Debian navigation

maint_debian-med package set for unstable/amd64

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in unstable/amd64
The package set maint_debian-med in unstable/amd64 consists of 713 packages:
None 82 (11.5%) packages failed to build reproducibly: bppphyview ctsim trinityrnaseq spoa murasaki cyvcf2 flexbar emboss python-skbio exonerate camitk libqes treeview vtk-dicom mummer bppsuite maffilter mira jmodeltest cassiopee ismrmrd# phast g2 libace-perl sra-sdk libgclib seqtk libcereal ncbi-blast+ dicom3tools gdcm microbiomeutil metastudent-data fastx-toolkit soapdenovo estscan librostlab delly bedtools mapsembler2 consensuscore odil htslib## macsyfinder autodock-vina ball freecontact bowtie2 libsbml librostlab-blast loki minia crac python-biopython hmmer sleepyhead dcmtk libzeep raster3d insighttoolkit4 iqtree lambda-align plip oscar fis-gtm centrifuge simpleitk axe-demultiplexer libminc tm-align golang-github-dataence-porter2 ncbi-vdb libpll mia grabix bamtools clustalo norsnet+ pdb2pqr primer3 prime-phylo gatb-core
None 35 (4.9%) packages failed to build from source: unanimity libics racon biobambam2 aghermann python-easydev python-pbcore pbgenomicconsensus sga staden-io-lib obitools libgtextutils seqan libstatgen gbrowse salmon liblemon logol freebayes falcon seqan2 libbio-graphics-perl opensurgsim ncbi-entrez-direct libbiod samtools-legacy artemis orthanc-dicomweb elastix ginkgocadx jellyfish picard-tools paleomix fw4spl libundead
None None None None 3 (0.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: beads sambamba mmseqs2
None 593 (83.2%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden ariba artfastqgenerator art-nextgen-simulation-tools assemblytics atropos augustus autodocksuite baitfisher bali-phy bambamc bandage barrnap bart bart-view bbmap bcbio bcftools### beagle beast2-mcmc beast-mcmc bedops berkeley-express biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bitseq blasr bolt-lmm bowtie boxshade brig bwa cain camp canu cct cdbfasta cd-hit cfflib cgview changeo charls chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalw clustalx cnvkit codonw coils concavity conservation-code ctdconverter ctdopts ctn cwltool cycle daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elph# embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax epcr epigrass examl fast5 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree fitgcp freemedforms-project fsa fsm-lite galileo garli gasic gdpc gemma genometester genometools gentle getdata gfapy gff2aplot gff2ps gffread ghmm giira glam2 gnumed-client gnumed-server graphlan grinder gubbins gwama gwyddion harvest-tools hhsuite hilive hinge hisat2 hmmer2 htseq htsjdk hunspell-en-med hyphy idba igdiscover igor igraph imagej indelible infernal invesalius ipig iva jaligner jam-lib jebl2 jellyfish1 jheatchart kalign kallisto kaptive khmer kineticstools king king-probe kissplice kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align2 last-align lefse libbio-coordinate-perl libbio-das-lite-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libmaus2 libmems libmialm libmurmurhash libmuscle libncl liboptions-java libpal-java libpsortb libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libseqlib libsis-base-java libsis-jhdf5-java## libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd ltrsift lucy macs mafft mapdamage maq maqview mash maude mauve-aligner maxflow mcl medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps milib minc-tools miniasm minimac4 minimap minimap2 mipe mirtop mlv-smile mobyle mobyle-programs mobyle-tutorials mothur mptp mrbayes mriconvert mrs muscle mustang mypy nanook nanopolish ncbi-seg ncbi-tools6 neobio ngs-sdkP njplot norsp nutsqlite opencfu openslide openslide-python optimir orthanc orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-webviewer orthanc-wsi pal2nal paml papyrus paraclu parafly parsinsert parsnp patman pbalign pbbam# pbbarcode pbcopper pbdagcon pbh5tools pbseqlib pbsim pbsuite pcalendar perlprimer perm pftools phipack phybin phylip phyml physamp phyutility phyx piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 poa populations porechop poretools pp-popularity-contest praat prank predictnls predictprotein proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve prokka proteinortho prottest pscan-chip pscan-tfbs psortb pvrg-jpeg pybigwig pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-bids-validator python-biom-format python-biotools python-bx python-bz2file python-cgecore python-cobra python-cogent python-colormap python-colormath python-csb python-cutadapt python-dendropy python-depinfo python-dnaio python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-mypy-extensions python-pbcommand python-pipdeptree python-py2bit python-pybedtools python-pyfaidx python-pyflow python-pymummer python-pysam python-pyvcf python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-spectra python-sqlsoup python-sqt python-treetime python-xopen q2cli q2-cutadapt q2-types qcumber qiime qrisk2 qsopt-ex qtltools quorum radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr relion repeatmasker-recon reprof rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid samblaster samtools sbmltoolbox scoary scrm scythe seaview seer segemehl seqmagick seqprep seqsero seqtools shapeit4 sibsim4 sickle sigma-align sim4 skesa smalr smalt smrtanalysis snakemake snap snap-aligner# sniffles snpomatic snp-sites soapaligner soapdenovo2 soapsnp socket++ sofa-framework sortmerna spaced spades spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf srst2 ssake sspace stacks staden stringtie subread suitename sumaclust sumatra surankco swarm-cluster sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tnseq-transit toil tophat toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trim-galore trimmomatic tvc uc-echo umis unicycler varna vcftools velvet velvetoptimiser virulencefinder volpack vsearch wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.