maint_debian-med package set for forky/arm64

• All tracked package sets for forky/arm64

The package set maint_debian-med in forky/arm64 consists of 895 packages:
45 (5.0%) packages failed to build reproducibly: python-biom-format+ nitime python-gffutils libgzstream microbiomeutil+ samtools mrtrix3 brian grabix+ pydicom ncbi-igblast parallel infernal treeview libpll bedtools metastudent-data libslow5lib libsbml vt+ python-pysam dicom3tools ivar python-pybedtools macs seqan3 ncbi-blast+ bmtk cyvcf2 nim-hts+ twopaco igraph emboss virulencefinder+ hmmer spaln python-biopython pinfish phybin primer3 libgdf python-trx-python tree-puzzle deblur+ crac
12 (1.3%) packages failed to build from source: qtltools porechop bwa-mem2 salmon gatk-fermilite libmaus2 capsule-maven-nextflow genomicsdb rapmap shasta cwltool unifrac-tools
31 (3.5%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: theseus bio-eagle pftools subarch-select megahit insighttoolkit5 bolt-lmm mecat2 elastix fis-gtm iqtree sortmerna libstatgen spades wtdbg2 cde soapdenovo soapdenovo2 probabel soapaligner biobambam2 ants# minimac4 itkgenericlabelinterpolator itkadaptivedenoising gubbins psortb camitk plastimatch shovill xenium
807 (90.2%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbhash bbmap bcalm bcftools beads beagle bedops berkeley-express bifrost bioawk biojava4-live biojava6-live biojava-live biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bio-vcf bitseq blasr bowtie bowtie2 boxshade bppphyview bppsuite brig btllib busco bustools bwa camp capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin cl-pubmed clustalo clustalw clustalx cmtk cnrun codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming consensuscore conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope dipy discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flye freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gatk-bwamem gdcm gdpc genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server graphlan grinder gsort gwama harmonypy harvest-tools hdmf hhsuite hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor igv iitii illustrate imagej indelible insilicoseq invesalius ipig ismrmrd# iva jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kaptive king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-seqfeature-perl libbio-db-swissprot-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgff libgkarrays libgo-perl libgtextutils libhac-java libhat-trie libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg liblemon libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki lucy lumpy-sv macsyfinder macsylib maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 medicalterms megadepth megan-ce melting mencal metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mia microbegps milib minc-tools minia miniasm minimap minimap2 mipe mira mirtop mlv-smile mmlib mmseqs2 mosdepth mothur mptp mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio neurodebian ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odil odin ont-fast5-api openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidid plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto prime-phylo prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyfastx pymia pynn pynwb pyode pyqi pyranges pyscanfcs python-acres python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-fitbit python-freecontact python-geneimpacts python-gtfparse python-hl7 python-hmmlearn python-ihm python-intervaltree-bio python-iow python-leidenalg python-modelcif python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-prefixed python-py2bit python-pyani python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sercol python-skbio python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex quicktree quitcount quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok routine-update rsem rtax rtfilter ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seer# segemehl seirsplus seqan2 seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seriation setcover sga shapeit4 sibelia sibsim4 sickle sideretro sigma-align sim4 simde simka simrisc ska skesa skewer smalt snap snap-aligner sniffles snpeff snpomatic snpsift snp-sites soapsnp socket++ sorted-nearest spaced spdlog spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo uc-echo uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree vmatch volpack vsearch vtk-dicom wham-align wise xdffileio xmedcon xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.