Mon Oct 28 18:20:45 UTC 2024 I: starting to build tortoize/unstable/i386 on jenkins on '2024-10-28 18:20' Mon Oct 28 18:20:45 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/46075/console.log Mon Oct 28 18:20:45 UTC 2024 I: Downloading source for unstable/tortoize=2.0.13-1 --2024-10-28 18:20:45-- http://deb.debian.org/debian/pool/main/t/tortoize/tortoize_2.0.13-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2122 (2.1K) [text/prs.lines.tag] Saving to: ‘tortoize_2.0.13-1.dsc’ 0K .. 100% 197M=0s 2024-10-28 18:20:45 (197 MB/s) - ‘tortoize_2.0.13-1.dsc’ saved [2122/2122] Mon Oct 28 18:20:45 UTC 2024 I: tortoize_2.0.13-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tortoize Binary: tortoize Architecture: any Version: 2.0.13-1 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/tortoize Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/tortoize Vcs-Git: https://salsa.debian.org/med-team/tortoize.git Testsuite: autopkgtest Testsuite-Triggers: libcifpp-dev Build-Depends: debhelper-compat (= 13), libcifpp-dev, zlib1g-dev, libmcfp-dev, libboost-dev, libboost-regex-dev, cmake, libzeep-dev, mrc Package-List: tortoize deb science optional arch=any Checksums-Sha1: c68c010c6419d182e1d64db90d74e0973bed7bf0 313885 tortoize_2.0.13.orig.tar.gz 0c984d0c39007b9f0c89076ca79ddc45d166abe2 24668 tortoize_2.0.13-1.debian.tar.xz Checksums-Sha256: cd8ce4422e5e2e975732176101d826a9117dd75f53c7cfe898c3ac78be0a04a5 313885 tortoize_2.0.13.orig.tar.gz 298f34335f3a919460cc33e85da44a1baa0209f05cb3680cb51869f3259ceb9d 24668 tortoize_2.0.13-1.debian.tar.xz Files: d4aeeb2e65870b4c32b2bbfa831bc55d 313885 tortoize_2.0.13.orig.tar.gz c7a0056891a66ac5cc322604f821e664 24668 tortoize_2.0.13-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmcfYawWHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzmifD/96yNPj4palykXxTsH8Qf3Qr5gX ooSNP6gbyWZPwbigMF3NssHT4WilQ/f1H4PJSIbu1enrdgR/Bq16Q9luCobRHzm2 +ZRClglmqChDkci4JeX1cR5xvm9XsiMwFDDKaNAgGjh6UZ7YqbR1Yf0uU6Y0MnG/ ZcZ7d8tNWshUHjPL1QHhKJvMXpB9k2zYhDIrbKJmraTWtxFuGAT9WWbRqBX3LEWf QHCczctKZCHmRC9qpClj3GZwQvCVRiBtRCooiF71F4hKMxaBltB4Olr1tEpodwE+ mgLtb6su2+xq9IwUwZ5gqh7V0AZpYrBHxSpy3+LnTlj2dp8IboaxOAZq3FTuGm35 CNvJljyAzvbKxRImilSRZ4ZLTUAluX0CjHld5vy95n7stmDBxZyj/ePzovTBugMh HpC00J81J2HvIxKo2Cn8094Fd9U60Zlow2Rr6NXFFzwqh1qWFiqePMRjCMnpUUhy b8yDSSKcbPpBC5BH3zvTGvpfLW+mZzTZniKr51fTYhV6UvxeQMRbMNDAtz7U5Dc6 AUpdko2njtFyYnD+sbX8scldqnaw7g5nDSszI5XBkBQnChD9vw3mIEsWx9UvVdLo Mx2G2GdATEYCeZPatEezUcf6uIFABcS2lUiDvA5LjG4yqhmEYaPWxnULCjqM+5aC 9+JvAgNA/+SLiT9Rqw== =v6B3 -----END PGP SIGNATURE----- Mon Oct 28 18:20:45 UTC 2024 I: Checking whether the package is not for us Mon Oct 28 18:20:45 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Mon Oct 28 18:20:45 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Mon Oct 28 18:21:50 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 30 12:43:45 -12 2025 I: pbuilder-time-stamp: 1764549825 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tortoize_2.0.13-1.dsc] I: copying [./tortoize_2.0.13.orig.tar.gz] I: copying [./tortoize_2.0.13-1.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Oct 28 10:04:28 2024 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./tortoize_2.0.13-1.dsc: no acceptable signature found dpkg-source: info: extracting tortoize in tortoize-2.0.13 dpkg-source: info: unpacking tortoize_2.0.13.orig.tar.gz dpkg-source: info: unpacking tortoize_2.0.13-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying include-dssp.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15650/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='8752a13312e54d83af4fa6e406513a8e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15650' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1uM166CD/pbuilderrc_yBL8 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1uM166CD/b1 --logfile b1/build.log tortoize_2.0.13-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/15650/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcifpp-dev, zlib1g-dev, libmcfp-dev, libboost-dev, libboost-regex-dev, cmake, libzeep-dev, mrc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19933 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev; however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libmcfp-dev; however: Package libmcfp-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libzeep-dev; however: Package libzeep-dev is not installed. pbuilder-satisfydepends-dummy depends on mrc; however: Package mrc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcifpp-data{a} libcifpp-dev{a} libcifpp7{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu-dev{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libmcfp-dev{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libzeep-dev{a} libzeep5.1{a} m4{a} man-db{a} mrc{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 66.7 MB of archives. After unpacking 395 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-6 [876 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 cmake-data all 3.30.5-1 [2223 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libarchive13t64 i386 3.7.4-1 [390 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 27 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.10.1-2 [391 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.3-2 [107 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libjsoncpp26 i386 1.9.6-2 [90.0 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 librhash1 i386 1.4.5-1 [144 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.48.0-6 [157 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 cmake i386 3.30.5-1 [12.5 MB] Get: 42 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-5 [216 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libboost1.83-dev i386 1.83.0-3.2 [10.6 MB] Get: 56 http://deb.debian.org/debian unstable/main i386 libboost-date-time1.83.0 i386 1.83.0-3.2 [230 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libboost-serialization1.83.0 i386 1.83.0-3.2 [343 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libboost-serialization1.83-dev i386 1.83.0-3.2 [386 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libboost-date-time1.83-dev i386 1.83.0-3.2 [239 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libboost-date-time-dev i386 1.83.0.2+b2 [3596 B] Get: 61 http://deb.debian.org/debian unstable/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B] Get: 62 http://deb.debian.org/debian unstable/main i386 libboost-program-options1.83.0 i386 1.83.0-3.2 [360 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libboost-program-options1.83-dev i386 1.83.0-3.2 [390 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libboost-program-options-dev i386 1.83.0.2+b2 [3616 B] Get: 65 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83.0 i386 1.83.0-3.2 [329 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-5 [10.6 MB] Get: 67 http://deb.debian.org/debian unstable/main i386 libboost-regex1.83-dev i386 1.83.0-3.2 [347 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libboost-regex-dev i386 1.83.0.2+b2 [3872 B] Get: 69 http://deb.debian.org/debian unstable/main i386 libboost-system1.83.0 i386 1.83.0-3.2 [230 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libboost-system1.83-dev i386 1.83.0-3.2 [231 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libboost-system-dev i386 1.83.0.2+b2 [3740 B] Get: 72 http://deb.debian.org/debian unstable/main i386 libcifpp-data all 7.0.7-2 [484 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libcifpp7 i386 7.0.7-2 [1074 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libcifpp-dev i386 7.0.7-2 [111 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libmcfp-dev i386 1.2.4-1 [16.0 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libzeep5.1 i386 5.1.8-1+b1 [677 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 pkg-config i386 1.8.1-4 [14.0 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libzeep-dev i386 5.1.8-1+b1 [78.3 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 mrc i386 1.3.10-1 [54.3 kB] Fetched 66.7 MB in 1s (52.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19933 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_i386.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/tortoize-2.0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tortoize_2.0.13-1_source.changes dpkg-buildpackage: info: source package tortoize dpkg-buildpackage: info: source version 2.0.13-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.13' dh_auto_configure -- -DBUILD_SHARED_LIBS=ON cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_SHARED_LIBS=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for C++ include filesystem -- Looking for C++ include filesystem - found -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED -- Performing Test CXX_FILESYSTEM_NO_LINK_NEEDED - Success -- Git hash not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.3.1") CMake Warning (dev) at /usr/share/cmake-3.30/Modules/CMakeFindDependencyMacro.cmake:76 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/i386-linux-gnu/cmake/zeep/zeepConfig.cmake:38 (find_dependency) CMakeLists.txt:119 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/i386-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70.0") found components: system date_time regex -- Configuring done (2.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.13' dh_auto_build cd obj-i686-linux-gnu && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/tortoize-2.0.13 -B/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E 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/build/reproducible-path/tortoize-2.0.13 /build/reproducible-path/tortoize-2.0.13 /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/CMakeFiles/mrc-depends-file_tortoize.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' cd /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.13 /build/reproducible-path/tortoize-2.0.13 /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/CMakeFiles/mrc-depends-file_tortoize-unit-test.dir/DependInfo.cmake "--color=" [ 16%] Generating tortoize-unit-test_rsrc.obj [ 16%] Generating tortoize_rsrc.obj /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/tortoize_rsrc.obj /build/reproducible-path/tortoize-2.0.13/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.13/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/tortoize-unit-test_rsrc.obj /build/reproducible-path/tortoize-2.0.13/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.13/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' make -f CMakeFiles/mrc-depends-file_tortoize-unit-test.dir/build.make CMakeFiles/mrc-depends-file_tortoize-unit-test.dir/build make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' make -f CMakeFiles/mrc-depends-file_tortoize.dir/build.make CMakeFiles/mrc-depends-file_tortoize.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/tortoize-unit-test_rsrc.obj -d /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/tortoize-unit-test_rsrc.d /build/reproducible-path/tortoize-2.0.13/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.13/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' /usr/bin/mrc -o /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/tortoize_rsrc.obj -d /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/tortoize_rsrc.d /build/reproducible-path/tortoize-2.0.13/rsrc/rama-data.bin /build/reproducible-path/tortoize-2.0.13/rsrc/torsion-data.bin /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic /usr/share/libcifpp/mmcif_ma.dic make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' [ 16%] Built target mrc-depends-file_tortoize-unit-test [ 16%] Built target mrc-depends-file_tortoize cd /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/tortoize-2.0.13 /build/reproducible-path/tortoize-2.0.13 /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/CMakeFiles/tortoize-unit-test.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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Consolidate compiler generated dependencies of target tortoize-unit-test make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' make -f CMakeFiles/tortoize-unit-test.dir/build.make CMakeFiles/tortoize-unit-test.dir/build make[3]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' Dependencies file "tortoize_rsrc.d" is newer than depends file "/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/CMakeFiles/tortoize.dir/compiler_depend.internal". 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CMakeFiles/tortoize-unit-test.dir/src/dssp.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/src/dssp.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/src/dssp.cpp.o -c /build/reproducible-path/tortoize-2.0.13/src/dssp.cpp /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.13/src -I/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize-unit-test.dir/src/tortoize.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/src/tortoize.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/src/tortoize.cpp.o -c 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-DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -MF CMakeFiles/tortoize.dir/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize.dir/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.13/src/dssp-io.cpp /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.13/src -I/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize-unit-test.dir/src/dssp-io.cpp.o -MF CMakeFiles/tortoize-unit-test.dir/src/dssp-io.cpp.o.d -o CMakeFiles/tortoize-unit-test.dir/src/dssp-io.cpp.o -c /build/reproducible-path/tortoize-2.0.13/src/dssp-io.cpp [ 75%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize.cpp.o -c /build/reproducible-path/tortoize-2.0.13/src/tortoize.cpp [ 83%] Building CXX object CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DNOMINMAX=1 -DUSE_RSRC -I/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -MF CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o.d -o CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o -c /build/reproducible-path/tortoize-2.0.13/src/tortoize-main.cpp [ 91%] Linking CXX executable tortoize /usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now CMakeFiles/tortoize.dir/src/dssp.cpp.o "CMakeFiles/tortoize.dir/src/dssp-io.cpp.o" CMakeFiles/tortoize.dir/src/tortoize.cpp.o "CMakeFiles/tortoize.dir/src/tortoize-main.cpp.o" tortoize_rsrc.obj -o tortoize /usr/lib/i386-linux-gnu/libcifpp.so.7.0.7 /usr/lib/i386-linux-gnu/libzeep.so.5.1.8 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_date_time.so.1.83.0 /usr/bin/ld: warning: tortoize_rsrc.obj: missing .note.GNU-stack section implies executable stack /usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' [ 91%] Built target tortoize [100%] Linking CXX executable tortoize-unit-test /usr/bin/cmake -E cmake_link_script CMakeFiles/tortoize-unit-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/tortoize-2.0.13=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/tortoize-unit-test.dir/src/dssp.cpp.o" "CMakeFiles/tortoize-unit-test.dir/src/dssp-io.cpp.o" "CMakeFiles/tortoize-unit-test.dir/test/tortoize-unit-test.cpp.o" "CMakeFiles/tortoize-unit-test.dir/src/tortoize.cpp.o" "tortoize-unit-test_rsrc.obj" -o tortoize-unit-test /usr/lib/i386-linux-gnu/libcifpp.so.7.0.7 /usr/lib/i386-linux-gnu/libzeep.so.5.1.8 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/i386-linux-gnu/libboost_date_time.so.1.83.0 /usr/bin/ld: warning: tortoize-unit-test_rsrc.obj: missing .note.GNU-stack section implies executable stack /usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker make[3]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' [100%] Built target tortoize-unit-test make[2]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' dh_auto_test cd obj-i686-linux-gnu && make -j6 test ARGS\+=--verbose ARGS\+=-j6 make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j6 UpdateCTestConfiguration from :/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: tortoize-unit-test 1: Test command: /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu/tortoize-unit-test "--" "/build/reproducible-path/tortoize-2.0.13/test" 1: Working Directory: /build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu 1: Test timeout computed to be: 1500 1: Running 1 test case... 1: CCD components.cif resource was not found 1: 1: Configuration error: 1: 1: The attempt to retrieve compound information for "ALA" failed. 1: 1: This information is searched for in a CCD file called components.cif or 1: components.cif.gz which should be located in one of the following directories: 1: 1: "/build/reproducible-path/tortoize-2.0.13/test/../rsrc" 1: "/var/cache/libcifpp" 1: "/usr/share/libcifpp" 1: 1: (Note that you can add a directory to the search paths by setting the 1: LIBCIFPP_DATA_DIR environmental variable) 1: 1: On Linux an optional cron script might have been installed that automatically updates 1: components.cif and mmCIF dictionary files. This script only works when the file 1: libcifpp.conf contains an uncommented line with the text: 1: 1: update=true 1: 1: If you do not have a working cron script, you can manually update the files 1: in /var/cache/libcifpp using the following commands: 1: 1: curl -o /var/cache/libcifpp/components.cif https://files.wwpdb.org/pub/pdb/data/monomers/components.cif 1: curl -o /var/cache/libcifpp/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic 1: curl -o /var/cache/libcifpp/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic 1: 1: The current order of compound factory objects is: 1: 1: CCD components.cif resource 1: Unknown compound: ALA 1: Unknown compound: ARG 1: Unknown compound: ASN 1: Unknown compound: ASP 1: Unknown compound: CYS 1: Unknown compound: GLN 1: Unknown compound: GLU 1: Unknown compound: GLY 1: Unknown compound: HOH 1: Unknown compound: ILE 1: Unknown compound: LEU 1: Unknown compound: LYS 1: Unknown compound: MET 1: Unknown compound: PHE 1: Unknown compound: PRO 1: Unknown compound: REA 1: Unknown compound: SER 1: Unknown compound: THR 1: Unknown compound: TRP 1: Unknown compound: TYR 1: Unknown compound: VAL 1: Missing compound information for PRO 1: Missing compound information for ASN 1: Missing compound information for PHE 1: Missing compound information for SER 1: Missing compound information for GLY 1: Missing compound information for TRP 1: Missing compound information for LYS 1: Missing compound information for ILE 1: Missing compound information for ARG 1: Missing compound information for GLU 1: Missing compound information for LEU 1: Missing compound information for VAL 1: Missing compound information for MET 1: Missing compound information for ALA 1: Missing compound information for GLN 1: Missing compound information for ASP 1: Missing compound information for THR 1: Missing compound information for TYR 1: Missing compound information for CYS 1: Missing compound information for REA 1: Missing compound information for HOH 1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme 1: Canonical sequences do not match for entity 1 1: loading residues 1: calculating secondary structure 1: Considering 804 pairs of residues 1: calculating alpha helices 1: calculating pp helices 1: 1: *** No errors detected 1:  1/1 Test #1: tortoize-unit-test ............... Passed 0.22 sec 100% tests passed, 0 tests failed out of 1 Total Test time (real) = 0.22 sec make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/tortoize/ cd obj-i686-linux-gnu && make -j6 install DESTDIR=/build/reproducible-path/tortoize-2.0.13/debian/tortoize AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/tortoize-2.0.13 -B/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/tortoize-2.0.13/debian/tortoize/usr/bin/tortoize -- Installing: /build/reproducible-path/tortoize-2.0.13/debian/tortoize/usr/share/man/man1/tortoize.1 make[1]: Leaving directory '/build/reproducible-path/tortoize-2.0.13/obj-i686-linux-gnu' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'tortoize-dbgsym' in '../tortoize-dbgsym_2.0.13-1_i386.deb'. dpkg-deb: building package 'tortoize' in '../tortoize_2.0.13-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../tortoize_2.0.13-1_i386.buildinfo dpkg-genchanges --build=binary -O../tortoize_2.0.13-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15650 and its subdirectories I: Current time: Sun Nov 30 12:44:46 -12 2025 I: pbuilder-time-stamp: 1764549886 Mon Oct 28 18:21:51 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom07-i386.debian.net. Mon Oct 28 18:21:51 UTC 2024 I: Preparing to do remote build '2' on infom07-i386.debian.net. Mon Oct 28 18:25:33 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. Mon Oct 28 18:25:34 UTC 2024 I: tortoize_2.0.13-1_i386.changes: Format: 1.8 Date: Thu, 17 Oct 2024 17:57:49 +0200 Source: tortoize Binary: tortoize tortoize-dbgsym Architecture: i386 Version: 2.0.13-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: tortoize - Application to calculate ramachandran z-scores Closes: 1045986 Changes: tortoize (2.0.13-1) unstable; urgency=medium . * New upstream. * Fix ftbfs, Closes: #1045986 Checksums-Sha1: 585b1ff25be316bd530876101f7f261fc39c0586 3777228 tortoize-dbgsym_2.0.13-1_i386.deb 33e2c98c12dea9d0208af74984fcb9cc206a599b 6838 tortoize_2.0.13-1_i386.buildinfo 8e2afbec24f4be067dbf46dbc90fd2331a0a6a70 870744 tortoize_2.0.13-1_i386.deb Checksums-Sha256: 32c1590f1cb2d528c54757172a741f78b236d4ba7b6610f3cf2abed1088803e4 3777228 tortoize-dbgsym_2.0.13-1_i386.deb 47c7e2ceff02ee039903416a75551dd015f5371c24504140f276f2eea9a7ae94 6838 tortoize_2.0.13-1_i386.buildinfo 451a7c0d9a0320b9b890242a704e1c018359b998f40e61dbe2a9424cc7b6d3a4 870744 tortoize_2.0.13-1_i386.deb Files: 1577697fcca522d5bb4b6402b8b5ebbd 3777228 debug optional tortoize-dbgsym_2.0.13-1_i386.deb cc0ef97bfd37ede58b7d459713089efb 6838 science optional tortoize_2.0.13-1_i386.buildinfo f1fd1fa42bdff887c29f306d3b6a08d6 870744 science optional tortoize_2.0.13-1_i386.deb Mon Oct 28 18:25:35 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_16-46075.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1uM166CD/tortoize_2.0.13-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1uM166CD/tortoize_2.0.13-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1uM166CD/tortoize_2.0.13-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1uM166CD/b1/tortoize_2.0.13-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.1uM166CD/b2/tortoize_2.0.13-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.459s) 0.459s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.064s) 0.064s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 814ms CPU time consumed: 811ms Mon Oct 28 18:25:36 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Mon Oct 28 18:25:36 UTC 2024 I: tortoize from unstable built successfully and reproducibly on i386. Mon Oct 28 18:25:38 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Oct 28 18:25:38 UTC 2024 I: Submitting 8.0K b1/tortoize_2.0.13-1_i386.buildinfo.asc Mon Oct 28 18:25:39 UTC 2024 I: Submitting 8.0K b2/tortoize_2.0.13-1_i386.buildinfo.asc Mon Oct 28 18:25:39 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Oct 28 18:25:39 UTC 2024 I: Done submitting .buildinfo files. Mon Oct 28 18:25:39 UTC 2024 I: Removing signed tortoize_2.0.13-1_i386.buildinfo.asc files: removed './b1/tortoize_2.0.13-1_i386.buildinfo.asc' removed './b2/tortoize_2.0.13-1_i386.buildinfo.asc'