maint_debian-med package set for trixie/i386

• All tracked package sets for trixie/i386

The package set maint_debian-med in trixie/i386 consists of 847 packages:
31 (3.7%) packages failed to build reproducibly: liblemon macsyfinder dicom3tools hmmer biojava-live porechop gbrowse twopaco libpll pixelmed jebl2 iqtree ncbi-blast+ segemehl metastudent-data parallel shapeit4 biojava6-live filtlong librostlab mmlib dcmtk odil consensuscore dipy ffindex gdcm libsbml treeview igraph python-pysam
27 (3.2%) packages failed to build from source: tao-json gjh-asl-json nim-hts cwltool seqan-raptor bbhash unifrac-tools ugene python-mne pynn abpoa python-biom-format flye bifrost gatk-bwamem libbioparser-dev pyranges python-pbcore pydicom q2cliP qrisk2 probabel btllib scrm ncbi-igblast seqan-needle seqan3
79 (9.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: elastix soapaligner soapdenovo2 xenium lambda-align2 libstatgen mrtrix3 salmon pftools mmseqs2 mapsembler2 megahit mecat2 obitools bmtk jellyfish1 fis-gtm kma libvcflib insighttoolkit5 ntcard abyss gdpc minia discosnp mash wtdbg2 sra-sdk snap-aligner simka bcalm kissplice gatb-core mindthegap vsearch shasta swarm-cluster bowtie rna-star pbcopper diamond-aligner q2-phylogeny python-skbio spades spaln khmer ncbi-vdb kallisto trinityrnaseq soapdenovo quorum q2-types jellyfish q2-taxa q2-emperor q2-metadata psortb sight q2-quality-filter pigx-rnaseq q2-feature-table q2-alignment q2-cutadapt libatomic-queue libmmmulti artemis srst2 seqsero kleborate camitk pizzly qcumber gasic metaphlan ariba fastqc libgoby-java drop-seq paleomix
710 (83.8%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools barrnap bart bart-view bbmap bcftools beads beast2-mcmc bedops bedtools biobambam2 biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user bioperl bioperl-run biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade bppphyview bppsuite brian brig busco bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb debian-med delly dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange dssp ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft emboss-explorer e-mem emmax epcr estscan examl exonerate fasta3 fastani fastaq fastdnaml fastlink fastml fastq-pair fastqtl fasttree fermi-lite figtree fitgcp flash freecontact fsa g2 galileo garli gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm glam2 gmap gnumed-client gnumed-server grabix graphlan gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils igor illustrate imagej imbalanced-learn indelible infernal insilicoseq ipig ismrmrd# iva ivar jaligner jam-lib jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview maude mauve-aligner mcaller mcl mcl14 medicalterms megan-ce melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap microbegps microbiomeutil milib minc-tools miniasm minimap minimap2 mipe mira mirtop mosdepth mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy njplot norsnet norsp nutsqlite nxtrim odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsim pdb2pqr peptidebuilder perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pycorrfit pyensembl pyfastx pynwb pyode pyqi pyscanfcs pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-parasail python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-trx-python python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qsopt-ex qtltools quicktree racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scythe seaview seirsplus seqan2 seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.