maint_debian-med package set for trixie/amd64

• All tracked package sets for trixie/amd64

The package set maint_debian-med in trixie/amd64 consists of 880 packages:
43 (4.9%) packages failed to build reproducibly: cwltool python-trx-python librostlab mmlib emboss bmtk camitk liblemon mapsembler2 biojava-live ncbi-blast+ macsyfinder treeview gdcm porechop gbrowse dicom3tools twopaco python-pysam libpll segemehl gatb-core pixelmed iqtree metastudent-data tree-puzzle shapeit4 biojava6-live mrtrix3 htsjdk jebl2 unicycler igraph parallel ncbi-igblast btllib dipy seqan3 salmon pydicom filtlong fis-gtm hmmer
10 (1.1%) packages failed to build from source: unifrac-tools picard-tools rna-star gmap q2cliP python-cooler shasta python-mne nanopolish python-biopython
1 (0.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: libsecrecy
826 (93.9%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide andi any2fasta aragorn arden argh argtable2 ariba artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express bifrost bioawk bio-eagle biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brian brig busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind cutesv cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix debian-med dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drmaa drop-seq dssp dwgsim ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree ffindex figtree fitgcp flash flexbar flye freecontact fsa g2 garli gasic gatk-bwamem gatk-fermilite gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gnumed-client gnumed-server graphlan grinder gsort gubbins gwama gwyddion harmonypy hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba igor igv iitii illustrate imagej imbalanced-learn indelible infernal insighttoolkit5 insilicoseq ipig ismrmrd# iva ivar jaligner jam-lib jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive khmer kineticstools king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgff libgkarrays libgoby-java libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libomp-jonathonl liboptions-java libpal-java libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner mcaller mcl mecat2 medicalterms megadepth megahit megan-ce melting mencal metabat metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil minc-tools mindthegap minia miniasm minimac4 minimap minimap2 mipe mira mirtop mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo ngmlr nibabel nim-hts nim-kexpr nim-lapper nipy njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odin ont-fast5-api opencfu openslide openslide-python optimir orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore pigx-rnaseq piler pilercr pilon pinfish pique pirs pixelmed-codec pizzly placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynn pynwb pyode pyqi pyranges pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biotools python-bx python-cgecore python-cgelib python-cigar python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-iow python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-pbcore python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-skbio python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-alignment q2-cutadapt q2-diversity-lib q2-emperor q2-feature-table q2-fragment-insertion q2-metadata q2-phylogeny q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quorum racon radiant ragout rambo-k rampler rapmap raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue reapr recan relacy relion repeatmasker-recon reprof resfinder resfinder-db rnahybrid roary rockhopper roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools samtools-legacy savvy scoary scrappie scythe seaview seer seirsplus seqan2 seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seriation setcover sga shovill sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt snakemake snap snap-aligner sniffles snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spaln spdlog spoa sprai spread-phy squizz sra-sdk srf srst2 ssake sspace ssshtest stacks staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trimmomatic trinculo trinityrnaseq tvc uc-echo ugene umis uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vsearch vt wham-align wise wtdbg2 xdffileio xenium xpore xxsds-dynamic yaggo yaha yanagiba yanosim

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.