treeview
iqtree
dicom3tools
python-pysam
gdcm
mapsembler2
salmon
ball
libpll
seqan2
ncbi-blast+
kleborate
segemehl
parallel
ncbi-igblast
gatb-core
libcifpp
filtlong
pydicom
liblemon
mrtrix3
shapeit4
twopaco
btllib
sight
tree-puzzle#
igraph
bmtk
seqan3
heudiconv
unicycler
fis-gtm
python-biom-format
vg
cwltool
libhmsbeagle
nitime
camitk
dipy
20 (2.1%) packages
failed to build from source:
gmap
biojava6-live
python-loompy
q2-feature-classifier
khmer
acedb
cmtk
mlv-smile
pynn
umap-learn
intake
toil
pixelmed
python-array-api-compat
freebayes
python-cogent
unifrac-tools
anfo
pplacer
libamplsolver
1 (0.1%) packages
are either in depwait state, blacklisted, not for us, or cannot be downloaded:
sambamba
902 (92.8%) packages
successfully build reproducibly:
abacas
abpoa
abyss
adapterremoval
adun.app
aegean
aeonbits-owner
aevol
aghermann
alien-hunter
allelecount
alter-sequence-alignment
altree
amap-align
amide
ampliconnoise
andi
ants
any2fasta
aragorn
arden
argh
argtable2
ariba
artemis
artfastqgenerator
art-nextgen-simulation-tools
assembly-stats
assemblytics
ataqv
atropos
augur
augustus
autodocksuite
autodock-vina
axe-demultiplexer
baitfisher
bali-phy
bambamc
bamclipper
bamkit
bamtools
bandage
barrnap
bart
bart-view
bbhash
bbmap
bcalm
bcftools
beads
beagle
beast2-mcmc
beast-mcmc
bedops
bedtools
berkeley-express
bifrost
bioawk
biobambam2
bio-eagle
biojava4-live
biojava-live
biomaj3
biomaj3-cli
biomaj3-core
biomaj3-daemon
biomaj3-user
biomaj3-zipkin
bioperl
bioperl-run
bio-rainbow
biosig
biosquid
biosyntax
bio-tradis
bio-vcf
bitseq
blasr
bolt-lmm
bowtie
bowtie2
boxshade
bppphyview
bppsuite
brian
brig
busco
bustools
bwa
camp
canu
capsule-maven-nextflow
capsule-nextflow
cassiopee
castxml
cat-bat
cct
cdbfasta
cd-hit
centrifuge
cgview
changeo
charls
chip-seq
chromhmm
chromimpute
ciftilib
cif-tools
circlator
circos
circos-tools
civetweb
clearcut
clonalframe
clonalframeml
clonalorigin
clustalo
clustalw
clustalx
cnvkit
codonw
coils
concavity
conda-package-handling
conda-package-streaming
conservation-code
covtobed
crac
ctdconverter
ctdopts
ctffind
ctn
ctsim
cutesv
cwlformat
cwltest
cycle
cyvcf2
daligner
damapper
dascrubber
dawg
dazzdb
dcm2niix
dcmstack
debian-med
deblur
delly
density-fitness
dextractor
dialign
dialign-t
diamond-aligner
dicomscope
discosnp
disulfinder
dnaclust
dnapi
dnarrange
drmaa
drop-seq
dssp
dwgsim
ea-utils
ecopcr
edfbrowser
edflib
edtsurf
eegdev
eigensoft
elastix
elph
embassy-domainatrix
embassy-domalign
embassy-domsearch
emboss-explorer
e-mem
emmax
emperor
epcr
estscan
examl
exonerate
fast5
fasta3
fastani
fastaq
fastdnaml
fastlink
fastml
fastp
fastqc
fastq-pair
fastqtl
fasttree
fermi-lite
ffindex
figtree
fitgcp
flash
flexbar
flye
freecontact
fsa
fsm-lite
g2
galileo
gasic
gatk-bwamem
gatk-fermilite
gdpc
gemma
genometester
genomethreader
genometools
genomicsdb
gentle
getdata
gfapy
gff2aplot
gff2ps
gffread
ggd-utils
ghmm
gifticlib
gjh-asl-json
glam2
gnumed-client
gnumed-server
grabix
graphlan
grinder
gsort
gubbins
gwama
gwyddion
harmonypy
harvest-tools
hdmf
hhsuite
hilive
hinge
hisat2
hmmer2
hnswlib
hopscotch-map
htscodecs
htseq
htsjdk
htslib
hts-nim-tools
hunspell-en-med
hyphy
icb-utils
idba
idseq-bench
igor
igv
iitii
illustrate
imagej
imbalanced-learn
indelible
infernal
insighttoolkit5
insilicoseq
invesalius
ipig
ismrmrd#
itkadaptivedenoising
itkgenericlabelinterpolator
iva
ivar
jaligner
jam-lib
jebl2
jellyfish
jellyfish1
jheatchart
jmodeltest
kalign
kallisto
kaptive
kineticstools
king
king-probe
kissplice
klustakwik
kma
kmc
kmer
kmerresistance
kraken
kraken2
lagan
lamarc
lamassemble
lambda-align
lambda-align2
last-align
lastz
lefse
libace-perl
libargparse
libargs
libatomicbitvector
libatomic-queue
libbigwig
libbio-alignio-stockholm-perl
libbio-cluster-perl
libbio-coordinate-perl
libbio-das-lite-perl
libbio-db-biofetch-perl
libbio-db-embl-perl
libbio-db-hts-perl
libbio-db-ncbihelper-perl
libbio-db-seqfeature-perl
libbio-featureio-perl
libbio-graphics-perl
libbio-mage-perl
libbio-mage-utils-perl
libbioparser-dev
libbiosoup-dev
libbio-tools-run-remoteblast-perl
libbio-variation-perl
libbitarray
libbpp-core
libbpp-phyl
libbpp-phyl-omics
libbpp-popgen
libbpp-qt
libbpp-raa
libbpp-seq
libbpp-seq-omics
libcereal
libchado-perl
libcolt-free-java
libctapimkt
libdisorder
libdistlib-java
libdivsufsort
libedlib
libfastahack
libflathashmap
libfreecontact-perl
libgclib
libgdf
libgenome
libgenome-model-tools-music-perl
libgenome-perl
libgff
libgkarrays
libgoby-java
libgo-perl
libgtextutils
libgzstream
libhac-java
libhat-trie
libhpptools
libhttp-nio-java
libics
libips4o
libjloda-java
libjung-free-java
libkmlframework-java
libla4j-java
libleidenalg
libmaus2
libmcfp
libmems
libminc
libmjson-java
libmmap-allocator
libmmmulti
libmurmurhash
libmuscle
libncl
libnewuoa
libomp-jonathonl
liboptions-java
libpal-java
libpdb-redo
libpj-java
libpsortb
libqes
librandom123
librcsb-core-wrapper
librdp-taxonomy-tree-java
librg-blast-parser-perl
librg-exception-perl
librg-utils-perl
librostlab-blast
libsecrecy
libseqlib
libshrinkwrap
libsis-base-java
libslow5lib
libsmithwaterman
libsort-key-top-perl
libssw
libstatgen
libstreamvbyte
libtabixpp
libtecla
libtfbs-perl
libthread-pool
libvbz-hdf-plugin
libvcflib
libvistaio
libwfa2
libxdf
libzeep
libzerg
libzerg-perl
lighter
loki
ltrsift
lucy
lumpy-sv
macs
maffilter
mafft
malt
mapdamage
maq
maqview
mash
maude
mauve-aligner
maxflow
mcaller
mcl
mcl14
mecat2
medicalterms
megadepth
megahit
megan-ce
melting
mencal
metabat
metaeuk
metaphlan
metaphlan2-data
metastudent
metastudent-data-2
mhap
mialmpick
microbegps
microbiomeutil
milib
minc-tools
mindthegap
minia
miniasm
minimac4
minimap
minimap2
mipe
mira
mirtop
mmlib
mmseqs2
mosdepth
mothur
mptp
mrbayes
mrc
mricron
multiqc
mummer
murasaki
muscle
muscle3
mustang
nanofilt
nanolyse
nanook
nanopolish
nanostat
nanosv
ncbi-acc-download
ncbi-entrez-direct
ncbi-seg
ncbi-tools6
ncbi-vdb
neo
neobio
ngmlr
nibabel
nifticlib
nim-hts
nim-kexpr
nim-lapper
nipy
nipype
njplot
norsnet
norsp
ntcard
nthash
nutsqlite
obitools
odil
odin
ont-fast5-api
opencfu
openslide
openslide-python
optimir
orthanc
orthanc-dicomweb
orthanc-gdcm
orthanc-imagej
orthanc-mysql
orthanc-neuro
orthanc-postgresql
orthanc-python
orthanc-webviewer
oscar
pairtools
pal2nal
paleomix
paml
papyrus
paraclu
parafly
parallel-fastq-dump
parasail
parsinsert
parsnp
paryfor
patman
patsy
pbbam
pbcopper
pbdagcon
pbseqlib
pbsim
pbsuite
pcalendar
pdb2pqr
peptidebuilder
perlprimer
perm
pftools
phast
phipack
phybin
phylip
phylonium
phyml
physamp
phyutility
phyx
picard-tools
picopore
pigx-rnaseq
piler
pilercr
pilon
pinfish
pique
pirs
pixelmed-codec
pizzly
placnet
plasmidid
plasmidomics
plasmidseeker
plast
plastimatch
plink
plink1.9
plink2
plip
poa
populations
poretools
praat
prank
predictnls
presto
prime-phylo
primer3
prinseq-lite
proalign
probabel
probalign
probcons
proda
prodigal
profbval
profisis
profnet
profphd-utils
proftmb
progressivemauve
prokka
propka
proteinortho
prottest
provean
pscan-chip
pscan-tfbs
psignifit
psortb
psychopy
pullseq
pvrg-jpeg
pybel
pybigwig
pychopper
pycoqc
pycorrfit
pyensembl
pyfastx
pynwb
pyode
pyqi
pyranges
pyscanfcs
pysurfer
python-alignlib
python-anndata
python-awkward
python-bcbio-gff
python-bel-resources
python-bids-validator
python-bioblend
python-bioframe
python-biopython
python-bioregistry
python-biotools
python-bx
python-cgecore
python-cgelib
python-cigar
python-cobra
python-cooler
python-csb
python-curies
python-cutadapt
python-cykhash
python-datacache
python-deeptools
python-deeptoolsintervals
python-dendropy
python-dicompylercore
python-dnaio
python-epimodels
python-ete3
python-etelemetry
python-fitbit
python-freecontact
python-geneimpacts
python-gffutils
python-gtfparse
python-hl7
python-hmmlearn
python-intervaltree-bio
python-iow
python-leidenalg
python-mne
python-nanoget
python-nanomath
python-pairix
python-pangolearn
python-parasail
python-pauvre
python-pbcommand
python-pbcore+#
python-prefixed
python-py2bit
python-pyani
python-pybedtools
python-pycosat
python-pyfaidx
python-pymummer
python-pyspoa
python-pyvcf
python-questplus
python-ruffus
python-scitrack
python-screed
python-skbio
python-sqt
python-tinyalign
python-treetime
python-trx-python
python-wdlparse
pyxid
pyxnat
q2-alignment
q2cli
q2-cutadapt
q2-dada2
q2-demux
q2-diversity-lib
q2-emperor
q2-feature-table
q2-fragment-insertion
q2-metadata
q2-phylogeny
q2-quality-control
q2-quality-filter
q2-sample-classifier
q2-taxa
q2templates
q2-types
qcat
qcumber
qiime
qrisk2
qsopt-ex
qtltools
quicktree
quitcount
quorum
racon
radiant
ragout
rambo-k
rampler
rapmap
raster3d
rate4site
raxml
ray
rdp-alignment
rdp-classifier
rdp-readseq
readerwriterqueue
readseq
readucks
reapr
recan
relacy
relion
repeatmasker-recon
reprof
resfinder
resfinder-db
rnahybrid
rna-star
roary
rockhopper
roguenarok
routine-update
rsem
rtax
ruby-rgfa
runcircos-gui
saint
salmid
samblaster
samclip
samtools
samtools-legacy
savvy
sbmltoolbox
scoary
scrappie
scrm
scythe
seaview
seer
seirsplus
sepp
seqan-needle
seqan-raptor
seqkit
seqmagick
seqprep
seqsero
seqtk
seqtools
seriation
setcover
sga
shasta
shovill
sibelia
sibsim4
sickle
sigma-align
sigviewer
sim4
simde
simka
simrisc
ska
skesa
skewer
smalt
smrtanalysis
snakemake
snap
snap-aligner
sniffles
snippy
snpeff
snpomatic
snpsift
snp-sites
soapaligner
soapdenovo
soapdenovo2
soapsnp
socket++
sorted-nearest
sortmerna
spaced
spades
spaln
spdlog
spoa
sprai
spread-phy
sra-sdk
srf
srst2
ssake
sspace
ssshtest
stacks
staden
staden-io-lib
stringtie
subarch-select
subread
suitename
sumaclust
sumalibs
sumatra
surankco
surpyvor
survivor
svim
swarm-cluster
sweed
swissknife
tantan
tao-config
tao-json
t-coffee
terraphast
theseus
thesias
tiddit
tigr-glimmer
tipp
tm-align
tnseq-transit
tombo
toml11
tophat-recondition
toppred
tortoize
trace2dbest
tracetuner
transdecoder
transrate-tools
transtermhp
treeviewx
trf
trim-galore
trimmomatic
trinculo
trinityrnaseq
tvc
uc-echo
ugene
umis
uncalled
unifrac
unikmer
varna
vcfanno
vcftools
velvet
velvetoptimiser
veryfasttree
virulencefinder
vmatch
volpack
vsearch
vt
vtk-dicom
wham-align
wise
wtdbg2
xdffileio
xenium
xmedcon
xpore
xxsds-dynamic
yaggo
yaha
yanagiba
yanosim
A package name displayed with a bold
font is an indication that this package has a note. Visited
packages are linked in green, those which have not been visited are
linked in blue.
A #
sign after the name of a package
indicates that a bug is filed against it. Likewise, a
+
sign indicates there is a
patch available, a P
means a
pending bug while #
indicates a
closed bug. In cases of several bugs, the symbol is repeated.