Debian navigation

maint_debian-med package set for bullseye/amd64

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in bullseye/amd64
The package set maint_debian-med in bullseye/amd64 consists of 819 packages:
None 40 (4.9%) packages failed to build reproducibly: gbrowse vg logol hhsuite flexbar seqan2+ mira dicom3tools bowtie2 simrisc jmodeltest seqan3 centrifuge mypy mapsembler2 bali-phy macs libzeep gdcm metastudent-data insighttoolkit4 ball minia pydicom nitime treeview mummer gatb-core crac ncbi-blast+ kissplice dssp microbiomeutil hmmer circlator cif-tools emboss libsbml sra-sdk librostlab
None 11 (1.3%) packages failed to build from source: python-streamz pyranges python-pairix# hdmf pftools intake pplacer soapaligner igdiscover conda-package-handling raster3d
None None None None 1 (0.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: odil
None 767 (93.7%) packages successfully build reproducibly: abacas abyss adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align ampliconnoise andi anfo aragorn arcp arden argh ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bitseq bmtk bolt-lmm bowtie bppphyview bppsuite brig busco bustools bwa camitk camp canu cassiopee cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concurrentqueue consensuscore conservation-code covtobed ctdconverter ctdopts ctn ctsim cwlformat cwltool cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmtk debian-med delly dextractor dialign dialign-t diamond-aligner dicompyler dindel dipy discosnp disulfinder dnaclust dnapi drop-seq dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastlink fastml fastp fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash freebayes freecontact fsa fsm-lite g2 galileo garli gasic gdpc genometester genomethreader genometools gentle gfapy gff2aplot gff2ps ggd-utils ginkgocadx gjh-asl-json glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gubbins gwama gwyddion h5sparse harvest-tools hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk hts-nim-tools hunspell-en-med hyphy idba idseq-bench igor iitii imagej indelible infernal insilicoseq invesalius ipig iqtree ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart kalign kallisto kaptive khmer kineticstools king king-probe kleborate kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbiod libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java liblemon libmaus2 libmems libmialm libminc libmmap-allocator libmmmulti libmurmurhash libmuscle libncl liboptions-java libpj-java libpll libpsortb libqes libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libsis-base-java libsmithwaterman libsort-key-top-perl libssw libstatgen libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy lumpy-sv maffilter mafft mapdamage maq maqview mash maude mauve-aligner mcl mecat2 medicalterms megahit mencal metabat metaphlan2 metaphlan2-data metastudent mhap miaviewit microbegps milib minc-tools mindthegap miniasm minimap minimap2 mipe mirtop mlv-smile mmseqs2 mosdepth mothur mptp mrc mriconvert mricron multiqc murasaki muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio ngmlr ngs-sdk nibabel nifti2dicom nifticlib nim-hts nim-kexpr nim-lapper njplot norsnet norsp nutsqlite obitools opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbsim pcalendar pdb2pqr perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyx picard-tools picopore piler pilercr pilon pique pirs pixelmed pixelmed-codec pizzly placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations porechop poretools pp-popularity-contest praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka proteinortho prottest pscan-chip pscan-tfbs psychopy pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pymia pynn# pyode pyqi pyrle pysurfer python3-typed-ast python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format# python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-parasail python-pauvre python-pbcommand python-pbcore python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-skbio python-spectra python-sqlsoup python-sqt python-tinyalign python-treetime python-wordcloud python-xopen pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quorum racon radiant ragout rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rna-star roary roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint salmid salmon sambamba samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus sepp seqan seqmagick seqprep seqsero seqtk seqtools seriation sga shapeit4 sibelia sickle sight sigma-align sim4 simde+ skesa skewer smalt smart-open snakemake snap snap-aligner sniffles snpomatic snp-sites soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align toil tombo tophat-recondition trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo umis unicycler varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt vtk-dicom wise wtdbg2 xenium xmedcon yaggo yaha yanagiba yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.