maint_debian-med package set for forky/arm64

• All tracked package sets for forky/arm64

The package set maint_debian-med in forky/arm64 consists of 899 packages:
44 (4.9%) packages failed to build reproducibly: libslow5lib+ bmtk cyvcf2 biosig nim-hts+ twopaco seqan3 igraph virulencefinder+ hmmer spaln+ parallel phybin emboss python-trx-python primer3 nipy tree-puzzle crac nitime infernal libgzstream pbseqlib cnrun surankco macsylib microbiomeutil+ samtools treeview libpll bedtools psychtoolbox-3 pinfish bart ncbi-igblast metastudent-data vt+ python-pysam libsbml libgdf dicom3tools python-pybedtools ivar ncbi-blast+
5 (0.6%) packages failed to build from source: bwa-mem2 genomicsdb rapmap libmaus2 garli
30 (3.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: bolt-lmm mecat2 elastix fis-gtm libstatgen sortmerna spades wtdbg2 cde soapdenovo soapdenovo2 soapaligner xenium bio-eagle pftools subarch-select megahit insighttoolkit5 iqtree theseus probabel minimac4 itkadaptivedenoising sight ants# shovill biobambam2 gubbins itkgenericlabelinterpolator plastimatch
820 (91.2%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy ball bambamc bamclipper bamkit bamtools bandage barrnap bbhash bbmap bcftools beads beagle beast-mcmc bedops berkeley-express bifrost bioawk biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosquid biosyntax bio-tradis bio-vcf bitseq blasr bowtie bowtie2 boxshade bppphyview bppsuite brian# brig btllib busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin cl-pubmed clustalo clustalw clustalx cmtk codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming connectome-workbench consensuscore conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope dipy disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo gasic gatk-bwamem gatk-fermilite gdcm gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap grabix graphlan grinder gsort gwama gwyddion harmonypy harvest-tools hdmf hhsuite hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej imbalanced-learn indelible insilicoseq ipig iqtree3 ismrmrd# iva jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kaptive king king-probe kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-seqfeature-perl libbio-db-swissprot-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdicom libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgff libgkarrays libgoby-java libgo-perl libgtextutils libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjung-free-java libkmlframework-java libla4j-java libleidenalg liblemon libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeem libzeep libzerg libzerg-perl lighter loki lucy lumpy-sv macsyfinder maffilter mafft mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 medicalterms megadepth melting mencal metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mia microbegps milib minc-tools miniasm minimap minimap2 mipe mira mirtop mlv-smile mmlib mmseqs2 mosdepth mothur mptp mrc mricron multiqc mummer muscle muscle3 mustang nanofilt nanolyse nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio neurodebian ngmlr nibabel nifticlib nim-kexpr nim-lapper njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odil odin optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidid plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto prime-phylo prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pydicom pyensembl pyfastx pymia pynn pynwb pyode pyqi pyscanfcs python-acres python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biom-format# python-biopython python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-citeable python-cobra python-cogent python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils# python-gtfparse python-hl7 python-hmmlearn python-ihm python-intervaltree-bio python-leidenalg python-loky python-loompy python-mne python-modelcif python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-prefixed python-ptufile python-py2bit python-pyani python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-ruffus python-scinexus python-scitrack python-screed python-scverse-misc python-sercol python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary roguenarok rsem rtax rtfilter ruby-rgfa runcircos-gui saint salmid salmon sambamba samblaster samclip samtools-legacy savvy sbmltoolbox scikit-bio-binaries scrappie scrm scythe seaview seer segemehl seirsplus seqan2 seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seriation setcover sga shapeit4 shasta sibelia sibsim4 sickle sideretro sigma-align sigviewer sim4 simde simrisc ska skesa skewer smalt snakemake snap snap-aligner sniffles snpeff snpomatic snpsift snp-sites soapsnp socket++ sorted-nearest sourmash spaced spdlog spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo uc-echo ugene unifrac-tools unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree vmatch volpack vsearch wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.