Debian navigation

maint_debian-med package set for unstable/i386

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in unstable/i386
The package set maint_debian-med in unstable/i386 consists of:
None 100 (14.7%) packages failed to build reproducibly: libchado-perl python-csb r-cran-haplo.stats macsyfinder r-cran-phylobase gbrowse# cyvcf2 dcmtk sitplus mia jebl2 microbiomeutil r-cran-luminescence murasaki consensuscore ctsim axe-demultiplexer libqes mummer orthanc-webviewer r-cran-tidyselect autodock-vina elastix fis-gtm mothur phast cdbfasta golang-github-dataence-porter2 porechop bppsuite liblemon snakemake libace-perl metastudent-data acedb ginkgocadx g2 cassiopee gwama maffilter r-cran-tibble raster3d fw4spl mapsembler2 prime-phylo logol grabix r-cran-tidyr genometools dicom3tools r-bioc-genefilter r-bioc-shortread adun.app pdb2pqr r-other-mott-happy bamtools sleepyhead r-cran-dplyr bppphyview ismrmrd# librostlab-blast librostlab mira r-cran-rsqlite treeview clustalo libminc r-cran-scales seqtk libundead libpll emboss flexbar freecontact ffindex fastp gdcm r-bioc-deseq2 r-cran-webutils vtk-dicom fastx-toolkit opensurgsim r-cran-surveillance r-cran-raster odil r-bioc-variantannotation python-biopython ncbi-entrez-direct primer3 mcl estscan elph exonerate r-cran-purrr orthanc libhpptools tvc ncbi-blast+ bart iqtree
None 16 (2.4%) packages failed to build from source: python-mne# pbbam# pixelmed# simpleitk phybin libics igraph libbioparser-dev libcereal seqan2 libsbml libbiod librcsb-core-wrapper ball jmodeltest jellyfish
None None None None 85 (12.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: pftools fermi-lite khmer soapaligner soapdenovo falcon python-skbio snap-aligner# vsearch soapdenovo2 bwa swarm-cluster hhsuite rna-star sra-sdk plast parafly libssw bolt-lmm kissplice insighttoolkit4 hisat2 htslib## bowtie2 spoa libstatgen artemis blasr gasic fitgcp htseq bioperl-run giira kineticstools mhap pbseqlib pbbarcode pbgenomicconsensus pbalign ariba sambamba python-pbcore segemehl python-pbcommand qiime tophat fsm-lite pbh5tools sspace iva rsem libvcflib metaphlan2 srst2 spades pbdagcon qcumber paleomix freebayes samtools crac sga seqsero psortb python-pysam unicycler quorum cnvkit libseqlib hinge minimac4 centrifuge racon delly bedtools# circlator smalr bcftools### canu picard-tools camitk reapr rapmap diamond-aligner salmon
None 477 (70.4%) packages successfully build reproducibly: abacas abyss adapterremoval aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden artfastqgenerator art-nextgen-simulation-tools assemblytics augustus autodocksuite baitfisher bali-phy bambamc bandage barrnap bart-view beads beagle beast2-mcmc beast-mcmc bedops berkeley-express biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosquid biosyntax bio-tradis bitseq boxshade brig cain camp cct cd-hit cfflib cgview charls chromhmm chromimpute ciftilib circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalw clustalx codonw coils concavity conservation-code ctdconverter ctdopts ctn cwltool cycle daligner dascrubber dawg dazzdb dcm2niix debian-med deepnano dialign dialign-t dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem epcr epigrass examl fast5 fastaq fastdnaml fastlink fastml fastqc fastqtl fasttree figtree freemedforms-project fsa galileo garli gdpc gemma genometester gentle getdata gfapy gff2aplot gff2ps glam2 gnumed-client gnumed-server graphlan grinder gubbins gwyddion harvest-tools hilive hmmer hmmer2 hunspell-en-med hyphy idba imagej imagevis3d indelible infernal invesalius ipig jaligner jam-lib jellyfish1 jheatchart kalign king king-probe kmc kmer kraken lagan lamarc lambda-align last-align lefse libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libmems libmialm libmuscle libncl liboptions-java libpal-java libpsortb libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl libsis-base-java libsis-jhdf5-java## libsmithwaterman libsort-key-top-perl libtabixpp libtecla libtfbs-perl libthread-pool libvistaio libzeep libzerg libzerg-perl libzstd loki ltrsift lucy macs mafft mapdamage maq maqview mash maude mauve-aligner maxflow medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mialmpick miaviewit microbegps minc-tools minia miniasm minimap mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mptp mrbayes mriconvert mrs muscle mustang mypy nanook nanopolish ncbi-seg ncbi-tools6 neobio ngs-sdk# njplot norsnet norsp nutsqlite opencfu openslide openslide-python orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-wsi pal2nal paml papyrus paraclu parsinsert parsnp patman pbcopper pbsim pbsuite pcalendar perlprimer perm phipack phylip phyml physamp phyutility phyx piler pilon pirs pixelmed-codec placnet plasmidomics plasmidseeker plastimatch plink plink1.9 plip poa pondus populations poretools pp-popularity-contest praat prank predictnls predictprotein proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pscan-tfbs pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-bd2k python-biom-format python-biotools python-burrito python-bx python-bz2file python-clips python-cobra python-cogent python-colormap python-colormath python-cutadapt python-dendropy python-depinfo python-easydev python-fitbit python-freecontact python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-multipletau python-pipdeptree python-pyfaidx python-pyflow python-pymummer python-pyvcf python-qcli python-rdflib-jsonld python-schema-salad python-screed python-spectra python-sqlsoup python-treetime python-xopen qrisk2 qsopt-ex qtltools radiant rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq relion repeatmasker-recon reprof rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint samtools-legacy sbmltoolbox scrm scythe seaview seer seqan seqmagick seqprep seqtools sibsim4 sickle sigma-align sim4 smalt smrtanalysis snap sniffles snpomatic snp-sites soapsnp socket++ sofa-framework sortmerna spaced spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf ssake stacks staden staden-io-lib subread suitename sumaclust sumatra surankco sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align tnseq-transit toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic uc-echo varna vcftools velvet velvetoptimiser visionegg volpack wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.