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maint_debian-med package set for bullseye/arm64

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package set maint_debian-med in bullseye/arm64
The package set maint_debian-med in bullseye/arm64 consists of 746 packages:
None 34 (4.6%) packages failed to build reproducibly: ncbi-blast+ microbiomeutil bowtie2 emboss gdcm gbrowse libsbml bali-phy loki nanopolish mira librostlab seqan3 python-cogent libzeep python-pauvre+ logol dicom3tools jmodeltest macs mapsembler2 gatb-core raster3d metastudent-data oscar pydicom flexbar kissplice pbseqlib nitime ball treeview mummer mypy
None 14 (1.9%) packages failed to build from source: dnaclust spades filtlong cnvkit lastz ariba conda-package-handling libundead orthanc-dicomweb vg python-parasail tree-puzzle pbcopper nibabel
None None None None 50 (6.7%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: hmmer iqtree sortmerna artemis consensuscore sra-sdk ncbi-vdb obitools insighttoolkit4 bolt-lmm pftools lambda-align2 libstatgen phast fis-gtm bio-eagle jellyfish picard-tools soapdenovo elastix plast rapmap vsearch swarm-cluster infernal circlator soapdenovo2 gmap soapaligner libjloda-java crac drop-seq quorum bioperl-run psortb qcat gubbins barrnap seqsero trinityrnaseq pychopper centrifuge plastimatch camitk minimac4 unicycler skesa salmon ginkgocadx hhsuite
None 648 (86.9%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align ampliconnoise andi anfo aragorn arcp arden artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bambamc bamkit bamtools bandage bart bart-view bbmap bcalm bcftools### beagle beast2-mcmc beast-mcmc bedops bedtools berkeley-express biococoa biojava4-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosig4c++ biosquid biosyntax bio-tradis bitseq blasr bowtie boxshade bppphyview bppsuite brig busco bustools bwa camp canu cassiopee cat-bat cct cdbfasta cd-hit cgview changeo charls chip-seq chromhmm chromimpute ciftilib circos circos-tools clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx codonw coils concavity conservation-code ctdconverter ctdopts ctn ctsim cwltool cyvcf2 daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med deepnano delly dialign dialign-t diamond-aligner dicompyler dicomscope dindel discosnp disulfinder dnapi dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax epcr epigrass estscan examl exonerate fast5 fasta3 fastaq fastdnaml fastlink fastml fastp fastqc fastqtl fasttree fermi-lite ffindex fitgcp flash freebayes freecontact fsa fsm-lite g2 galileo garli gasic gdpc genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread glam2 gnumed-server golang-github-dataence-porter2 grabix graphlan grinder gwama gwyddion harvest-tools hdmf hilive hinge hisat2 hmmer2 hopscotch-map htscodecs htseq htsjdk htslib## hunspell-en-med hyphy idba igdiscover igor igraph imagej indelible invesalius ipig ismrmrd# iva ivar jaligner jam-lib jebl2 jellyfish1 jheatchart kalign kallisto kaptive khmer kineticstools king king-probe kleborate kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lambda-align last-align lefse libace-perl libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbiod libbio-das-lite-perl libbio-db-hts-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-tools-run-remoteblast-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdeflate libdisorder libdivsufsort libedlib libfastahack libfreecontact-perl libgclib libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libics libips4o libjbzip2-java libjung-free-java libkmlframework-java libmems libmialm libminc libmmap-allocator libmurmurhash libmuscle libncl liboptions-java libpal-java libpll libpsortb libqes libquazip librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libseqlib libsis-base-java libsmithwaterman libsort-key-top-perl libssw libtabixpp libtfbs-perl libthread-pool libvcflib libvistaio libxdf libzerg libzerg-perl libzstd ltrsift lucy maffilter mafft mapdamage maq maqview mash maude mauve-aligner mcl medicalterms melting mencal metaphlan2 metaphlan2-data metastudent metastudent-data-2 mhap miaviewit microbegps milib minc-tools mindthegap minia miniasm minimap minimap2 mipe mirtop mlv-smile mmseqs2 mothur mptp mrbayes mriconvert mrs multiqc murasaki muscle mustang nanofilt nanook nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 neobio ngs-sdk njplot norsp nutsqlite odil openslide openslide-python opensurgsim optimir orthanc orthanc-imagej orthanc-mysql orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi pal2nal papyrus paraclu parafly parasail parsinsert parsnp patman patsy pbbam# pbdagcon pbsim pcalendar pdb2pqr perlprimer perm phipack phybin phylip phylonium phyml physamp phyutility phyx piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plink plink2 plip poa populations porechop poretools pp-popularity-contest praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probabel probalign proda prodigal profphd-utils proftmb progressivemauve proteinortho prottest pscan-chip pscan-tfbs psychopy pvrg-jpeg pybel pybigwig pycoqc pymia pyqi pyrle pyscanfcs python3-typed-ast python-avro python-bcbio-gff python-bel-resources python-bids-validator python-biom-format python-biopython python-biotools python-bx python-bz2file python-cgecore python-ciso8601 python-cobra python-colormap python-colormath python-csb python-cutadapt python-deeptools python-deeptoolsintervals python-dendropy python-depinfo python-dicompylercore python-dnaio python-easydev python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-hdmedians python-hl7 python-lzstring python-matplotlib-venn python-mne python-multipletau python-multisplitby python-mypy-extensions python-nanoget python-nanomath python-pbcommand python-pbcore python-pipdeptree python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pypubsub python-pysam python-pyvcf python-questplus python-rdflib-jsonld python-ruffus python-schema-salad python-scitrack python-screed python-skbio python-spectra python-sqlsoup python-sqt python-tinyalign python-treetime python-wordcloud python-xopen pyxid pyxnat q2templates qcumber qrisk2 qsopt-ex qtltools quicktree racon radiant ragout rambo-k rampler rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readseq reapr recan repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary roguenarok routine-update rsem rtax ruby-rgfa runcircos-gui saint samblaster samclip samtools samtools-legacy sbmltoolbox scoary scrm scythe seaview seer segemehl seirsplus seqan seqan2 seqmagick seqprep seqtk seqtools# sga shapeit4 sibsim4 sickle sigma-align sim4 simde skewer smalt smart-open snap snap-aligner sniffles snpomatic snp-sites soapsnp socket++ spaced spaln spdlog sphinxcontrib-autoprogram spoa sprai spread-phy squizz srf srst2 ssake sspace stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surankco sweed swissknife tantan t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tophat-recondition toppred trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trim-galore trimmomatic trinculo tvc uc-echo umis varna vcftools velvet velvetoptimiser virulencefinder vmatch volpack vtk-dicom wise wtdbg2 xmedcon yaggo yaha yanagiba zalign

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.