maint_debian-med package set for stretch/armhf

• All tracked package sets for stretch/armhf

The package set maint_debian-med in stretch/armhf consists of 744 packages:
52 (7.0%) packages failed to build reproducibly: rdp-classifier treeview biojava4-live mothur pycorrfit dicom3tools emboss jam-lib jmodeltest openmolar mira libsbml r-cran-diagnosismed pixelmed mapsembler2 r-cran-fastcluster ncbi-blast+ libzstd r-bioc-rsamtools orthanc ball gbrowse microbiomeutil r-cran-futile.logger bart jebl2 libhpptools python-cogent libpal-java librcsb-core-wrapper metastudent-data orthanc-webviewer mummer macsyfinder python-biopython r-cran-lambda.r logol raster3d phybin pyscanfcs pyqi biojava-live librg-utils-perl maq ncbi-seg norsnet prodigal profisis profnet python-hl7 r-cran-batchjobs r-cran-boolnet
6 (0.8%) packages failed to build from source: figtree htslib snap-aligner ismrmrd# ngs-sdk sortmerna
96 (12.9%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: jellyfish soapdenovo bowtie kissplice gasic parafly consensuscore seqan2 iqtree falcon insighttoolkit4 fis-gtm elastix tophat bwa infernal soapdenovo2 hisat2 hmmer hhsuite swarm-cluster khmer fermi-lite bowtie2 relion vsearch beast-mcmc raxml mrs python-skbio libssw plast rna-star opensurgsim fitgcp libtabixpp samtools python-pysam python-pbcommand blasr pbseqlib python-pbcore pbgenomicconsensus nanopolish pbbarcode pbalign bcftools salmon roary spades poretools reapr htsjdk stacks camitk pbbam surankco circlator fsm-lite artemis ginkgocadx kineticstools iva fastqtl gubbins plastimatch ariba augustus pbh5tools rsem srst2 libvcflib ncbi-vdb sspace giira rapmap sra-sdk bio-eagle hilive metaphlan2 sga htseq crac qtltools pbdagcon trinityrnaseq bioperl-run smalt barrnap beagle bedtools fastqc mhap fastaq python-pymummer picard-tools
590 (79.3%) packages successfully build reproducibly: abacas abyss acedb adapterremoval adun.app aegean aeskulap aevol aghermann alien-hunter alter-sequence-alignment altree amap-align amide ampliconnoise andi anfo aragorn arden artfastqgenerator art-nextgen-simulation-tools autodocksuite autodock-vina axe-demultiplexer bambamc bamtools beast2-mcmc berkeley-express biococoa biomaj bioperl bio-rainbow biosquid bitops boxshade brig cain camp cassiopee cdbfasta cd-hit cgview charls circos circos-tools clearcut clonalframe clustalo clustalw clustalx codonw coils concavity conservation-code ctn ctsim cwltool daligner dascrubber dawg dazzdb dcm2niix dcmtk debian-med dialign dialign-t dichromat dicompyler dicomscope dindel discosnp disulfinder dnaclust dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eigensoft embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer epcr epigrass exonerate fast5 fastdnaml fastlink fastml fasttree fastx-toolkit ffindex filo flexbar freecontact freemedforms-project fsa g2 galileo garli gdcm gdpc genometools gentle gff2aplot gff2ps glam2 gnumed-client gnumed-server graphlan grinder gtable gwama gwyddion harvest-tools hmmer2 hunspell-en-med hyphy idba igraph imagej imagevis3d indelible invesalius ipig jaligner kalign king king-probe kmc kmer kraken lambda-align last-align lefse libace-perl libbio-coordinate-perl libbio-das-lite-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcolt-free-java libctapimkt libdisorder libdivsufsort libfastahack libfreecontact-perl libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libics libjloda-java libjung-free-java libkmlframework-java liblemon libmems libmialm libminc libmuscle libncl liboptions-java libqes libquazip librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librostlab librostlab-blast libsis-base-java libsmithwaterman libsort-key-top-perl libtecla libtfbs-perl libvistaio libzeep libzerg libzerg-perl loki ltrsift macs maffilter mafft mapdamage maqview mash maude mauve-aligner maxflow mcl melting mencal metaphlan2-data metastudent metastudent-data-2 mia mialmpick miaviewit microbegps minc-tools minia miniasm minimap mipe mlv-smile mobyle mobyle-programs mobyle-tutorials mrbayes mriconvert murasaki muscle mustang mypy ncbi-entrez-direct ncbi-tools6 neobio njplot norsp nutsqlite odil opencfu openslide openslide-python orthanc-dicomweb orthanc-imagej orthanc-postgresql papyrus paraclu parsinsert parsnp pbsim pbsuite pcalendar pdb2pqr perlprimer perm permute phipack phylip phyml physamp phyutility piler pirs pixelmed-codec placnet plasmidomics plink plink1.9 plip poa pondus pp-popularity-contest praat prank predictnls prime-phylo primer3 proalign probabel probalign probcons proda profbval profphd-utils proftmb progressivemauve proteinortho prottest pvclust pvrg-jpeg pymia pynast python3-typed-ast python-avro python-biom-format python-burrito python-bz2file python-casmoothing python-clips python-cobra python-csb python-cutadapt python-dendropy python-dictobj python-fitbit python-freecontact python-intervaltree-bio python-matplotlib-venn python-mne python-multipletau python-pyfaidx python-pyvcf python-qcli python-rdflib-jsonld python-ruffus python-schema-salad python-screed python-sqlsoup python-xopen qrisk2 qsopt-ex rambo-k rate4site ray r-bioc-affy r-bioc-affyio r-bioc-altcdfenvs r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationhub r-bioc-aroma.light r-bioc-biobase r-bioc-biocgenerics r-bioc-biocinstaller r-bioc-biocparallel r-bioc-biomart r-bioc-biomformat r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome r-bioc-cummerbund r-bioc-deseq2 r-bioc-dnacopy r-bioc-ebseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-go.db r-bioc-graph r-bioc-gviz r-bioc-hilbertvis r-bioc-hypergraph r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-limma r-bioc-makecdfenv r-bioc-mergeomics r-bioc-metagenomeseq r-bioc-multtest r-bioc-phyloseq r-bioc-preprocesscore r-bioc-qvalue r-bioc-rbgl r-bioc-rtracklayer r-bioc-s4vectors r-bioc-savr r-bioc-shortread r-bioc-snpstats r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector r-cran-ade4 r-cran-adegenet r-cran-adegraphics r-cran-adephylo r-cran-ape r-cran-assertthat r-cran-backports r-cran-bbmisc r-cran-bbmle r-cran-beeswarm r-cran-biasedurn r-cran-bio3d r-cran-blockmodeling r-cran-bold r-cran-brew r-cran-cairo r-cran-catools r-cran-checkmate r-cran-cmprsk r-cran-combinat r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbitest r-cran-deal r-cran-distory r-cran-doparallel r-cran-dosefinding r-cran-dplyr r-cran-ellipse r-cran-epi r-cran-epibasix r-cran-epicalc r-cran-epir r-cran-epitools r-cran-etm r-cran-evaluate r-cran-evd r-cran-fail r-cran-fastmatch r-cran-fields r-cran-filehash r-cran-fitbitscraper r-cran-fitcoach r-cran-futile.options r-cran-future r-cran-g.data r-cran-genabel r-cran-genabel.data r-cran-genetics r-cran-ggplot2 r-cran-globals r-cran-googlevis r-cran-gridbase r-cran-haplo.stats r-cran-hexbin r-cran-htmltools r-cran-htmlwidgets r-cran-httr r-cran-hwriter r-cran-igraph r-cran-irlba r-cran-labeling r-cran-lazyeval r-cran-listenv r-cran-luminescence r-cran-magrittr r-cran-matrixstats r-cran-medadherence r-cran-memoise r-cran-minpack.lm r-cran-munsell r-cran-nmf r-cran-nnls r-cran-openssl r-cran-optparse r-cran-phangorn r-cran-pheatmap r-cran-phylobase r-cran-pkgmaker r-cran-plogr r-cran-plyr r-cran-png r-cran-praise r-cran-prettyunits r-cran-princurve r-cran-progress r-cran-proto r-cran-pscbs r-cran-psy r-cran-qqman r-cran-qtl r-cran-randomforest r-cran-raster r-cran-r.cache r-cran-rcurl r-cran-registry r-cran-rentrez r-cran-reshape r-cran-reshape2 r-cran-rglwidget r-cran-ritis r-cran-rlumshiny r-cran-r.methodss3 r-cran-rncl r-cran-rnexml r-cran-rngtools r-cran-rniftilib r-cran-rocr r-cran-r.oo r-cran-rotl r-cran-rredlist r-cran-rsolnp r-cran-rsqlite r-cran-r.utils r-cran-scales r-cran-scatterd3 r-cran-segmented r-cran-sendmailr r-cran-seqinr r-cran-seroincidence r-cran-shape r-cran-shiny r-cran-shinybs r-cran-solrium r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-surveillance r-cran-taxize r-cran-testit r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tikzdevice r-cran-treescape r-cran-truncnorm r-cran-vegan r-cran-vioplot r-cran-withr r-cran-xml2 rdp-alignment rdp-readseq readseq repeatmasker-recon reprof rnahybrid r-other-mott-happy rtax ruby-rgfa saint samtools-legacy sbmltoolbox scrm scythe seaview seer seqan seqprep seqtk sibsim4 sickle sigma-align sim4 sitplus sleepyhead smrtanalysis snakemake snap sniffles snpomatic snp-sites socket++ sofa-framework spaced spdlog sphinxcontrib-autoprogram sprai spread-phy squizz srf ssake staden staden-io-lib subread+ suitename sumaclust sumatra tantan t-coffee theseus tifffile tigr-glimmer tm-align toppred transdecoder transrate-tools transtermhp tree-puzzle treeviewx trimmomatic uc-echo varna vcftools velvet velvetoptimiser volpack vtk-dicom wise xmedcon yaggo zalign

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.