maint_debian-med package set for bookworm/armhf

• All tracked package sets for bookworm/armhf

The package set maint_debian-med in bookworm/armhf consists of 959 packages:
24 (2.5%) packages failed to build reproducibly: segemehl biojava-live dicom3tools librostlab treeview liblemon twopaco gbrowse logol mira jebl2 libamplsolver filtlong shapeit4 emboss nipy parallel biojava5-live igraph metastudent-data porechop pixelmed ncbi-blast+ mia
36 (3.8%) packages failed to build from source: bbhash pyranges python-pbcore libbioparser-dev abpoa ismrmrd# bali-phy simde pychopper biojava6-live nim-hts spades pyfastx python-parasail gjh-asl-json flye libmaus2 q2-fragment-insertion dipy libthread-pool seqan-raptor conda-package-streaming milib ivar ball quorum pydicom bustools rapmap seqan-needle ncbi-igblast nitime sambamba seqan3 btllib xmedcon
148 (15.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: shasta python-cooler mapsembler2 obitools soapdenovo ntcard pftools gdpc prokka bmtk python-skbio fis-gtm elastix insighttoolkit5 kallisto salmon minia simka iqtree infernal bcalm mindthegap discosnp bowtie bio-eagle vsearch libstatgen khmer lambda-align2 sortmerna megahit metabat consensuscore diamond-aligner macsyfinder probabel mrtrix3 mecat2 ncbi-vdb rna-star bowtie2 kissplice hmmer pbcopper theseus soapaligner mash bolt-lmm kma swarm-cluster gdcm mmseqs2 snap-aligner insighttoolkit4 jellyfish1 python-loompy circlator q2-phylogeny soapdenovo2 cnvkit abyss xenium gatb-core spaln wtdbg2 sra-sdk seqan2 python-cogent genomicsdb plastimatch psortb fsm-lite sspace pbdagcon seqsero rsem busco resfinder-db gubbins gasic smrtanalysis artemis cat-bat pbbam fastqc drop-seq kmerresistance picard-tools pilon surankco nthash proteinortho king unicycler racon libjloda-java python-iow kraken skesa libgoby-java shovill plasmidid augur biobambam2 q2-dada2 qcumber malt blasr beagle chromhmm igv rockhopper snpsift sight kleborate srst2 libmmmulti libatomic-queue pizzly barrnap python-ete3 beast2-mcmc megan-ce minimac4 parallel-fastq-dump heudiconv pigx-rnaseq pbseqlib umap-learn snpeff metaphlan unifrac emperor paleomix q2-demux q2-metadata q2-alignment q2-cutadapt ariba q2-quality-filter q2-types q2-quality-control q2-diversity-lib q2-feature-classifier q2-emperor q2-taxa q2-feature-table htsjdk
751 (78.3%) packages successfully build reproducibly: abacas acedb adapterremoval adun.app aegean aeonbits-owner aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools beads beast-mcmc bedops bedtools berkeley-express bioawk biococoa biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq boxshade bppphyview bppsuite brian brig bwa camp canu capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk codonw coils concavity concurrentqueue conda-package-handling conservation-code covtobed crac ctdconverter ctdopts ctn ctsim cutesv cwlformat cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t dicomnifti dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freebayes freecontact fsa g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej imbalanced-learn indelible insilicoseq intake invesalius ipig iva jaligner jam-lib jellyfish jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjung-free-java libkmlframework-java libla4j-java libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpll libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsbml libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft mapdamage maq maqview maude mauve-aligner mcaller mcl medicalterms megadepth melting mencal metaphlan2-data metastudent metastudent-data-2 mhap mialmpick miaviewit microbegps microbiomeutil minc-tools miniasm minimap minimap2 mipe mirtop mlv-smile mosdepth mothur mptp mrbayes mrc mriconvert mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipype njplot norsnet norsp nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve propka prottest provean pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pymia pynn pyode pyqi pyscanfcs pysurfer python-alignlib python-anndata python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-intervaltree-bio python-leidenalg python-mne python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pysam python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2cli q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unifrac-tools unikmer varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vt vtk-dicom wham-align wise xdffileio xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.