maint_debian-med package set for forky/arm64

• All tracked package sets for forky/arm64

The package set maint_debian-med in forky/arm64 consists of 883 packages:
39 (4.4%) packages failed to build reproducibly: ncbi-igblast librostlab hmmer libgdf mrtrix3 pydicom python-biopython ivar crac pixelmed-codec biosquid+ cyvcf2 python-biom-format# python-gffutils# velvet libslow5lib macsyfinder libgzstream microbiomeutil samtools twopaco insilicoseq+ python-pyvcf# dicom3tools bedtools seqan3 brian grabix infernal treeview libpll parallel nitime kallisto macs vmatch python-pysam vt+ igraph
15 (1.7%) packages failed to build from source: seqan2 genomicsdb biojava6-live rapmap libmaus2 phybin ncbi-blast+ bwa-mem2 mia unifrac-tools metastudent-data pyranges dipy ball python-deeptools
33 (3.7%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: elastix bolt-lmm mecat2 pftools fis-gtm iqtree sortmerna insighttoolkit5 megahit spades wtdbg2 cde libstatgen xenium soapdenovo soapdenovo2 soapaligner probabel bmtk theseus bio-eagle subarch-select minimac4 itkadaptivedenoising plastimatch unicycler sight gubbins ants# shovill biobambam2 psortb itkgenericlabelinterpolator
796 (90.1%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc bedops berkeley-express bifrost bioawk biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosyntax bio-tradis bio-vcf bitseq blasr bowtie bowtie2 boxshade bppphyview bppsuite brig btllib busco bustools bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin cl-pubmed clustalo clustalw clustalx cmtk cnrun cnvkit coils concavity concurrentqueue conda-package-handling consensuscore conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med deblur+ delly dextractor dialign dialign-t diamond-aligner dicomscope discosnp disulfinder dnaclust dnapi dnarrange drop-seq dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar flye freebayes freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gatk-fermilite gdcm gdpc gemma genometester genomethreader genometools getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server graphlan grinder gsort gwama harmonypy harvest-tools hdmf hhsuite hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej indelible invesalius ipig ismrmrd# iva jaligner jebl2 jellyfish jellyfish1 jheatchart kalign kaptive king kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align lambda-align2 last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-swissprot-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgoby-java libgtextutils libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjloda-java libjung-free-java libla4j-java liblemon libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 medicalterms megadepth megan-ce melting metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap microbegps milib minc-tools minia minimap minimap2 mipe mira mirtop mmlib mmseqs2 mosdepth mothur mptp mrbayes mrc multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 ncbi-vdb neo neobio ngmlr nibabel nifticlib nim-hts+ nim-kexpr nim-lapper nipy njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert# parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pinfish pique pirs pixelmed pizzly placnet plasmidid plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto# prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pymia pynn pynwb pyode pyqi pyscanfcs python-acres python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-fitbit python-freecontact python-geneimpacts python-gtfparse python-hl7 python-hmmlearn python-ihm python-intervaltree-bio python-iow python-loompy python-mne python-modelcif python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pymummer# python-pyspoa python-questplus python-ruffus python-scitrack python-screed python-sercol python-skbio python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat+ q2templates qcat# qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-readseq readerwriterqueue readucks reapr recan relacy repeatmasker-recon resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok rsem rtax rtfilter ruby-rgfa runcircos-gui saint salmid salmon sambamba samblaster samclip samtools-legacy savvy scoary scrappie scrm scythe seaview seer segemehl seirsplus seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seqtools seriation setcover sga shapeit4 shasta sibelia sibsim4 sickle sideretro sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer snakemake snap snap-aligner sniffles snippy snpeff snpomatic snpsift snp-sites soapsnp socket++ sorted-nearest sourmash spaced spaln spdlog spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread sumaclust sumalibs sumatra surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee thesias tiddit tigr-glimmer tm-align toil tombo toml11 tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle+ treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq uc-echo ugene unifrac unikmer varna vcfanno vcftools velvetoptimiser veryfasttree volpack vsearch vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.