maint_debian-med package set for unstable/amd64

• All tracked package sets for unstable/amd64

The package set maint_debian-med in unstable/amd64 consists of 685 packages:
89 (13.0%) packages failed to build reproducibly: elastix fis-gtm golang-github-dataence-porter2 ncbi-entrez-direct insighttoolkit4 ncbi-blast+ clustalo fw4spl toil+ bamtools primer3 bedops trinityrnaseq flexbar pdb2pqr prime-phylo murasaki bppphyview crac sitplus gdcm soapdenovo libqes treeview dicom3tools emboss mummer bppsuite maffilter liblemon exonerate mira python-ruffus jmodeltest estscan librostlab ismrmrd# iqtree snakemake lambda-align phast camitk sra-sdk macsyfinder centrifuge libcereal cassiopee libace-perl seqtk g2 delly sleepyhead opensurgsim consensuscore pixelmed htslib## microbiomeutil metastudent-data python-csb fastx-toolkit ginkgocadx mapsembler2 python-cogent autodock-vina vtk-dicom raster3d spoa elph odil freebayes libundead ball libsbml loki ctsim freecontact python-biopython libminc mia librostlab-blast logol libpll bowtie2 simpleitk axe-demultiplexer grabix ncbi-vdb jellyfish dcmtk
13 (1.9%) packages failed to build from source: artemis paleomix gbrowse libmurmurhash libncl libbiod seqan libbio-graphics-perl seqan2 falcon gatb-core pbcopper picard-tools
1 (0.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: sambamba
582 (85.0%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden ariba artfastqgenerator art-nextgen-simulation-tools assemblytics augustus autodocksuite baitfisher bali-phy bambamc bandage barrnap bart bart-view bcbio bcftools### beads beagle beast2-mcmc beast-mcmc bedtools berkeley-express biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bitseq blasr bolt-lmm bowtie boxshade brig bwa cain camp canu cct cdbfasta cd-hit cfflib cgview changeo charls chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalw clustalx cnvkit codonw coils concavity conservation-code ctdconverter ctdopts ctn cwltool cycle cyvcf2 daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem epcr epigrass examl fast5 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree fitgcp freemedforms-project fsa fsm-lite galileo garli gasic gdpc gemma genometester genometools gentle getdata gfapy gff2aplot gff2ps ghmm# giira glam2 gnumed-client gnumed-server graphlan grinder gubbins gwama gwyddion harvest-tools hhsuite hilive hinge hisat2 hmmer hmmer2 htseq htsjdk hunspell-en-med hyphy idba igor igraph imagej imagevis3d indelible infernal invesalius ipig iva jaligner jam-lib jebl2 jellyfish1 jheatchart kalign khmer kineticstools king king-probe kissplice kmc kmer kraken lagan lamarc lambda-align2# last-align lefse libbio-coordinate-perl libbio-das-lite-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libmems libmialm libmuscle liboptions-java libpal-java libpsortb libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libseqlib libsis-base-java libsis-jhdf5-java## libsmithwaterman libsort-key-top-perl libssw libstatgen libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzeep libzerg libzerg-perl libzstd ltrsift lucy macs mafft mapdamage maq maqview mash maude mauve-aligner maxflow mcl medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps milib minc-tools minia miniasm minimac4 minimap minimap2 mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mothur mptp mrbayes mriconvert mrs muscle mustang mypy nanook nanopolish ncbi-seg ncbi-tools6 neobio ngs-sdk# njplot norsnet norsp nutsqlite obitools opencfu openslide openslide-python orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-webviewer orthanc-wsi pal2nal paml papyrus paraclu parafly parsinsert parsnp patman pbalign pbbam# pbbarcode pbdagcon pbgenomicconsensus pbh5tools pbseqlib pbsim pbsuite pcalendar perlprimer perm pftools phipack phybin phylip phyml physamp phyutility phyx piler pilon pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 plip poa pondus populations porechop poretools pp-popularity-contest praat prank predictnls predictprotein proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve prokka proteinortho prottest pscan-chip pscan-tfbs psortb pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-biom-format python-biotools python-burrito python-bx python-bz2file python-clips python-cobra python-colormap python-colormath python-cutadapt python-dendropy python-depinfo python-easydev python-fitbit python-freecontact python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-mypy-extensions python-pbcommand python-pbcore python-pipdeptree python-pybedtools python-pyfaidx python-pyflow python-pymummer python-pysam python-pyvcf python-qcli python-rdflib-jsonld python-schema-salad python-screed python-skbio python-spectra python-sqlsoup python-sqt python-treetime python-xopen qcumber qiime qrisk2 qsopt-ex qtltools quorum racon radiant rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr relion repeatmasker-recon reprof rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid salmon samblaster samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer segemehl seqmagick seqprep seqsero seqtools sga sibsim4 sickle sigma-align sim4 smalr smalt smrtanalysis snap snap-aligner# sniffles snpomatic snp-sites soapaligner soapdenovo2 soapsnp socket++ sofa-framework sortmerna spaced spades spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib subread suitename sumaclust sumatra surankco swarm-cluster sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align tnseq-transit tophat toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic tvc uc-echo unanimity unicycler varna vcftools velvet velvetoptimiser volpack vsearch wise xmedcon yaggo yaha zalign

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.