Debian navigation

maint_debian-med package set for buster/amd64

Debian package sets:
desktop package sets:
Debian distribution package sets:
maintenance team package sets:

package set maint_debian-med in buster/amd64
The package set maint_debian-med in buster/amd64 consists of 674 packages:
None 37 (5.5%) packages failed to build reproducibly: macsyfinder fastx-toolkit fis-gtm ncbi-blast+ librostlab iqtree crac ffindex mira bowtie2 centrifuge trinityrnaseq gbrowse microbiomeutil metastudent-data mummer raster3d treeview camitk grabix logol sra-sdk lambda-align mapsembler2 dicom3tools gatb-core jmodeltest ball toil pixelmed emboss gdcm flexbar htslib## libsbml sleepyhead python-biopython
None 7 (1.0%) packages failed to build from source: epcr libmurmurhash libstatgen simpleitk artemis picard-tools seqan
None None None None 1 (0.1%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2
None 629 (93.3%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden ariba artfastqgenerator art-nextgen-simulation-tools assemblytics augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamtools bandage barrnap bart bart-view bcbio bcftools### beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biococoa bio-eagle biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bitseq blasr bolt-lmm bowtie boxshade bppphyview bppsuite brig bwa cain camp canu cassiopee cct cdbfasta cd-hit cfflib cgview changeo charls chromhmm chromimpute ciftilib circlator circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity consensuscore conservation-code ctdconverter ctdopts ctn ctsim cwltool cycle cyvcf2 daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem estscan examl exonerate fast5 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite figtree fitgcp freebayes freecontact freemedforms-project fsa fsm-lite fw4spl g2 galileo garli gasic gdpc gemma genometester genometools gentle getdata gfapy gff2aplot gff2ps ghmm giira ginkgocadx glam2 gnumed-client gnumed-server golang-github-dataence-porter2 graphlan grinder gubbins gwama gwyddion harvest-tools hhsuite hilive hinge hisat2 hmmer hmmer2 htseq htsjdk hunspell-en-med hyphy idba igor igraph imagej imagevis3d indelible infernal insighttoolkit4 invesalius ipig ismrmrd# iva jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart kalign khmer kineticstools king king-probe kissplice kmc kmer kraken lagan lamarc lambda-align2 last-align lefse libace-perl libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libjbzip2-java libjloda-java libjung-free-java libkmlframework-java liblemon libmems libmialm libminc libmuscle libncl liboptions-java libpal-java libpll libpsortb libqes libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libseqlib libsis-base-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libundead libvcflib libvistaio libxdf libzeep libzerg libzerg-perl libzstd loki ltrsift lucy macs maffilter mafft mapdamage maq maqview mash maude mauve-aligner maxflow mcl medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap mia mialmpick miaviewit microbegps milib minc-tools minia miniasm minimac4 minimap minimap2 mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mothur mptp mrbayes mrs murasaki muscle mustang mypy nanook nanopolish ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neobio ngs-sdk njplot norsnet norsp nutsqlite obitools odil opencfu openslide openslide-python opensurgsim orthanc orthanc-dicomweb orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-webviewer orthanc-wsi pal2nal paleomix paml papyrus paraclu parafly parsinsert parsnp patman pbalign pbbam pbbarcode pbcopper pbdagcon pbgenomicconsensus pbh5tools pbseqlib pbsim pbsuite pcalendar pdb2pqr perlprimer perm pftools phast phipack phybin phylip phyml physamp phyutility phyx piler pilon pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plastimatch plink plink1.9 plip poa pondus populations porechop poretools pp-popularity-contest praat prank predictnls predictprotein prime-phylo primer3 proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd profphd-utils proftmb progressivemauve proteinortho prottest pscan-chip pscan-tfbs psortb pvrg-jpeg pycorrfit pymia pynast pyqi pyscanfcs python3-typed-ast python-avro python-biom-format python-biotools python-burrito python-bx python-bz2file python-clips python-cobra python-cogent python-colormap python-colormath python-csb python-cutadapt python-dendropy python-depinfo python-easydev python-fitbit python-freecontact python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-mypy-extensions python-pbcommand python-pbcore python-pipdeptree python-pybedtools python-pyfaidx python-pyflow python-pymummer python-pysam python-pyvcf python-qcli python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-spectra python-sqlsoup python-sqt python-treetime python-xopen qcumber qrisk2 qsopt-ex qtltools+ quorum racon radiant rambo-k rampler rapmap rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr relion repeatmasker-recon reprof rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid salmon samblaster samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer segemehl seqmagick seqprep seqsero seqtk seqtools sga sibsim4 sickle sigma-align sim4 smalr smalt snakemake snap snap-aligner sniffles snpomatic snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sofa-framework sortmerna spaced spades spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib subread suitename sumaclust sumatra surankco swarm-cluster sweed swissknife tantan t-coffee theseus tifffile tigr-glimmer tm-align tnseq-transit tophat toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic tvc uc-echo unanimity unicycler varna vcftools velvet velvetoptimiser volpack vsearch vtk-dicom wise xmedcon yaggo yaha zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.