maint_debian-med package set for trixie/armhf

• All tracked package sets for trixie/armhf

The package set maint_debian-med in trixie/armhf consists of 906 packages:
30 (3.3%) packages failed to build reproducibly: segemehl biojava-live dicom3tools gbrowse twopaco liblemon libpll python-pysam jebl2 ncbi-blast+ hmmer libamplsolver parallel shapeit4 metastudent-data filtlong cwltool python-trx-python librostlab mhap ffindex dcmtk pyscanfcs mmlib pycorrfit gdcm libla4j-java alter-sequence-alignment odil treeview
35 (3.9%) packages failed to build from source: gjh-asl-json libmaus2 biojava6-live libbioparser-dev python-pbcore bbhash q2cliP unifrac-tools abpoa bifrost python-biom-format flye hmmer2 libtecla maude parsinsert iitii ismrmrd# nim-hts python-parasail python-mne btllib ugene seqan3 seqan-raptor pydicom libminc libsbml ncbi-igblast ivar pynn bustools igraph seqan-needle kmc
145 (16.0%) packages are either in depwait state, blacklisted, not for us, or cannot be downloaded: seqan2 fis-gtm bio-eagle metabat probabel ncbi-vdb soapaligner lambda-align2 jellyfish1 theseus kma libvcflib insighttoolkit5 subarch-select ntcard minia abyss gdpc discosnp mash snap-aligner mindthegap gatb-core salmon mrtrix3 simka bcalm kissplice bolt-lmm bowtie pbcopper spades diamond-aligner rna-star spaln q2-phylogeny khmer python-skbio obitools bmtk macsyfinder libstatgen python-cooler trinityrnaseq kallisto sortmerna infernal soapdenovo2 xenium mapsembler2 mmseqs2 soapdenovo pftools megahit mecat2 pyranges wtdbg2 sra-sdk paleomix fastqc htsjdk transdecoder unifrac q2-diversity-lib centrifuge fsm-lite plastimatch sspace barrnap crac rsem pbdagcon quorum kmerresistance jellyfish surankco resfinder-db pbbam proteinortho king pilon picard-tools drop-seq cat-bat nthash unicycler libgoby-java kraken plasmidid skesa shovill biobambam2 beagle rapmap python-iow rockhopper igv sambamba chromhmm python-ete3 minimac4 embassy-domalign snpsift emboss embassy-domainatrix embassy-domsearch pigx-rnaseq bowtie2 parallel-fastq-dump dipy emperor snpeff pbseqlib q2-quality-filter q2-fragment-insertion libwfa2 q2-alignment metaeuk q2-types q2-metadata q2-taxa q2-cutadapt q2-emperor q2-feature-table consensuscore psortb libatomic-queue camitk libmmmulti pizzly busco srst2 gasic kleborate seqsero gubbins ariba qcumber metaphlan sight shasta swarm-cluster vsearch artemis elastix
696 (76.8%) packages successfully build reproducibly: abacas adapterremoval adun.app aegean aeonbits-owner aevol aghermann alien-hunter allelecount altree amap-align amide andi any2fasta aragorn arden argh argtable2 artfastqgenerator art-nextgen-simulation-tools assembly-stats assemblytics ataqv atropos augur augustus autodocksuite autodock-vina axe-demultiplexer baitfisher bali-phy bambamc bamclipper bamkit bamtools bandage bart bart-view bbmap bcftools beads beast2-mcmc beast-mcmc bedops bedtools bioawk biojava4-live biomaj3 biomaj3-cli biomaj3-core biomaj3-daemon biomaj3-download biomaj3-process biomaj3-user biomaj3-zipkin bioperl bioperl-run bio-rainbow biosig biosquid biosyntax bio-tradis bio-vcf bitseq bppphyview bppsuite brian brig bwa camp capsule-maven-nextflow capsule-nextflow cassiopee castxml cct cdbfasta cd-hit cgview changeo charls chip-seq chromimpute ciftilib circos circos-tools civetweb clearcut clonalframe clonalframeml clonalorigin clustalo clustalw clustalx cmtk cnvkit codonw coils concavity concurrentqueue conda-package-handling conda-package-streaming conservation-code covtobed ctdconverter ctdopts ctffind ctn ctsim cutesv cwlformat cwltest cycle cyvcf2 daligner damapper dascrubber dawg dazzdb dcm2niix debian-med delly dialign dialign-t dicomscope disulfinder dnaclust dnapi dnarrange drmaa dssp dwgsim ea-utils ecopcr edfbrowser edflib edtsurf eegdev eigensoft elph emboss-explorer e-mem emmax epcr estscan examl exonerate fast5 fasta3 fastani fastaq fastdnaml fastlink fastml fastp fastq-pair fastqtl fasttree fermi-lite figtree flash flexbar freecontact fsa g2 galileo garli gatk-bwamem gatk-fermilite gemma genometester genomethreader genometools gentle gfapy gff2aplot gff2ps gffread ggd-utils ghmm glam2 gmap gnumed-client gnumed-server grabix graphlan gsort gwama gwyddion harvest-tools hdmf hhsuite hinge hisat2 hnswlib hopscotch-map htscodecs htseq htslib hts-nim-tools hunspell-en-med hyphy icb-utils idba igor illustrate imagej imbalanced-learn indelible insilicoseq ipig iva jaligner jam-lib jheatchart jmodeltest kalign kaptive kineticstools king-probe klustakwik kmer kraken2 lagan lamarc lamassemble lambda-align last-align lastz lefse libace-perl libargparse libargs libatomicbitvector libbigwig libbio-alignio-stockholm-perl libbio-cluster-perl libbio-coordinate-perl libbio-das-lite-perl libbio-db-biofetch-perl libbio-db-embl-perl libbio-db-hts-perl libbio-db-ncbihelper-perl libbio-db-seqfeature-perl libbio-featureio-perl libbio-graphics-perl libbio-mage-perl libbiosoup-dev libbio-tools-run-remoteblast-perl libbio-variation-perl libbitarray libbpp-core libbpp-phyl libbpp-phyl-omics libbpp-popgen libbpp-qt libbpp-raa libbpp-seq libbpp-seq-omics libcereal libchado-perl libcifpp libcolt-free-java libctapimkt libdeflate libdisorder libdistlib-java libdivsufsort libedlib libfastahack libflathashmap libfreecontact-perl libgclib libgdf libgenome libgenome-model-tools-music-perl libgenome-perl libgff libgkarrays libgo-perl libgtextutils libgzstream libhac-java libhat-trie libhmsbeagle libhpptools libhttp-nio-java libics libips4o libjloda-java libjung-free-java libkmlframework-java libleidenalg libmcfp libmems libmialm libmjson-java libmmap-allocator libmurmurhash libmuscle libncl libnewuoa libomp-jonathonl liboptions-java libpal-java libpj-java libpsortb libqes librandom123 librcsb-core-wrapper librdp-taxonomy-tree-java librg-blast-parser-perl librg-exception-perl librostlab-blast libsecrecy libseqlib libshrinkwrap libsis-base-java libsis-jhdf5-java libslow5lib libsmithwaterman libsort-key-top-perl libssw libstreamvbyte libtabixpp libtfbs-perl libthread-pool libvbz-hdf-plugin libvistaio libxdf libzeep libzerg lighter loki ltrsift lucy lumpy-sv macs maffilter mafft malt mapdamage maq maqview mauve-aligner mcaller mcl medicalterms megadepth megan-ce melting mencal metaphlan2-data metastudent metastudent-data-2 microbegps microbiomeutil milib minc-tools miniasm minimap minimap2 mipe mira mirtop mosdepth mothur mptp mrbayes mrc mricron multiqc mummer murasaki muscle muscle3 mustang nanofilt nanolyse nanook nanopolish nanosv ncbi-acc-download ncbi-entrez-direct ncbi-tools6 neo neobio ngmlr nibabel nifticlib nim-kexpr nim-lapper nipy njplot norsp nutsqlite nxtrim odin ont-fast5-api opencfu openslide openslide-python optimir orthanc orthanc-dicomweb orthanc-gdcm orthanc-imagej orthanc-mysql orthanc-neuro orthanc-postgresql orthanc-webviewer orthanc-wsi oscar pairtools pal2nal paml papyrus paraclu parafly parasail parsnp paryfor patman patsy pbsim pcalendar pdb2pqr peptidebuilder perlprimer perm phast phipack phybin phylip phylonium phyml physamp phyutility phyx picopore piler pilercr pinfish pique pirs pixelmed pixelmed-codec placnet plasmidomics plasmidseeker plast plink plink1.9 plink2 plip poa populations porechop poretools praat prank predictnls presto prime-phylo primer3 prinseq-lite proalign probalign probcons proda prodigal profbval profisis profnet proftmb prokka propka prottest pscan-chip pscan-tfbs psignifit psychopy pullseq pvrg-jpeg pybel pybigwig pycoqc pyensembl pyfastx pynwb pyode pyqi pysurfer python-alignlib python-bcbio-gff python-bel-resources python-bids-validator python-bioblend python-bioframe python-biopython python-biotools python-bx python-cgecore python-cgelib python-cigar python-cobra python-csb python-cutadapt python-cykhash python-datacache python-deeptoolsintervals python-dendropy python-dicompylercore python-dnaio python-etelemetry python-fitbit python-freecontact python-geneimpacts python-gffutils python-gtfparse python-hl7 python-hmmlearn python-intervaltree-bio python-leidenalg python-nanoget python-nanomath python-pairix python-pangolearn python-pauvre python-pbcommand python-prefixed python-py2bit python-pyani python-pybedtools python-pycosat python-pyfaidx python-pyflow python-pymummer python-pyspoa python-pyvcf python-questplus python-ruffus python-scitrack python-screed python-sqt python-tinyalign python-treetime python-wdlparse pyxid pyxnat q2-sample-classifier q2templates qcat qiime qrisk2 qsopt-ex qtltools quicktree quitcount racon radiant ragout rambo-k rampler raster3d rate4site raxml ray rdp-alignment rdp-classifier rdp-readseq readerwriterqueue readseq reapr recan relacy relion repeatmasker-recon reprof resfinder rnahybrid roary roguenarok rtax ruby-rgfa runcircos-gui saint salmid samblaster samtools samtools-legacy savvy sbmltoolbox scoary scrappie scrm seaview seer seirsplus seqkit seqmagick seqprep seqtk seqtools seriation setcover sga sibelia sickle sigma-align sigviewer sim4 simde simrisc ska skewer smalt snakemake snap sniffles snpomatic snp-sites soapsnp socket++ sorted-nearest spaced spdlog sprai spread-phy squizz srf ssake ssshtest stacks staden staden-io-lib stringtie subread suitename sumaclust sumalibs sumatra surpyvor survivor svim sweed swissknife tantan tao-config tao-json t-coffee terraphast thesias tiddit tigr-glimmer tm-align tnseq-transit toil tombo toml11 tophat-recondition toppred tortoize tracetuner transrate-tools transtermhp tree-puzzle treeviewx trf trim-galore trimmomatic trinculo tvc uc-echo umis uncalled unikmer varna vcfanno vcftools velvet velvetoptimiser veryfasttree virulencefinder vmatch volpack vt wham-align wise xdffileio xmedcon xpore xxsds-dynamic yaggo yaha yanagiba yanosim

A package name displayed with a bold font is an indication that this package has a note. Visited packages are linked in green, those which have not been visited are linked in blue.
A # sign after the name of a package indicates that a bug is filed against it. Likewise, a + sign indicates there is a patch available, a P means a pending bug while # indicates a closed bug. In cases of several bugs, the symbol is repeated.