maint_debian-med package set for bookworm/armhf
Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:
- maint_debian-accessibility
- maint_debian-boot
- maint_debian-lua
- maint_debian-med
- maint_debian-ocaml
- maint_debian-on-mobile-maintainers
- maint_debian-python
- maint_debian-qa
- maint_debian-science
- maint_debian-x
- maint_pkg-android-tools-devel
- maint_pkg-erlang-devel
- maint_pkg-fonts-devel
- maint_pkg-games-devel
- maint_pkg-golang-maintainers
- maint_pkg-grass-devel
- maint_pkg-haskell-maintainers
- maint_pkg-java-maintainers
- maint_pkg-javascript-devel
- maint_pkg-multimedia-maintainers
- maint_pkg-perl-maintainers
- maint_pkg-php-pear
- maint_pkg-openstack
- maint_pkg-r
- maint_pkg-ruby-extras-maintainers
- maint_pkg-rust-maintainers
- maint_reproducible-builds
The package set maint_debian-med in
bookworm/armhf consists of 959 packages:
24 (2.5%) packages
failed to build reproducibly:
segemehl
biojava-live
dicom3tools
librostlab
treeview
liblemon
twopaco
gbrowse
logol
mira
jebl2
libamplsolver
filtlong
shapeit4
emboss
nipy
parallel
biojava5-live
igraph
metastudent-data
porechop
pixelmed
ncbi-blast+
mia
36 (3.8%) packages
failed to build from source:
bbhash
pyranges
python-pbcore+#
libbioparser-dev
abpoa
ismrmrd#
bali-phy
simde
pychopper
biojava6-live
nim-hts
spades
pyfastx
python-parasail
gjh-asl-json
flye
libmaus2
q2-fragment-insertion
dipy
libthread-pool
seqan-raptor
conda-package-streaming
milib
ivar
ball
quorum
pydicom
bustools
rapmap
seqan-needle
ncbi-igblast
nitime
sambamba
seqan3
btllib
xmedcon
148 (15.4%) packages
are either in depwait state, blacklisted, not for us, or cannot be downloaded:
shasta
python-cooler
mapsembler2
obitools
soapdenovo
ntcard
pftools
gdpc
prokka
bmtk
python-skbio
fis-gtm
elastix
insighttoolkit5
kallisto
salmon
minia
simka
iqtree
infernal
bcalm
mindthegap
discosnp
bowtie
bio-eagle
vsearch
libstatgen
khmer
lambda-align2
sortmerna
megahit
metabat
consensuscore
diamond-aligner
macsyfinder
probabel
mrtrix3
mecat2
ncbi-vdb
rna-star
bowtie2
kissplice
hmmer
pbcopper
theseus
soapaligner
mash
bolt-lmm
kma
swarm-cluster
gdcm
mmseqs2
snap-aligner
insighttoolkit4
jellyfish1
python-loompy
circlator
q2-phylogeny
soapdenovo2
cnvkit
abyss
xenium
gatb-core
spaln
wtdbg2
sra-sdk
seqan2
python-cogent
python-ete3
beast2-mcmc
megan-ce
minimac4
parallel-fastq-dump
heudiconv
pigx-rnaseq
pbseqlib
umap-learn
snpeff
metaphlan
unifrac
emperor
paleomix
q2-demux
q2-alignment
q2-metadata
q2-cutadapt
ariba
q2-quality-filter
q2-types
q2-quality-control
q2-diversity-lib
q2-feature-classifier
q2-emperor
q2-taxa
q2-feature-table
htsjdk
gasic
gubbins
smrtanalysis
genomicsdb
seqsero
plastimatch
fsm-lite
rsem
busco
sspace
pbdagcon
psortb
resfinder-db
srst2
libmmmulti
libatomic-queue
sight
kleborate
pizzly
barrnap
kmerresistance
pilon
artemis
cat-bat
fastqc
surankco
drop-seq
proteinortho
picard-tools
libgoby-java
pbbam
racon
king
blasr
shovill
libjloda-java
biobambam2
unicycler
augur
beagle
nthash
rockhopper
malt
igv
python-iow
skesa
qcumber
snpsift
kraken
plasmidid
chromhmm
q2-dada2
751 (78.3%) packages
successfully build reproducibly:
abacas
acedb
adapterremoval
adun.app
aegean
aeonbits-owner
aeskulap
aevol
aghermann
alien-hunter
allelecount
alter-sequence-alignment
altree
amap-align
amide
ampliconnoise
andi
any2fasta
aragorn
arden
argh
artfastqgenerator
art-nextgen-simulation-tools
assembly-stats
assemblytics
ataqv
atropos
augustus
autodocksuite
autodock-vina
axe-demultiplexer
baitfisher
bambamc
bamclipper
bamkit
bamtools
bandage
bart
bart-view
bbmap
bcftools
beads
beast-mcmc
bedops
bedtools
berkeley-express
bioawk
biococoa
biojava4-live
biomaj3
biomaj3-cli
biomaj3-core
biomaj3-daemon
biomaj3-download
biomaj3-process
biomaj3-user
biomaj3-zipkin
bioperl
bioperl-run
bio-rainbow
biosig
biosquid
biosyntax
bio-tradis
bio-vcf
bitseq
boxshade
bppphyview
bppsuite
brian
brig
bwa
camp
canu
capsule-maven-nextflow
capsule-nextflow
cassiopee
castxml
cct
cdbfasta
cd-hit
centrifuge
cgview
changeo
charls
chip-seq
chromimpute
ciftilib
cif-tools
circos
circos-tools
civetweb
clearcut
clonalframe
clonalframeml
clonalorigin
clustalo
clustalw
clustalx
cmtk
codonw
coils
concavity
concurrentqueue
conda-package-handling
conservation-code
covtobed
crac
ctdconverter
ctdopts
ctn
ctsim
cutesv
cwlformat
cwltool
cycle
cyvcf2
daligner
damapper
dascrubber
dawg
dazzdb
dcm2niix
dcmstack
dcmtk
debian-med
delly
density-fitness
dextractor
dialign
dialign-t
dicomnifti
dicomscope
disulfinder
dnaclust
dnapi
dnarrange
drmaa
dssp
dwgsim
ea-utils
ecopcr
edfbrowser
edflib
edtsurf
eegdev
eigensoft
elph
embassy-domainatrix
embassy-domalign
embassy-domsearch
emboss-explorer
e-mem
emmax
epcr
estscan
examl
exonerate
fast5
fasta3
fastani
fastaq
fastdnaml
fastlink
fastml
fastp
fastq-pair
fastqtl
fasttree
fermi-lite
ffindex
figtree
fitgcp
flash
flexbar
freebayes
freecontact
fsa
g2
galileo
garli
gatk-bwamem
gatk-fermilite
gemma
genometester
genomethreader
genometools
gentle
getdata
gfapy
gff2aplot
gff2ps
gffread
ggd-utils
ghmm
gifticlib
glam2
gmap
gnumed-client
gnumed-server
grabix
graphlan
grinder
gsort
gwama
gwyddion
harmonypy
harvest-tools
hdmf
hhsuite
hilive
hinge
hisat2
hmmer2
hnswlib
hopscotch-map
htscodecs
htseq
htslib
hts-nim-tools
hunspell-en-med
hyphy
icb-utils
idba
idseq-bench
igor
iitii
illustrate
imagej
imbalanced-learn
indelible
insilicoseq
intake
invesalius
ipig
iva
jaligner
jam-lib
jellyfish
jheatchart
jmodeltest
kalign
kaptive
kineticstools
king-probe
klustakwik
kmc
kmer
kraken2
lagan
lamarc
lamassemble
lambda-align
last-align
lastz
lefse
libace-perl
libargs
libatomicbitvector
libbigwig
libbio-alignio-stockholm-perl
libbio-cluster-perl
libbio-coordinate-perl
libbio-das-lite-perl
libbio-db-biofetch-perl
libbio-db-embl-perl
libbio-db-hts-perl
libbio-db-ncbihelper-perl
libbio-db-seqfeature-perl
libbio-featureio-perl
libbio-graphics-perl
libbio-mage-perl
libbio-mage-utils-perl
libbiosoup-dev
libbio-tools-run-remoteblast-perl
libbio-variation-perl
libbitarray
libbpp-core
libbpp-phyl
libbpp-phyl-omics
libbpp-popgen
libbpp-qt
libbpp-raa
libbpp-seq
libbpp-seq-omics
libcereal
libchado-perl
libcifpp
libcolt-free-java
libctapimkt
libdeflate
libdisorder
libdistlib-java
libdivsufsort
libedlib
libfastahack
libflathashmap
libfreecontact-perl
libgclib
libgdf
libgenome
libgenome-model-tools-music-perl
libgenome-perl
libgff
libgkarrays
libgo-perl
libgtextutils
libgzstream
libhac-java
libhat-trie
libhmsbeagle
libhpptools
libhttp-nio-java
libics
libips4o
libjung-free-java
libkmlframework-java
libla4j-java
libmcfp
libmems
libmialm
libminc
libmjson-java
libmmap-allocator
libmurmurhash
libmuscle
libncl
libnewuoa
libomp-jonathonl
liboptions-java
libpal-java
libpdb-redo
libpj-java
libpll
libpsortb
libqes
librandom123
librcsb-core-wrapper
librdp-taxonomy-tree-java
librg-blast-parser-perl
librg-exception-perl
librg-utils-perl
librostlab-blast
libsbml
libsecrecy
libseqlib
libshrinkwrap
libsis-base-java
libsis-jhdf5-java
libslow5lib
libsmithwaterman
libsort-key-top-perl
libssw
libstreamvbyte
libtabixpp
libtecla
libtfbs-perl
libvbz-hdf-plugin
libvcflib
libvistaio
libwfa2
libxdf
libzeep
libzerg
libzerg-perl
lighter
loki
ltrsift
lucy
lumpy-sv
macs
maffilter
mafft
mapdamage
maq
maqview
maude
mauve-aligner
mcaller
mcl
medicalterms
megadepth
melting
mencal
metaphlan2-data
metastudent
metastudent-data-2
mhap
mialmpick
miaviewit
microbegps
microbiomeutil
minc-tools
miniasm
minimap
minimap2
mipe
mirtop
mlv-smile
mosdepth
mothur
mptp
mrbayes
mrc
mriconvert
mricron
multiqc
mummer
murasaki
muscle
muscle3
mustang
nanofilt
nanolyse
nanook
nanopolish
nanostat
nanosv
ncbi-acc-download
ncbi-entrez-direct
ncbi-seg
ncbi-tools6
neo
neobio
ngmlr
nibabel
nifticlib
nim-kexpr
nim-lapper
nipype
njplot
norsnet
norsp
nutsqlite
nxtrim
odil
odin
ont-fast5-api
opencfu
openslide
openslide-python
optimir
orthanc
orthanc-dicomweb
orthanc-gdcm
orthanc-imagej
orthanc-mysql
orthanc-neuro
orthanc-postgresql
orthanc-python
orthanc-webviewer
orthanc-wsi
oscar
pairtools
pal2nal
paml
papyrus
paraclu
parafly
parasail
parsinsert
parsnp
paryfor
patman
patsy
pbsim
pbsuite
pcalendar
pdb2pqr
peptidebuilder
perlprimer
perm
phast
phipack
phybin
phylip
phylonium
phyml
physamp
phyutility
phyx
picopore
piler
pilercr
pinfish
pique
pirs
pixelmed-codec
placnet
plasmidomics
plasmidseeker
plast
plink
plink1.9
plink2
plip
poa
populations
poretools
praat
prank
predictnls
presto
prime-phylo
primer3
prinseq-lite
proalign
probalign
probcons
proda
prodigal
profbval
profisis
profnet
profphd-utils
proftmb
progressivemauve
propka
prottest
provean
pscan-chip
pscan-tfbs
psignifit
pullseq
pvrg-jpeg
pybel
pybigwig
pycoqc
pycorrfit
pyensembl
pymia
pynn
pyode
pyqi
pyscanfcs
pysurfer
python-alignlib
python-anndata
python-bcbio-gff
python-bel-resources
python-bids-validator
python-bioblend
python-bioframe
python-biom-format
python-biopython
python-biotools
python-bx
python-cgecore
python-cgelib
python-cigar
python-cobra
python-csb
python-cutadapt
python-datacache
python-deeptools
python-deeptoolsintervals
python-dendropy
python-dicompylercore
python-dnaio
python-epimodels
python-etelemetry
python-fitbit
python-freecontact
python-geneimpacts
python-gffutils
python-gtfparse
python-hl7
python-intervaltree-bio
python-leidenalg
python-mne
python-nanoget
python-nanomath
python-pairix
python-pangolearn
python-pauvre
python-pbcommand
python-prefixed
python-py2bit
python-pyani
python-pybedtools
python-pycosat
python-pyfaidx
python-pyflow
python-pymummer
python-pysam
python-pyspoa
python-pyvcf
python-questplus
python-ruffus
python-scitrack
python-screed
python-sqt
python-tinyalign
python-treetime
python-wdlparse
pyxid
pyxnat
q2cli
q2-sample-classifier
q2templates
qcat
qiime
qrisk2
qsopt-ex
qtltools
quicktree
quitcount
radiant
ragout
rambo-k
rampler
raster3d
rate4site
raxml
ray
rdp-alignment
rdp-classifier
rdp-readseq
readerwriterqueue
readseq
readucks
reapr
recan
relacy
relion
repeatmasker-recon
reprof
resfinder
rnahybrid
roary
roguenarok
routine-update
rtax
ruby-rgfa
runcircos-gui
saint
salmid
samblaster
samclip
samtools
samtools-legacy
savvy
sbmltoolbox
scoary
scrappie
scrm
scythe
seaview
seer
seirsplus
seqkit
seqmagick
seqprep
seqtk
seqtools
seriation
setcover
sga
sibelia
sibsim4
sickle
sigma-align
sigviewer
sim4
simrisc
ska
skewer
smalt
snakemake
snap
sniffles
snpomatic
snp-sites
soapsnp
socket++
sorted-nearest
spaced
spdlog
spoa
sprai
spread-phy
squizz
srf
ssake
ssshtest
stacks
staden
staden-io-lib
stringtie
subread
suitename
sumaclust
sumalibs
sumatra
surpyvor
survivor
svim
sweed
swissknife
tantan
tao-config
tao-json
t-coffee
terraphast
thesias
tiddit
tigr-glimmer
tm-align
tnseq-transit
toil
tombo
toml11
tophat-recondition
toppred
tortoize
trace2dbest
tracetuner
transdecoder
transrate-tools
transtermhp
tree-puzzle#
treeviewx
trf
trim-galore
trimmomatic
trinculo
tvc
uc-echo
umis
uncalled
unifrac-tools
unikmer
varna
vcfanno
vcftools
velvet
velvetoptimiser
virulencefinder
vmatch
volpack
vt
vtk-dicom
wham-align
wise
xdffileio
xpore
xxsds-dynamic
yaggo
yaha
yanagiba
yanosim
A package name displayed with a bold
font is an indication that this package has a note. Visited
packages are linked in green, those which have not been visited are
linked in blue.
A #
sign after the name of a package
indicates that a bug is filed against it. Likewise, a
+
sign indicates there is a
patch available, a P
means a
pending bug while #
indicates a
closed bug. In cases of several bugs, the symbol is repeated.