maint_debian-med package set for unstable/i386

• All tracked package sets for unstable/i386

The package set maint_debian-med in unstable/i386 consists of 981 packages:
32 (3.3%) packages failed to build reproducibly: librostlab mmlib macsyfinder dcmtk parallel consensuscore biojava-live liblemon q2cliP porechop cwltool gbrowse jebl2 ncbi-blast+ pixelmed metastudent-data iqtree libpll mia segemehl ball libsbml biojava6-live hmmer shapeit4 filtlong twopaco treeview gdcm igraph python-pysam dicom3tools
38 (3.9%) packages failed to build from source: pyranges libbioparser-dev python-pbcore scrm gatk-bwamem python-awkward nim-hts ncbi-seg igdiscover tao-json mlv-smile gjh-asl-json heudiconv seqan-raptor python-anndata btllib ugene python-mne dcmstack seqan3 acedb bbhash unifrac-tools nitime ncbi-igblast bustools seqan-needle pydicom dipy anfo probabel intake bifrost abpoa python-biom-format flye nibabel nipype
150 (15.3%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: pftools fis-gtm ncbi-vdb soapaligner soapdenovo vg kallisto mapsembler2 elastix lambda-align2 soapdenovo2 obitools mrtrix3 xenium salmon libstatgen bmtk canu mmseqs2 mecat2 megahit jellyfish1 kma libvcflib insighttoolkit5 gdpc ntcard wtdbg2 sra-sdk vsearch swarm-cluster shasta abyss mash minia trinityrnaseq discosnp drop-seq pilon q2-alignment circlator sight embassy-domsearch camitk snippy sspace kraken smrtanalysis fastqc resfinder-db ariba picard-tools embassy-domalign freebayes crac pbdagcon qcumber psortb unicycler embassy-domainatrix fsm-lite pbbam surankco proteinortho seqsero gasic python-ete3 artemis paleomix q2-feature-classifier blasr quorum kleborate beast-mcmc nthash q2-quality-filter q2-cutadapt q2-types rapmap q2-demux plastimatch kmerresistance shovill rsem q2-feature-table libatomic-queue pizzly parallel-fastq-dump q2-quality-control sepp q2-metadata rockhopper libmmmulti king plasmidid pbseqlib emboss sambamba fastp q2-dada2 q2-diversity-lib igv beagle centrifuge chromhmm snpsift metaphlan minimac4 q2-fragment-insertion emperor skesa snpeff q2-emperor tipp pigx-rnaseq metaeuk libwfa2 jellyfish srst2 bowtie2 genomicsdb q2-taxa unifrac umap-learn deblur python-array-api-compat bcalm gatb-core mindthegap simka kissplice python-loompy praat libgoby-java snap-aligner htsjdk bowtie python-skbio pbcopper python-cooler python-cogent spades q2-phylogeny cat-bat python-iow spaln diamond-aligner rna-star khmer pplacer
761 (77.6%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount alter-sequence-alignment altree amap-align amide ampliconnoise andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage barrnap bart bart-view bbmap bcftools beads beast2-mcmc bedops bedtools berkeley-express bioawk biobambam2 bio-eagle biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bolt-lmm boxshade bppphyview bppsuite brian brig busco bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib cif-tools circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix debian-med delly density-fitness dextractor dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr epigrass estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastq-pair fastqtl fasttree fermi-lite ffindex figtree fitgcp flash flexbar freecontact fsa g2 galileo garli gatk-fermilite gemma genometester genomethreader genometools gentle getdata gfapy gff2aplot gff2ps gffread ggd-utils ghmm gifticlib glam2 gmap gnumed-client gnumed-server grabix graphlan grinder gsort gubbins gwama gwyddion harmonypy harvest-tools hdmf hhsuite hilive hinge hisat2 hmmer2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba idseq-bench igor iitii illustrate imagej imbalanced-learn indelible infernal insilicoseq invesalius ipig ismrmrd# iva ivar jaligner jam-lib jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmc kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libamplsolver libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbio-mage-utils-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libla4j-java libleidenalg libmaus2 libmcfp libmems libmialm libminc libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpdb-redo libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librg-utils-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtecla libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg libzerg-perl lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview maude mauve-aligner mcaller mcl mcl14 medicalterms megadepth megan-ce melting mencal metabat metaphlan2-data metastudent metastudent-data-2 mhap mialmpick microbegps microbiomeutil milib minc-tools miniasm minimap minimap2 mipe mira mirtop mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanostat nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 neo neobio ngmlr nifticlib nim-kexpr nim-lapper nipy njplot norsnet norsp nutsqlite nxtrim odil odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-python orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsinsert parsnp paryfor patman patsy pbsim pbsuite pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations poretools prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet profphd-utils proftmb progressivemauve prokka propka prottest provean pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pychopper pycoqc pycorrfit pyensembl pyfastx pymia pynn pynwb pyode pyqi pyscanfcs pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptools python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-epimodels python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-parasail python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-trx-python python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq readucks reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok routine-update rtax ruby-rgfa runcircos-gui saint salmid samblaster samclip samtools samtools-legacy savvy sbmltoolbox scoary scrappie scythe seaview seer seirsplus seqan2 seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sibsim4 sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest sortmerna spaced spdlog spoa sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subarch-select subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config t-coffee terraphast theseus thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize trace2dbest tracetuner transdecoder transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt vtk-dicom wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.