maint_debian-med package set for trixie/i386

• All tracked package sets for trixie/i386

The package set maint_debian-med in trixie/i386 consists of 907 packages:
27 (3.0%) packages failed to build reproducibly: liblemon macsyfinder dicom3tools hmmer biojava-live porechop gbrowse twopaco treeview libpll pixelmed jebl2 iqtree ncbi-blast+ segemehl metastudent-data parallel igraph dipy shapeit4 biojava6-live filtlong python-pysam librostlab mmlib gdcm dcmtk
29 (3.2%) packages failed to build from source: bcftools abpoa flye python-biom-format bifrost pyranges libbioparser-dev gatk-bwamem python-pbcore q2cliP scrm tao-json gjh-asl-json nim-hts cwltool seqan-raptor seqan3 bustools rapmap pydicom probabel btllib bbhash unifrac-tools quorum ncbi-igblast ugene python-mne seqan-needle
122 (13.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: abyss minia mash gdpc shasta discosnp mindthegap bcalm gatb-core kissplice simka snap-aligner bowtie swarm-cluster python-skbio pbcopper spades q2-phylogeny diamond-aligner rna-star spaln khmer python-cooler kallisto trinityrnaseq ncbi-vdb soapdenovo sra-sdk elastix soapaligner soapdenovo2 xenium lambda-align2 wtdbg2 libstatgen mrtrix3 salmon pftools vsearch mmseqs2 mapsembler2 qcumber metaphlan seqsero megahit mecat2 sambamba embassy-domalign embassy-domsearch obitools emboss embassy-domainatrix bmtk htsjdk pigx-rnaseq king pbseqlib centrifuge plastimatch jellyfish1 fis-gtm unifrac q2-diversity-lib kma libvcflib fastp sspace insighttoolkit5 paleomix fastqc bowtie2 rsem fsm-lite kmerresistance pilon resfinder-db skesa plasmidid proteinortho unicycler shovill surankco parallel-fastq-dump picard-tools drop-seq beagle nthash cat-bat chromhmm libgoby-java beast-mcmc minimac4 python-iow pbbam igv emperor snpsift q2-taxa q2-fragment-insertion libwfa2 snpeff rockhopper kraken pbdagcon metaeuk q2-emperor q2-alignment q2-metadata q2-quality-filter libatomic-queue camitk q2-cutadapt libmmmulti q2-feature-table python-ete3 gasic q2-types pizzly ntcard kleborate srst2 ariba
729 (80.4%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap beads beast2-mcmc bedops bedtools berkeley-express bioawk biobambam2 bio-eagle biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade bppphyview bppsuite brig busco bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed crac ctdconverter ctdopts ctffind cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix debian-med delly dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastq-pair fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba igor iitii illustrate imagej imbalanced-learn indelible infernal insilicoseq ipig ismrmrd# iva ivar jaligner jam-lib jellyfish jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview maude mauve-aligner mcaller mcl medicalterms megadepth megan-ce melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools miniasm minimap minimap2 mipe mira mirtop mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy njplot norsnet norsp nutsqlite nxtrim odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynn pynwb pyode pyqi pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy scoary scrappie scythe seaview seer seirsplus seqan2 seqkit seqmagick seqprep seqtk seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.