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maint_debian-med package set for bookworm/armhf

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package set maint_debian-med in bookworm/armhf
The package set maint_debian-med in bookworm/armhf consists of 870 packages:
None 31 (3.6%) packages failed to build reproducibly: librostlab libamplsolver logol segemehl parallel bali-phy htslib minimap2 python-cogent nipy shapeit4 cif-tools mira macs python-pairix+ libzeep nipype treeview mia tree-puzzle python-anndata hhsuite gbrowse filtlong libsbml dicom3tools metastudent-data emboss centrifuge gdcm xpore
None 38 (4.4%) packages failed to build from source: python-parasail umap-learn resfinder-db python-pbcore ismrmrd# spades gatb-core pychopper libmaus2 pyranges gjh-asl-json libbiod acedb eegdev picard-tools ball intake ivar bbhash canu snakemake quorum nitime mypy epigrass python-streamz bustools orthanc-wsi ncbi-blast+ nim-hts htsjdk illustrate bedops python-easydev rapmap seqan3 python-skbio pydicom
None None None None 57 (6.6%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 kissplice soapdenovo libstatgen insighttoolkit4 python-pynndescent swarm-cluster bmtk rna-star mapsembler2 gdpc vsearch prokka megahit khmer mrtrix3 pbcopper elastix simka bowtie2 metabat sortmerna relion infernal bio-eagle lambda-align2 pftools bowtie artemis obitools mecat2 xenium snap-aligner hmmer python-loompy soapaligner macsyfinder bolt-lmm ncbi-vdb sra-sdk odil vg fis-gtm soapdenovo2 diamond-aligner kma salmon iqtree circlator mmseqs2 cnvkit mash blasr shovill pbseqlib sspace shasta
None 744 (85.5%) packages successfully build reproducibly: abacas abyss adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arcp arden argh artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools### beads beagle beast2-mcmc beast-mcmc bedtools berkeley-express bioawk biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig busco bwa camp capsule-maven-nextflow capsule-nextflow cassiopee cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conservation-code covtobed crac ctdconverter ctdopts ctn ctsim cwlformat cwltool cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly density-fitness dextractor dialign dialign-t dicomnifti dicomscope dipy disulfinder dnaclust dnapi drop-seq dssp dwgsim ecopcr edfbrowser edflib edtsurf eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freebayes freecontact fsa g2 galileo garli gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gsort gwama gwyddion h5sparse harvest-tools hdmf hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igdiscover igor igraph iitii imagej indelible indexed-gzip insilicoseq invesalius ipig jaligner jam-lib jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king-probe klustakwik kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align last-align lastz lefse libace-perl libargs libatomicbitvector libbigwig libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java liblemon libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpdb-redo libpj-java libpll libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy lumpy-sv maffilter mafft mapdamage maq maqview maude mauve-aligner mcl medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps microbiomeutil milib minc-tools miniasm minimap mipe mirtop mlv-smile mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr ngs-sdk nibabel nifticlib nim-kexpr nim-lapper njplot norsnet norsp ntcard nthash nutsqlite nxtrim odin ont-fast5-api opencfu openslide openslide-python opensurgsim optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml phyutility phyx picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidomics plast plink plink1.9 plink2 plip poa populations porechop poretools pp-popularity-contest praat prank presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prottest pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pymia pyode pyqi pyrle pyscanfcs pysurfer python-alignlib python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-cigar python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hdmedians python-hl7 python-intervaltree-bio python-leidenalg python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pauvre python-pbcommand python-pipdeptree python-py2bit python-pyani python-pybedtools+ python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyspoa python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-sinfo python-spectra python-sqlsoup python-stdlib-list python-stubserver python-tinyalign python-treetime python-typechecks python-upsetplot python-wdlparse python-wordcloud python-xopen pyxid pyxnat q2cli q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant rambo-k raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc skewer smalt smart-open snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco survivor svim sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vt vtk-dicom wham-align wise wtdbg2 xdffileio xmedcon yaggo yaha yanagiba yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.