maint_debian-med package set for trixie/i386

• All tracked package sets for trixie/i386

The package set maint_debian-med in trixie/i386 consists of 872 packages:
26 (3.0%) packages failed to build reproducibly: liblemon dicom3tools python-pysam porechop hmmer gbrowse treeview gdcm twopaco librostlab libpll macsyfinder segemehl ncbi-blast+ iqtree metastudent-data parallel shapeit4 dipy consensuscore nitime libsbml filtlong libcifpp igraph jebl2
24 (2.8%) packages failed to build from source: libmaus2 abpoa pyranges seqan-raptor python-mne python-pbcore btllib pydicom seqan3 probabel bbhash gatk-bwamem libbioparser-dev scrm tao-json gjh-asl-json ncbi-igblast prime-phylo mcl flye unifrac-tools ugene bifrost minc-tools
117 (13.4%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: python-cooler swarm-cluster soapaligner xenium fis-gtm lambda-align2 shasta bmtk mrtrix3 salmon mmseqs2 pftools megahit mapsembler2 mecat2 insighttoolkit5 jellyfish1 kissplice kallisto gdpc snap-aligner simka minia discosnp mash soapdenovo2 wtdbg2 bcalm gatb-core bowtie pbcopper diamond-aligner spaln libvcflib spades sra-sdk ncbi-vdb soapdenovo kma trinityrnaseq libstatgen minimac4 itkadaptivedenoising paleomix fastqc htsjdk rna-star camitk pilon sspace deblur jellyfish artemis libatomic-queue libmmmulti plastimatch gasic pysurfer pizzly ariba sight srst2 cnvkit kleborate metaphlan seqsero itkgenericlabelinterpolator proteinortho fastp ants bowtie2 king resfinder-db kmerresistance rsem picard-tools drop-seq crac plasmidid parallel-fastq-dump skesa beagle unifrac seqan-needle pbseqlib qcumber pigx-rnaseq fsm-lite centrifuge shovill surankco libgoby-java unicycler abyss python-iow beast-mcmc rockhopper rapmap libhttp-nio-java nthash cat-bat python-ete3 chromhmm ntcard emboss igv kraken pbbam embassy-domalign snpsift snpeff embassy-domsearch metaeuk embassy-domainatrix libwfa2 emperor pbdagcon
705 (80.8%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap bcftools beast2-mcmc bedops bedtools berkeley-express bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade bppphyview bppsuite brig busco bwa camp capsule-maven-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange dssp dwgsim ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastq-pair fastqtl fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hunspell-en-med hyphy icb-utils idba igor illustrate imagej imbalanced-learn indelible infernal insilicoseq invesalius ipig ismrmrd# iva ivar jaligner jam-lib jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview maude mauve-aligner mcaller mcl14 medicalterms megadepth megan-ce melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib miniasm minimap minimap2 mipe mira mirtop mmlib mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 neo neobio ngmlr nibabel nifticlib njplot norsnet nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools prank presto prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest pscan-chip psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyscanfcs python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-prefixed python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scythe seaview seer seirsplus seqan2 seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde ska skewer smalt snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spaced spdlog spoa sprai spread-phy srf ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename surpyvor survivor svim sweed swissknife tantan tao-config t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.