maint_debian-med package set for forky/amd64

• All tracked package sets for forky/amd64

The package set maint_debian-med in forky/amd64 consists of 901 packages:
83 (9.2%) packages failed to build reproducibly: twopaco phybin vt+ ncbi-blast+ consensuscore pydicom treeview grabix+ libgzstream python-gffutils primer3 nim-hts+ dicom3tools libpll bedtools emboss python-biom-format+ nitime segemehl shapeit4 seer+ tree-puzzle libgdf python-trx-python seqan2 spaln samtools fis-gtm ants# gatb-core freebayes hmmer macs liblemon parallel brian seqan3 python-pysam igraph ivar python-pybedtools python-biopython virulencefinder+ amap-align njplot fsa adapterremoval librandom123 fasttree gff2aplot ecopcr edfbrowser covtobed libncl simde bitseq minimac4 cat-bat libdisorder sumalibs barrnap libslow5lib autodock-vina ismrmrd# metastudent-data murasaki libbio-mage-utils-perl libmaus2 pynwb snpeff cwltool snpsift minc-tools ciftilib crac libsbml deblur+ infernal btllib pinfish microbiomeutil+ mrtrix3 ncbi-igblast
5 (0.6%) packages failed to build from source: unifrac-tools camitk porechop sideretro unicycler
24 (2.7%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: praat salmon htscodecs reprof filtlong python-cobra busco sra-sdk sight libzeep python-intervaltree-bio ghmm abpoa libhac-java jam-lib liboptions-java aevol xmedcon berkeley-express libcolt-free-java bowtie2 cyvcf2 staden-io-lib rdp-readseq
789 (87.6%) packages successfully build reproducibly: abacas abyss adun.app aegean aeonbits-owner aghermann alien-hunter allelecount alter-sequence-alignment altree amide ampliconnoise andi any2fasta aragorn arden argh argtable2 ariba artemis artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart bart-view bbhash bbmap bcalm bcftools beads beagle bedops bifrost bioawk biobambam2 bio-eagle biojava4-live biojava6-live biojava-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosquid biosyntax bio-tradis bio-vcf blasr bolt-lmm bowtie boxshade bppphyview bppsuite brig bustools bwa bwa-mem2 camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cde cd-hit centrifuge cgview changeo charls chip-seq chromhmm chromimpute cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin cl-pubmed clustalo clustalw clustalx cmtk cnrun codonw coils concavity concurrentqueue conservation-code ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle daligner damapper dascrubber dawg dazzdb dcm2niix dcmstack dcmtk debian-med delly density-fitness dextractor dialign dialign-t diamond-aligner dicomscope dipy discosnp disulfinder dnaclust dnapi dnarrange drop-seq dssp dwgsim ea-utils edflib edtsurf eegdev eigensoft elastix elph embassy-domainatrix embassy-domalign embassy-domsearch emboss-explorer e-mem emmax emperor epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastqc fastq-pair fastqtl fermi-lite ffindex figtree fitgcp flash flye freecontact fsm-lite g2 galileo garli gasic gatk-bwamem gatk-fermilite gdcm gdpc genometester genomethreader genometools genomicsdb gentle getdata gfapy gff2ps gffread ggd-utils gifticlib gjh-asl-json glam2 gmap gnumed-client gnumed-server graphlan grinder gsort gubbins gwama harmonypy harvest-tools hdmf hhsuite hisat2 hmmer2 hnswlib hopscotch-map htseq htsjdk htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor igv iitii illustrate imagej indelible insighttoolkit5 insilicoseq invesalius ipig iqtree itkadaptivedenoising itkgenericlabelinterpolator iva jaligner jebl2 jellyfish jellyfish1 jheatchart jmodeltest kalign kaptive king king-probe kissplice kleborate klustakwik kma kmc kmer kmerresistance kraken kraken2 lagan lamarc lamassemble last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libatomic-queue libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-refseq-perl libbio-db-seqfeature-perl libbio-db-swissprot-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbioparser-dev libbio-procedural-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libctapimkt libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgenome libgff libgkarrays libgoby-java libgo-perl libgtextutils libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmmmulti libmurmurhash libmuscle libnewuoa libomp-jonathonl libpal-java libpdb-redo libpj-java libpsortb libqes librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsmithwaterman libsort-key-top-perl libssw libstatgen libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvcflib libvistaio libwfa2 libxdf libzerg libzerg-perl lighter loki lucy macsyfinder macsylib maffilter mafft malt mapdamage maq maqview mash maude mauve-aligner maxflow mcaller mcl mcl14 mecat2 medicalterms megadepth megahit megan-ce melting mencal metaeuk metaphlan metaphlan2-data metastudent metastudent-data-2 mhap mia microbegps milib minia miniasm minimap minimap2 mipe mira mirtop mlv-smile mmlib mmseqs2 mosdepth mothur mptp mrc mricron multiqc mummer muscle muscle3 mustang nanofilt nanolyse nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-seg ncbi-tools6 ncbi-vdb neo neobio neurodebian ngmlr nibabel nifticlib nim-kexpr nim-lapper norsnet norsp ntcard nthash nutsqlite nxtrim obitools odil odin openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paleomix paml papyrus paraclu parafly parallel-fastq-dump parasail parsinsert parsnp paryfor patman patsy pbbam pbcopper pbdagcon pbseqlib pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm pftools phast phipack phylip phylonium phyml physamp phyutility phyx picard-tools picopore piler pilercr pilon pirs pixelmed pixelmed-codec placnet plasmidid plasmidomics plasmidseeker plast plastimatch plink plink1.9 plink2 plip poa populations poretools prank predictnls presto prime-phylo prinseq-lite proalign probabel probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka proteinortho prottest provean pscan-chip pscan-tfbs psignifit psortb pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyfastx pymia pynn pyode pyqi pyranges pyscanfcs python-acres python-awkward python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-bioregistry python-biotools python-bx python-cgecore python-cgelib python-cigar python-cooler python-csb python-curies python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-ete3 python-fitbit python-freecontact python-geneimpacts python-gtfparse python-hl7 python-hmmlearn python-ihm python-iow python-leidenalg python-modelcif python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-prefixed python-py2bit python-pyani python-pycosat python-pyfaidx python-pymummer python-pyspoa python-pyvcf python-questplus python-scitrack python-screed python-sercol python-skbio python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2templates qcat qrisk2 qsopt-ex qtltools quicktree quitcount quorum racon radiant ragout rambo-k rampler rapmap raster3d rate4site raxml ray rdp-alignment rdp-classifier readerwriterqueue readseq readucks reapr recan relacy repeatmasker-recon resfinder resfinder-db rnahybrid rna-star roary rockhopper roguenarok rsem rtax rtfilter ruby-rgfa runcircos-gui saint salmid sambamba samblaster samclip samtools-legacy savvy sbmltoolbox scoary scrappie scrm scythe seaview seirsplus seqan-needle seqan-raptor seqkit seqmagick seqprep seqsero seqtk seriation setcover shasta shovill sibelia sibsim4 sickle sigma-align sim4 simka simrisc ska skesa skewer smalt snap snap-aligner sniffles snippy snpomatic snp-sites soapaligner soapdenovo soapdenovo2 soapsnp socket++ sorted-nearest sortmerna spaced spades spdlog spoa sprai spread-phy srf srst2 ssake sspace ssshtest stacks staden stringtie subarch-select subread suitename sumaclust sumatra surankco surpyvor survivor svim swarm-cluster sweed swissknife tantan tao-config tao-json t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transrate-tools transtermhp treeviewx trf trim-galore trimmomatic trinculo uc-echo ugene uncalled unifrac unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree vmatch volpack vsearch vtk-dicom wham-align wise wtdbg2 xdffileio xenium xxsds-dynamic yaggo yaha yanagiba yanosim

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A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.