maint_debian-med package set for bullseye/i386

• All tracked package sets for bullseye/i386

The package set maint_debian-med in bullseye/i386 consists of 906 packages:
47 (5.2%) packages failed to build reproducibly: python-pairix fis-gtm tree-puzzle# python-anndata macsyfinder spaln brian centrifuge bali-phy dicom3tools emboss hmmer libdeflate porechop jellyfish ngs-sdk minia treeview gdcm consensuscore pydicom last-align librostlab mira hhsuite htslib tvc minimap2 mia gbrowse nipype logol segemehl ncbi-blast+ gatb-core macs metastudent-data libzeep cif-tools libamplsolver simrisc ball python-cogent libsbml filtlong freebayes shapeit4
25 (2.8%) packages failed to build from source: nim-hts bbhash pyranges umap-learn xenium resfinder-db python-streamz libbiod libbioparser-dev bcftools python-pbcore+# spades ncbi-vdb quorum nitime mypy skesa picard-tools pinfish pplacer seqan3 gjh-asl-json insighttoolkit4 python-skbio bustools
76 (8.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: vsearch diamond-aligner gdpc bowtie circlator mash megahit soapdenovo2 kissplice prokka rna-star soapdenovo mapsembler2 pbcopper mrtrix3 obitools snap-aligner salmon artemis mecat2 lambda-align2 libstatgen swarm-cluster bowtie2 pftools cnvkit khmer soapaligner shasta bmtk rapmap vg sra-sdk qcumber metaphlan2 cat-bat pbdagcon libmmmulti libatomic-queue q2-feature-classifier pbseqlib king q2-alignment q2-taxa q2-quality-control q2-quality-filter sambamba smrtanalysis fsm-lite sspace seqsero minimac4 srst2 psortb kleborate proteinortho blasr python-ete3 rsem gasic parallel-fastq-dump ariba shovill plasmidid q2-demux pigx-rnaseq q2-dada2 q2-cutadapt q2-metadata q2-types pbbam trinityrnaseq unicycler sepp q2-feature-table paleomix
758 (83.7%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arcp arden argh artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage barrnap bart bart-view bbmap bcalm beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biobambam2 biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade bppphyview bppsuite brig busco bwa camitk camp canu cassiopee cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conservation-code covtobed crac ctdconverter ctdopts ctn ctsim cwlformat cwltool cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly density-fitness dextractor dialign dialign-t dicomnifti dicomscope dipy discosnp disulfinder dnaclust dnapi drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib ginkgocadx glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gsort gubbins gwama gwyddion h5sparse harvest-tools hdmf hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igdiscover igor igraph iitii imagej indelible infernal insilicoseq invesalius ipig iqtree ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish1 jheatchart jmodeltest kalign kallisto kaptive kineticstools king-probe klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align lastz lefse libace-perl libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbio-tools-run-remoteblast-perl libbio-variation-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java liblemon libmaus2 libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpdb-redo libpj-java libpll libpsortb libqes libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy lumpy-sv maffilter mafft mapdamage maq maqview maude mauve-aligner mcl medicalterms melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps microbiomeutil milib minc-tools mindthegap miniasm minimap mipe mirtop mlv-smile mmseqs2 mosdepth mothur mptp mrbayes mrc mriconvert mricron multiqc mummer murasaki muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr nibabel nifti2dicom nifticlib nim-kexpr nim-lapper njplot norsnet norsp nutsqlite odil odin opencfu openslide openslide-python opensurgsim optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pique pirs pixelmed pixelmed-codec pizzly placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations poretools pp-popularity-contest praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prottest pscan-chip pscan-tfbs psignifit psychopy pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pymia pynn pyode pyqi pyrle pyscanfcs pysurfer python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-parasail python-pauvre python-pbcommand python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-spectra python-sqlsoup python-sqt python-stubserver python-tinyalign python-treetime python-wdlparse python-wordcloud python-xopen pyxid pyxnat q2cli q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer seirsplus seqan2 seqkit seqmagick seqprep seqtk seqtools seriation sga sibelia sibsim4 sickle sight sigma-align sigviewer sim4 simde simka skewer smalt smart-open snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spaced spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf ssake stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco survivor svim sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo uc-echo umis uncalled varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vt vtk-dicom wham-align wise wtdbg2 xdffileio xmedcon yaggo yaha yanagiba yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.