maint_debian-med package set for bullseye/arm64

• All tracked package sets for bullseye/arm64

The package set maint_debian-med in bullseye/arm64 consists of 906 packages:
28 (3.1%) packages failed to build reproducibly: simrisc mapsembler2 python-anndata bali-phy centrifuge hhsuite pydicom gdcm dicom3tools treeview metastudent-data emboss mira librostlab htslib libzeep gbrowse mia libsbml nipype mrtrix3 logol macs kissplice cif-tools ball ncbi-blast+ seqan3
6 (0.7%) packages failed to build from source: python-streamz spades mypy pychopper vg nitime
52 (5.7%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: xenium rapmap hmmer relion insighttoolkit4 metabat libstatgen megahit iqtree sortmerna consensuscore artemis soapdenovo2 mecat2 bio-eagle soapaligner soapdenovo prokka lambda-align2 circlator obitools bmtk elastix infernal bolt-lmm pftools plink1.9 fis-gtm ncbi-vdb swarm-cluster sra-sdk macsyfinder libatomic-queue sight smrtanalysis plastimatch libmmmulti camitk barrnap shovill minimac4 skesa parallel-fastq-dump psortb plasmidid q2-dada2 unicycler nifti2dicom gubbins seqsero sepp ginkgocadx
820 (90.5%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arcp arden argh ariba artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage bart bart-view bbhash bbmap bcalm bcftools beads beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biobambam2 biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq blasr bowtie bowtie2 boxshade bppphyview bppsuite brian brig busco bustools bwa camp canu cassiopee cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cnvkit codonw coils concavity concurrentqueue conda-package-handling conservation-code covtobed crac ctdconverter ctdopts ctn ctsim cwlformat cwltool cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly density-fitness dextractor dialign dialign-t diamond-aligner dicomnifti dicomscope dipy discosnp disulfinder dnaclust dnapi drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax enlighten epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex figtree filtlong fitgcp flash flexbar freebayes freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gdpc gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gsort gwama gwyddion h5sparse harvest-tools hdmf hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igdiscover igor igraph iitii imagej indelible insilicoseq invesalius ipig ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kallisto kaptive khmer kineticstools king king-probe kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align last-align lastz lefse libace-perl libamplsolver libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbiod libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjloda-java libjung-free-java libkmlframework-java libla4j-java liblemon libmaus2 libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl libnewuoa liboptions-java libpal-java libpdb-redo libpj-java libpll libpsortb libqes libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libsis-base-java libsis-jhdf5-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtecla libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd lighter loki ltrsift lucy lumpy-sv maffilter mafft mapdamage maq maqview mash maude mauve-aligner mcl medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps microbiomeutil milib minc-tools mindthegap minia miniasm minimap minimap2 mipe mirtop mlv-smile mmseqs2 mosdepth mothur mptp mrbayes mrc mriconvert mricron multiqc mummer murasaki muscle mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neo neobio ngmlr ngs-sdk nibabel nifticlib nim-hts nim-kexpr nim-lapper njplot norsnet norsp nutsqlite odil odin opencfu openslide openslide-python opensurgsim optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picard-tools picopore pigx-rnaseq piler pilercr pilon pinfish pique pirs pixelmed pixelmed-codec pizzly placnet plasmidomics plasmidseeker plast plink plink2 plip poa populations porechop poretools pplacer pp-popularity-contest praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve proteinortho prottest pscan-chip pscan-tfbs psignifit psychopy pvrg-jpeg pybel pybigwig pycoqc pycorrfit pymia pynn pyode pyqi pyranges pyrle pyscanfcs pysurfer python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-cogent python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-duckpy python-easydev python-ete3 python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-intervaltree-bio python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-nanoget python-nanomath python-ncls python-pairix python-parasail python-pauvre python-pbcommand python-pbcore+# python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-scitrack python-screed python-skbio python-spectra python-sqlsoup python-sqt python-stubserver python-tinyalign python-treetime python-wdlparse python-wordcloud python-xopen pyxid pyxnat q2-alignment q2cli q2-cutadapt q2-demux q2-feature-classifier q2-feature-table q2-metadata q2-quality-control q2-quality-filter q2-sample-classifier q2-taxa q2templates q2-types qcat qcumber qiime qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary roguenarok rsem rtax ruby-rgfa runcircos-gui saint salmid salmon sambamba samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrappie scrm scythe seaview seer segemehl seirsplus seqan2 seqkit seqmagick seqprep seqtk seqtools seriation sga shapeit4 shasta sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simka skewer smalt smart-open snakemake snap snap-aligner sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spaln spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco survivor svim sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle# treeviewx trf trim-galore trimmomatic trinculo trinityrnaseq tvc uc-echo umap-learn umis uncalled varna vcfanno vcftools velvet velvetoptimiser virulencefinder vmatch volpack vsearch vt vtk-dicom wham-align wise wtdbg2 xdffileio xmedcon yaggo yaha yanagiba yanosim zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.