Debian navigation

maint_debian-med package set for bullseye/i386

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in bullseye/i386
The package set maint_debian-med in bullseye/i386 consists of 670 packages:
None 44 (6.6%) packages failed to build reproducibly: emboss phast camitk python-biopython segemehl libdeflate toil+ ball microbiomeutil mummer lambda-align treeview librcsb-core-wrapper loki consensuscore ncbi-blast+ libsbml porechop gdcm dicom3tools genometools metastudent-data mapsembler2 gatb-core mcl raster3d orthanc-webviewer fastp fis-gtm orthanc norsnet+ cdbfasta flexbar mothur mriconvert ginkgocadx bart mira tvc librostlab fastx-toolkit jmodeltest sleepyhead pixelmed
None 7 (1.0%) packages failed to build from source: samtools-legacy bcftools### gemma seqan2 simpleitk libbioparser-dev ncbi-vdb
None None None None 100 (14.9%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: fermi-lite khmer soapdenovo htslib## soapaligner swarm-cluster plast obitools snap-aligner# soapdenovo2 picard-tools artemis libssw sra-sdk pftools parafly bolt-lmm python-skbio bowtie rna-star hhsuite circlator spoa libstatgen diamond-aligner bwa cnvkit fastaq bowtie2 kissplice kallisto centrifuge libtabixpp bedtools mhap fitgcp python-pysam python-sqt nanopolish pbh5tools spades python-pbcommand python-pbcore gasic smalt kineticstools seqsero reapr metaphlan2 tophat libvcflib sga racon fsm-lite giira bio-eagle tnseq-transit pbbarcode pbdagcon smalr sspace iva psortb htseq pbbam# hinge qcumber freebayes trinityrnaseq grabix srst2 stacks canu augustus libseqlib delly bcbio minimac4 bioperl-run unicycler rapmap fastqtl blasr quorum pbseqlib unanimity cyvcf2 pbalign ariba qtltools pbgenomicconsensus umis python-gffutils paleomix crac rsem salmon python-pybedtools samtools vsearch
None 519 (77.5%) packages successfully build reproducibly: abacas acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden artfastqgenerator art-nextgen-simulation-tools assemblytics autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bamtools bandage barrnap bart-view beads beagle beast2-mcmc beast-mcmc bedops berkeley-express biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl biosquid biosyntax bio-tradis bitseq boxshade bppphyview bppsuite brig cain camp cassiopee cct cd-hit cfflib cgview changeo charls chromhmm chromimpute ciftilib circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx coils concavity conservation-code ctdconverter ctdopts ctn ctsim cwltool cycle daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano dialign dialign-t dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem epcr estscan examl exonerate fast5 fastdnaml fastlink fastml fastqc fasttree ffindex figtree freecontact freemedforms-project fsa fw4spl g2 galileo garli gdpc genometester gentle getdata gfapy gff2aplot gff2ps ghmm glam2 gnumed-client gnumed-server golang-github-dataence-porter2 graphlan grinder gubbins gwama gwyddion harvest-tools hilive hmmer hmmer2 htsjdk hunspell-en-med hyphy idba igor igraph imagej imagevis3d indelible infernal insighttoolkit4 invesalius iqtree ismrmrd# jaligner jam-lib jebl2 jellyfish1 jheatchart kalign king king-probe kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align2 last-align lefse libace-perl libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java liblemon libmems libmialm libminc libmurmurhash libmuscle libncl liboptions-java libpal-java libpll libpsortb libqes libquazip librandom123 librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsis-base-java libsmithwaterman libsort-key-top-perl libtecla libtfbs-perl libthread-pool libundead libvistaio libxdf libzeep libzerg libzerg-perl libzstd ltrsift lucy macs maffilter mafft mapdamage maq maqview mash maude mauve-aligner maxflow medicalterms melting mencal metaphlan2-data metastudent metastudent-data-2 mia mialmpick miaviewit microbegps milib minc-tools minia miniasm minimap minimap2 mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mptp mrbayes mrs murasaki muscle mustang mypy nanook ncbi-entrez-direct ncbi-seg ncbi-tools6 neobio ngs-sdk# njplot norsp nutsqlite odil opencfu openslide openslide-python opensurgsim orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-wsi pal2nal paml papyrus paraclu parsinsert parsnp patman pbcopper pbsim pbsuite pcalendar pdb2pqr perlprimer perm phipack phybin phylip phyml physamp phyutility phyx piler pilercr pilon pirs pixelmed-codec placnet plasmidomics plasmidseeker plastimatch plink plink1.9 plip pondus populations poretools pp-popularity-contest praat prank predictnls predictprotein prime-phylo primer3 proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pscan-chip pscan-tfbs pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-biom-format python-biotools python-bx python-bz2file python-cgecore python-clips python-cobra python-cogent python-colormap python-colormath python-csb python-cutadapt python-dendropy python-depinfo python-easydev python-fitbit python-freecontact python-geneimpacts python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-mne python-multipletau python-mypy-extensions python-pipdeptree python-pyfaidx python-pyflow python-pymummer python-pyvcf python-qcli python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-spectra python-sqlsoup python-treetime python-xopen q2cli qrisk2 qsopt-ex radiant rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq relion repeatmasker-recon reprof rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster sbmltoolbox scoary scrm scythe seaview seer seqan seqmagick seqprep seqtk seqtools sibsim4 sickle sigma-align sim4 snakemakeP snap sniffles snpomatic snp-sites soapsnp socket++ sofa-framework sortmerna spaced spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf ssake staden staden-io-lib subread suitename sumaclust sumatra surankco swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic uc-echo varna vcftools velvet velvetoptimiser volpack vtk-dicom wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.