maint_debian-med package set for bullseye/amd64

• All tracked package sets for bullseye/amd64

The package set maint_debian-med in bullseye/amd64 consists of 906 packages:
48 (5.3%) packages failed to build reproducibly: mapsembler2 fis-gtm brian librostlab minia libzeep python-anndata ncbi-blast+ emboss macsyfinder centrifuge treeview bali-phy sra-sdk mia hhsuite gdcm dicom3tools libstatgen mira htslib pydicom gbrowse hmmer gatb-core nitime mrtrix3 nipype logol libsbml kissplice macs cif-tools metastudent-data simrisc bmtk mypy insighttoolkit4 seqan2 ball python-cogent seqan3 shapeit4 gmap tree-puzzle# porechop last-align dcmtk
4 (0.4%) packages failed to build from source: vg rna-star spdlog pigx-rnaseq
854 (94.3%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arcp arden argh ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brig busco bustools bwa camitk camp canu cassiopee cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circlator circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling consensuscore conservation-code covtobed crac ctdconverter ctdopts ctn ctsim cwlformat cwltool cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix debian-med deepnano delly density-fitness dextractor dialign dialign-t diamond-aligner dicomnifti dicomscope dipy discosnp disulfinder dnaclust dnapi drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar freebayes freecontact fsa fsm-lite g2 galileo garli gasic gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib ginkgocadx gjh-asl-json glam2 gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gsort gubbins gwama gwyddion h5sparse harvest-tools hdmf hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igdiscover igor igraph iitii imagej indelible infernal insilicoseq invesalius ipig iqtree ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive khmer kineticstools king king-probe kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align lambda-align2 lastz lefse libace-perl libamplsolver libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbiod libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java liblemon libmaus2 libmems libmialm libminc libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpdb-redo libpj-java libpll libpsortb libqes libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy lumpy-sv maffilter mafft mapdamage maq maqview mash maude mauve-aligner mcl mecat2 medicalterms megahit melting mencal metabat metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps microbiomeutil milib minc-tools mindthegap miniasm minimac4 minimap minimap2 mipe mirtop mlv-smile mmseqs2 mosdepth mothur mptp mrbayes mrc mriconvert mricron multiqc mummer murasaki muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio ngmlr ngs-sdk nibabel nifti2dicom nifticlib nim-hts nim-kexpr nim-lapper njplot norsnet norsp nutsqlite obitools odil odin opencfu openslide openslide-python opensurgsim optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations poretools pplacer pp-popularity-contest praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka proteinortho prottest pscan-chip pscan-tfbs psignifit psortb psychopy pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pymia pynn pyode pyqi pyranges pyrle pyscanfcs pysurfer python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pairix python-parasail python-pauvre python-pbcommand python-pbcore+# python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-skbio python-spectra python-sqlsoup python-sqt python-streamz python-stubserver python-tinyalign python-treetime python-wdlparse python-wordcloud python-xopen pyxid pyxnat q2-alignment q2cli q2-cutadapt q2-dada2 q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-control q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid salmon sambamba samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus sepp seqkit seqmagick seqprep seqsero seqtk seqtools seriation sga shasta shovill sibelia sibsim4 sickle sight sigma-align sigviewer sim4 simde simka skesa skewer smalt smart-open smrtanalysis snakemake snap snap-aligner sniffles snpomatic snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo umap-learn umis uncalled unicycler varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt vtk-dicom wham-align wise wtdbg2 xdffileio xenium xmedcon yaggo yaha yanagiba yanosim zalign

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