maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 779 packages:
88 (11.3%) packages failed to build reproducibly: ball libpll elastix ctsim sight prime-phylo salmon simka insighttoolkit4 nitime maffilter centrifuge gdcm primer3 delly ginkgocadx exonerate gbrowse vg freecontact bustools g2 swarm-cluster murasaki sumaclust libqes treeview htslib## libace-perl ivar consensuscore sumatra fasta3 logol metastudent-data odil hhsuite seqtk jmodeltest liblemon artemis ncbi-blast+ hmmer pdb2pqr phast minia python-cogent estscan spoa megahit bppphyview macs camitk autodock-vina bamtools libcereal vtk-dicom cassiopee dcmtk flexbar librostlab hyphy ismrmrd# bali-phy dicom3tools ncbi-entrez-direct libundead libzeep axe-demultiplexer libbiod python-cooler+ libgclib bppsuite emboss microbiomeutil sra-sdk iqtree pydicom bowtie2 mummer crac gatb-core ncbi-vdb mcl seqan3 mira libsbml cyvcf2
42 (5.4%) packages failed to build from source: xenium recan biomaj3-download biomaj3-user optimir biomaj3-process biomaj3-daemon python-cgecore pftools q2cli python-biom-format soapaligner simpleitk profnet relion soapdenovo2 xmedcon simde python-streamz unanimity opencfu conda-package-handling librcsb-core-wrapper pynn# gemma kleborate yanagiba qiime kissplice rnahybrid gubbins seqan infernal intake fis-gtm opensurgsim raster3d mapsembler2 soapdenovo fastlink seqan2 trinityrnaseq
12 (1.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: pbdagcon falcon ghmm q2-cutadapt q2-types q2-quality-filter q2-feature-table blasr iitii q2-demux q2-feature-classifier hunspell-en-med
637 (81.8%) packages successfully build reproducibly: abacas abyss adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align ampliconnoise andi anfo aragorn arcp arden ariba artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite baitfisher bambamc bamkit bandage barrnap bart bart-view bbhash bbmap bcalm bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig4c++ biosquid bitseq bolt-lmm bowtie boxshade brig bwa camp canu cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conservation-code covtobed ctdconverter ctdopts cwlformat cwltool daligner dascrubber dazzdb dcm2niix debian-med deepnano dextractor dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dnapi drmaa drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass examl fast5 fastaq fastdnaml fastp fastqc fasttree fermi-lite ffindex figtree filtlong fitgcp flash fsa fsm-lite galileo gasic gdpc genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread glam2 gmap grabix graphlan grinder gwama gwyddion harvest-tools hdmf hilive hinge hisat2 hmmer2 htscodecs htseq htsjdk idba idseq-bench igdiscover igor igraph imagej indelible insilicoseq invesalius ipig jaligner jam-lib jellyfish1 jheatchart kalign kallisto kaptive khmer kineticstools king king-probe kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align lambda-align2 last-align lastz lefse libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbpp-phyl-omics libbpp-qt libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdeflate libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java libmaus2 libmems libmialm libmmap-allocator libmurmurhash libmuscle libncl liboptions-java libpal-java libpsortb librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libseqlib libsis-base-java libsis-jhdf5-java libsort-key-top-perl libssw libstatgen libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy mafft maqview mash mauve-aligner melting metabat metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps milib minc-tools mindthegap miniasm minimac4 minimap minimap2 mipe mirtop mlv-smile mmseqs2 mothur mrbayes mrs multiqc muscle mustang nanofilt nanook nanosv ncbi-acc-download ncbi-seg ncbi-tools6 neobio ngmlr ngs-sdk nibabel nifti2dicom njplot norsp nutsqlite obitools openslide-python orthanc-dicomweb orthanc-imagej orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbseqlib pbsim pbsuite pcalendar perlprimer perm phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pirs pixelmed pixelmed-codec# placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools pplacer pp-popularity-contest prank predictnls predictprotein presto prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profphd profphd-utils proftmb prokka proteinortho prottest pscan-tfbs psortb psychopy pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pymia pyode pyqi pyrle pyscanfcs python3-typed-ast python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biopython python-bx python-bz2file python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-loompy python-matplotlib-venn python-mne python-multipletau python-multisplitby python-mypy-extensions python-nanoget python-nanomath python-ncls python-parasail python-pauvre python-pbcommand python-pbcore python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-scitrack python-screed python-skbio python-spectra python-sqlsoup python-sqt python-tinyalign python-treetime python-wordcloud pyxid pyxnat q2-metadata q2templates qcat qrisk2 qsopt-ex qtltools+ quicktree quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr relacy reprof resfinder resfinder-db rna-star roary roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm seer segemehl seirsplus seqmagick seqprep seqsero seqtools sga shapeit4 shovill sibelia sibsim4 sickle sigma-align sim4 skesa skewer smalt smart-open smrtanalysis snakemake snap snap-aligner sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spades spaln spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumalibs surankco sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred trace2dbest transdecoder transrate-tools transtermhp tree-puzzle trf trim-galore trimmomatic trinculo tvc uc-echo umap-learn umis unicycler varna vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt wise wtdbg2 yaha yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.