maint_debian-med package set for forky/amd64

• All tracked package sets for forky/amd64

The package set maint_debian-med in forky/amd64 consists of 910 packages:
56 (6.2%) packages failed to build reproducibly: python-gffutils primer3 spaln+ ants# tree-puzzle libgdf sight seqan2 samtools porechop fis-gtm python-biom-format+ infernal microbiomeutil+ ivar python-pybedtools crac virulencefinder+ dicom3tools libsbml mrtrix3 metastudent-data btllib pinfish twopaco macs seqan3 ncbi-igblast python-biopython ncbi-blast+ bart cyvcf2 filtlong python-trx-python liblemon bmtk biosig psychtoolbox-3 python-pysam parallel igraph vt+ hmmer treeview libgzstream phybin libzeem libslow5lib+ nim-hts+ consensuscore libpll bedtools segemehl shapeit4 emboss nitime
4 (0.4%) packages failed to build from source: picard-tools camitk bart-view unifrac-tools
850 (93.4%) packages successfully build reproducibly: abacas abpoa abyss adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy ball bambamc bamclipper bamkit bamtools bandage barrnap bbhash bbmap bcalm bcftools beads beagle bedops berkeley-express bifrost bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bio-rainbow biosquid biosyntax bio-tradis bio-vcf bitseq blasr bolt-lmm bowtie bowtie2 boxshade bppphyview bppsuite brig busco bustools bwa bwa-mem2 camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cat-bat cct cdbfasta cde cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin cl-pubmed clustalo clustalw clustalx cmtk cnrun codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming connectome-workbench conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cwltool cycle daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope dipy discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar flye freecontact fsa fsm-lite g2 galileo garli gasic gatb-core gatk-bwamem gatk-fermilite gdcm gdpc genometester genomethreader genometools genomicsdb gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htsjdk htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej imbalanced-learn indelible insighttoolkit5 insilicoseq ipig iqtree iqtree3 ismrmrd# itkadaptivedenoising itkgenericlabelinterpolator jaligner jam-lib jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kaptive king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble lambda-align2 last-align lastz libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-seqfeature-perl libbio-db-swissprot-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdicom libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgff libgkarrays libgoby-java libgo-perl libgtextutils libhac-java libhat-trie libhpptools libhttp-nio-java libics libips4o libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzeep libzerg libzerg-perl lighter loki lucy lumpy-sv macsyfinder macsylib maffilter mafft mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 mecat2 medicalterms megadepth megahit melting mencal metaeuk metaphlan metaphlan2-data metastudent-data-2 mhap mia microbegps milib minc-tools minia miniasm minimac4 minimap minimap2 mipe mira mirtop mlv-smile mmlib mmseqs2 mosdepth mothur mptp mrc mricron multiqc mummer muscle muscle3 mustang nanofilt nanolyse nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio neurodebian ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy njplot norsnet norsp ntcard nthash nutsqlite nxtrim obitools odil odin ont-fast5-api openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto prime-phylo prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pydicom pyensembl pyfastx pymia pynn pynwb pyode pyqi pyscanfcs python-acres python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-citeable python-cobra python-cogent python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gtfparse python-hl7 python-hmmlearn python-ihm python-intervaltree-bio python-leidenalg python-loky python-loompy python-mne python-modelcif python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-prefixed python-ptufile python-py2bit python-pyani python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scinexus python-scitrack python-screed python-scverse-misc python-sercol python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon reprof resfinder resfinder-db rnahybrid rna-star roary roguenarok rsem rtax rtfilter ruby-rgfa runcircos-gui saint salmid salmon sambamba samblaster samclip samtools-legacy savvy sbmltoolbox scikit-bio-binaries scrappie scrm scythe seaview seer seirsplus seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seriation setcover sga shasta shovill sibelia sibsim4 sickle sideretro sigma-align sigviewer sim4 simde simka simrisc ska skesa skewer smalt snakemake snap snap-aligner sniffles snpeff snpomatic snpsift snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna sourmash spaced spades spdlog spoa sprai spread-phy sra-sdk srf srst2 ssake sspace ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee theseus thesias tiddit tigr-glimmer tm-align tnseq-transit tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo uc-echo ugene uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree vmatch volpack vsearch vtk-dicom wham-align wise wtdbg2 xdffileio xenium xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.