maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 980 packages:
44 (4.5%) packages failed to build reproducibly: python-cogent fis-gtm dcmtk seqan2 igraph bmtk camitk heudiconv gbrowse librostlab hmmer emboss metastudent-data macsyfinder libsbml treeview consensuscore iqtree gdcm dicom3tools python-pysam htsjdk mapsembler2 libpll ball unicycler segemehl biojava6-live parallel ncbi-igblast gatb-core filtlong pydicom seqan3 liblemon biojava-live shapeit4 twopaco btllib cwltool dipy nitime jebl2 ncbi-blast+
66 (6.7%) packages failed to build from source: q2cli gmap pychopper tnseq-transit q2-feature-classifier seqmagick nanopolish cmtk snakemake acedb ncbi-seg mlv-smile pynn nipype picard-tools umap-learn intake ncbi-acc-download igdiscover pigx-rnaseq vg rna-star toil libace-perl maq minimac4 maqview libstatgen hts-nim-tools bali-phy libbpp-seq-omics libpsortb mia dwgsim mosdepth libbpp-seq biosig mindthegap libsis-jhdf5-java libcereal libncl anfo python-pairix soapdenovo2 volpack velvet nipy wise prime-phylo sumaclust salmon parasail rapmap thesias ntcard tree-puzzle sumalibs phast savvy seqan-raptor unifrac sight seqan-needle q2-quality-control unifrac-tools freebayes
2 (0.2%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: libgenome-model-tools-music-perl python-array-api-compat
868 (88.6%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk biobambam2 bio-eagle biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bio-vcf bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brian brig busco bustools bwa camp canu capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circlator circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack debian-med deblur delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drmaa drop-seq dssp ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr epigrass estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo garli gasic gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools genomicsdb gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba idseq-bench igor igv iitii illustrate imagej imbalanced-learn indelible infernal insighttoolkit5 insilicoseq invesalius ipig ismrmrd# iva ivar jaligner jam-lib jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive khmer kineticstools king king-probe kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-perl libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage mash maude mauve-aligner mcaller mcl mcl14 mecat2 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib minc-tools minia miniasm minimap minimap2 mipe mira mirtop mmlib mmseqs2 mothur mptp mrbayes mrc mricron mrtrix3 multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanostat nanosv ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nim-hts nim-kexpr nim-lapper njplot norsnet norsp nthash nutsqlite nxtrim obitools odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools pplacer praat prank predictnls presto primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit psortb psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pymia pynwb pyode pyqi pyranges pyscanfcs pysurfer python-alignlib python-anndata python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-cooler python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-loompy python-mne python-nanoget python-nanomath python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2-alignment q2-cutadapt q2-dada2 q2-demux q2-diversity-lib q2-emperor q2-feature-table q2-fragment-insertion q2-metadata q2-phylogeny q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid roary rockhopper roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus sepp seqkit seqprep seqsero seqtk seqtools seriation setcover sga shasta shovill sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt smrtanalysis snap snap-aligner sniffles snippy snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog spoa sprai spread-phy squizz sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast theseus tiddit tigr-glimmer tipp tm-align tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo ugene umis uncalled unikmer varna vcfanno vcftools velvetoptimiser veryfasttree virulencefinder vmatch vsearch vt vtk-dicom wham-align wtdbg2 xdffileio xenium xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.