Thu Apr 11 02:36:01 UTC 2024 I: starting to build squizz/unstable/i386 on jenkins on '2024-04-11 02:35' Thu Apr 11 02:36:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/23336/console.log Thu Apr 11 02:36:02 UTC 2024 I: Downloading source for unstable/squizz=0.99d+dfsg-3 --2024-04-11 02:36:02-- http://deb.debian.org/debian/pool/main/s/squizz/squizz_0.99d%2bdfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2138 (2.1K) [text/prs.lines.tag] Saving to: ‘squizz_0.99d+dfsg-3.dsc’ 0K .. 100% 249M=0s 2024-04-11 02:36:02 (249 MB/s) - ‘squizz_0.99d+dfsg-3.dsc’ saved [2138/2138] Thu Apr 11 02:36:02 UTC 2024 I: squizz_0.99d+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: squizz Binary: squizz, libsquizz, libsquizz-dev Architecture: any Version: 0.99d+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/squizz Vcs-Git: https://salsa.debian.org/med-team/squizz.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: libsquizz deb libs optional arch=any libsquizz-dev deb libdevel optional arch=any squizz deb science optional arch=any Checksums-Sha1: 5c5f13f94c8e3c8959214d699c37e6bae0039221 638292 squizz_0.99d+dfsg.orig.tar.xz 5b27678687f939590b9a5deac3fe29581b01358f 5216 squizz_0.99d+dfsg-3.debian.tar.xz Checksums-Sha256: b1b264da5801b5488d5a1a4e3ff6b8a6c0ce396ab34fcedab61271cb5c20e481 638292 squizz_0.99d+dfsg.orig.tar.xz 69a9976bb28a9c0396c8551997c68be3a646bedbf34b9d49f17cfbe6dc016abd 5216 squizz_0.99d+dfsg-3.debian.tar.xz Files: 9ce5bc629c7420f6cd9de5cbfb3619be 638292 squizz_0.99d+dfsg.orig.tar.xz 0db90eaf6e05dfceb7849dbe29bac834 5216 squizz_0.99d+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl834ncUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFJBA//RjirXTDZ3WASfu3nmSYqf2wzznWw J1rT1Q8X1Ujs+kmt6ZhaqvPzTUDH5hAg7TLO7Z81lTyLEYfvdL+15xeYUDoRg9FF onfUuVpA6jXpQ0TGrOC/NGiY9mXmoPOcQ2Amzo2Btj0bnISWlVQP6eH8bAgVf26b ARFimP/ewJxT7XRUnqiz/qtlxJJdaIDl4alScXR6UJ7IqDfkcKLfviiKguM0+PH8 ZeL+rQDSeRtVj7iJQ39gEqi6IlQD/OKpl7g9qtZQ+O110lcJXNEgtpA3Qx9LIDry GBvlHXQcNBEXfyNX6kWQm6vscKHk+ZFyxRK9sw2BmZ+5rVy3jCLvxeJ7WyVbm23Y stDk1u2kIsY9TXHLCaqsVS5Fl72lnq8Hdu13EllAYhqclX9lL6BKBHWWdFpaKFNT 5f1jS0q03+v1NCGdovrVIT0Kx06VvE/r9PskR/qtCHAW1X5paKnnMGxBNNmqPA3v RA46IphPvIrHSUPtinh2TuyA16r8SGFAhzKGQyzlQzGtOFfcu33sYBFVqwApJyfP csnk+Yz4tI0JnLDUrzFUoWgu+2MxyL73enngEP0Lw6GW8r3o9g8hVetvDHKJC9um 50CqCxXUaZUASUs0lc7ECLh/sXlWnHPIkFqD4t7lbsHi13FODqjZBmp9lOI6Bf6C OJNwTov4OZsEj+w= =qlUj -----END PGP SIGNATURE----- Thu Apr 11 02:36:02 UTC 2024 I: Checking whether the package is not for us Thu Apr 11 02:36:02 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Thu Apr 11 02:36:02 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Thu Apr 11 02:37:41 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 10 14:36:05 -12 2024 I: pbuilder-time-stamp: 1712802965 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [squizz_0.99d+dfsg-3.dsc] I: copying [./squizz_0.99d+dfsg.orig.tar.xz] I: copying [./squizz_0.99d+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Aug 15 13:26:15 2020 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./squizz_0.99d+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting squizz in squizz-0.99d+dfsg dpkg-source: info: unpacking squizz_0.99d+dfsg.orig.tar.xz dpkg-source: info: unpacking squizz_0.99d+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying correct-manpages-section.patch dpkg-source: info: applying disable-swissprot-test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/61441/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9daf601865a6487c8506fbe75912b697' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='61441' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.i57n4FQq/pbuilderrc_8YKb --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.i57n4FQq/b1 --logfile b1/build.log squizz_0.99d+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 9 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/61441/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 73.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.22 [22.4 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.21-14+b1 [162 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-3+b1 [1195 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40-5 [96.7 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.1-1 [1421 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.9.14+dfsg-1.3+b2 [727 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 gettext i386 0.21-14+b1 [1311 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 debhelper all 13.15.3 [901 kB] Fetched 19.3 MB in 1s (30.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19681 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14+b1_i386.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3+b1_i386.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40-5_i386.deb ... Unpacking bsdextrautils (2.40-5) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.1-1_i386.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.15.3_all.deb ... Unpacking libdebhelper-perl (13.15.3) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../22-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../24-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_i386.deb ... Unpacking libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14+b1_i386.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Setting up libpipeline1:i386 (1.5.7-2) ... Setting up libicu72:i386 (72.1-4+b1) ... Setting up bsdextrautils (2.40-5) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libxml2:i386 (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14+b1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.37-16) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/squizz-0.99d+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../squizz_0.99d+dfsg-3_source.changes dpkg-buildpackage: info: source package squizz dpkg-buildpackage: info: source version 0.99d+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:14: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:14: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:14: the top level configure.ac:16: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... aclocal.m4:668: AM_PROG_LEX is expanded from... configure.ac:16: the top level configure.ac:12: installing './compile' configure.ac:3: installing './missing' lib/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for bison... no checking for byacc... no checking for flex... no checking for lex... no checking for pod2man... pod2man checking for pod2html... pod2html checking for err.h... yes checking for inttypes.h... (cached) yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for off_t... yes checking for size_t... yes checking size of size_t... 4 checking for uint64_t... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for strftime... yes checking for localtime_r... yes checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating src/Makefile config.status: creating data/Makefile config.status: creating doc/Makefile config.status: creating test/Makefile config.status: creating lib/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j11 make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' Making all in . make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' Making all in lib make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make all-am make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence.lo sequence.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration 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/bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbank.lo sequence/genbank.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbanky.lo sequence/genbanky.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/genbankl.lo sequence/genbankl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time 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gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gcgy.lo sequence/gcgy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcg.c -fPIC -DPIC -o sequence/.libs/gcg.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/gcgl.lo sequence/gcgl.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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-fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgy.c -fPIC -DPIC -o sequence/.libs/gcgy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gde.c -fPIC -DPIC -o sequence/.libs/gde.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcgl.c -fPIC -DPIC -o sequence/.libs/gcgl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gcg.c -o sequence/gcg.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sequence/ig.lo sequence/ig.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/gdey.c -fPIC -DPIC -o sequence/.libs/gdey.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c sequence/fastal.c -o sequence/fastal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 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libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/stock.c -o align/stock.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o align/phylip.lo align/phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/parse.c -fPIC -DPIC -o align/.libs/parse.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylipil.c -o align/phylipil.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/stocky.c -o align/stocky.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylipsl.c -o align/phylipsl.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylip.c -fPIC -DPIC -o align/.libs/phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/parse.c -o align/parse.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/phylip.c -o align/phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c align/stockl.c -o align/stockl.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioseq.la -rpath /usr/lib/i386-linux-gnu sequence.lo sequence/embl.lo sequence/embly.lo sequence/embll.lo sequence/fasta.lo sequence/fastay.lo sequence/fastal.lo sequence/genbank.lo sequence/genbanky.lo sequence/genbankl.lo sequence/gcg.lo sequence/gcgy.lo sequence/gcgl.lo sequence/gde.lo sequence/gdey.lo sequence/gdel.lo sequence/ig.lo sequence/igy.lo sequence/igl.lo sequence/nbrf.lo sequence/nbrfy.lo sequence/nbrfl.lo sequence/codata.lo sequence/codatay.lo sequence/codatal.lo sequence/raw.lo sequence/rawy.lo sequence/rawl.lo sequence/sprot.lo sequence/sproty.lo sequence/sprotl.lo sequence/parse.lo sequence/protein.lo sequence/utils.lo extern/text.lo extern/file.lo libtool: link: gcc -shared -fPIC -DPIC .libs/sequence.o sequence/.libs/embl.o sequence/.libs/embly.o sequence/.libs/embll.o sequence/.libs/fasta.o sequence/.libs/fastay.o sequence/.libs/fastal.o sequence/.libs/genbank.o sequence/.libs/genbanky.o sequence/.libs/genbankl.o sequence/.libs/gcg.o sequence/.libs/gcgy.o sequence/.libs/gcgl.o sequence/.libs/gde.o sequence/.libs/gdey.o sequence/.libs/gdel.o sequence/.libs/ig.o sequence/.libs/igy.o sequence/.libs/igl.o sequence/.libs/nbrf.o sequence/.libs/nbrfy.o sequence/.libs/nbrfl.o sequence/.libs/codata.o sequence/.libs/codatay.o sequence/.libs/codatal.o sequence/.libs/raw.o sequence/.libs/rawy.o sequence/.libs/rawl.o sequence/.libs/sprot.o sequence/.libs/sproty.o sequence/.libs/sprotl.o sequence/.libs/parse.o sequence/.libs/protein.o sequence/.libs/utils.o extern/.libs/text.o extern/.libs/file.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioseq.so.0 -o .libs/libbioseq.so.0.0.0 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbioali.la -rpath /usr/lib/i386-linux-gnu align.lo align/clustal.lo align/clustaly.lo align/clustall.lo align/fasta2.lo align/mega.lo align/megay.lo align/megal.lo align/msf.lo align/msfy.lo align/msfl.lo align/nexusi.lo align/nexusiy.lo align/nexusil.lo align/phylipi.lo align/phylipiy.lo align/phylipil.lo align/phylips.lo align/phylipsy.lo align/phylipsl.lo align/stock.lo align/stocky.lo align/stockl.lo align/parse.lo align/phylip.lo libtool: link: (cd ".libs" && rm -f "libbioseq.so.0" && ln -s "libbioseq.so.0.0.0" "libbioseq.so.0") libtool: link: (cd ".libs" && rm -f "libbioseq.so" && ln -s "libbioseq.so.0.0.0" "libbioseq.so") libtool: link: ar cr .libs/libbioseq.a sequence.o sequence/embl.o sequence/embly.o sequence/embll.o sequence/fasta.o sequence/fastay.o sequence/fastal.o sequence/genbank.o sequence/genbanky.o sequence/genbankl.o sequence/gcg.o sequence/gcgy.o sequence/gcgl.o sequence/gde.o sequence/gdey.o sequence/gdel.o sequence/ig.o sequence/igy.o sequence/igl.o sequence/nbrf.o sequence/nbrfy.o sequence/nbrfl.o sequence/codata.o sequence/codatay.o sequence/codatal.o sequence/raw.o sequence/rawy.o sequence/rawl.o sequence/sprot.o sequence/sproty.o sequence/sprotl.o sequence/parse.o sequence/protein.o sequence/utils.o extern/text.o extern/file.o libtool: link: ranlib .libs/libbioseq.a libtool: link: ( cd ".libs" && rm -f "libbioseq.la" && ln -s "../libbioseq.la" "libbioseq.la" ) libtool: link: gcc -shared -fPIC -DPIC .libs/align.o align/.libs/clustal.o align/.libs/clustaly.o align/.libs/clustall.o align/.libs/fasta2.o align/.libs/mega.o align/.libs/megay.o align/.libs/megal.o align/.libs/msf.o align/.libs/msfy.o align/.libs/msfl.o align/.libs/nexusi.o align/.libs/nexusiy.o align/.libs/nexusil.o align/.libs/phylipi.o align/.libs/phylipiy.o align/.libs/phylipil.o align/.libs/phylips.o align/.libs/phylipsy.o align/.libs/phylipsl.o align/.libs/stock.o align/.libs/stocky.o align/.libs/stockl.o align/.libs/parse.o align/.libs/phylip.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libbioali.so.0 -o .libs/libbioali.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libbioali.so.0" && ln -s "libbioali.so.0.0.0" "libbioali.so.0") libtool: link: (cd ".libs" && rm -f "libbioali.so" && ln -s "libbioali.so.0.0.0" "libbioali.so") libtool: link: ar cr .libs/libbioali.a align.o align/clustal.o align/clustaly.o align/clustall.o align/fasta2.o align/mega.o align/megay.o align/megal.o align/msf.o align/msfy.o align/msfl.o align/nexusi.o align/nexusiy.o align/nexusil.o align/phylipi.o align/phylipiy.o align/phylipil.o align/phylips.o align/phylipsy.o align/phylipsl.o align/stock.o align/stocky.o align/stockl.o align/parse.o align/phylip.o libtool: link: ranlib .libs/libbioali.a libtool: link: ( cd ".libs" && rm -f "libbioali.la" && ln -s "../libbioali.la" "libbioali.la" ) make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' Making all in src make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o squizz.o squizz.c gcc -DHAVE_CONFIG_H -I. -I../lib -I./../lib -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o format.o format.c /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o squizz squizz.o format.o ../lib/libbioali.la ../lib/libbioseq.la libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/squizz-0.99d+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/squizz squizz.o format.o ../lib/.libs/libbioali.so ../lib/.libs/libbioseq.so make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' Making all in data make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' Making all in doc make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' Making all in test make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' dh_auto_test --no-parallel make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' Making check in . make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' Making check in lib make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' Making check in src make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' Making check in data make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' Making check in doc make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' Making check in test make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make check-TESTS make[4]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[5]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' PASS: squizz.sh PASS: fmtseq.sh PASS: fmtali.sh PASS: convseq.sh PASS: convali.sh PASS: embl.sh PASS: genbank.sh PASS: ig.sh PASS: nbrf.sh PASS: raw.sh PASS: align.sh PASS: clustal.sh PASS: mega.sh PASS: msf.sh PASS: nexusi.sh PASS: phylipi.sh PASS: phylips.sh PASS: stockholm.sh PASS: count.sh ============================================================================ Testsuite summary for squizz 0.99d ============================================================================ # TOTAL: 19 # PASS: 19 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[4]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/squizz-0.99d\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' Making install in . make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' Making install in lib make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libbioseq.la libbioali.la '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/libbioseq.so.0.0.0 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.so.0.0.0 libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so.0 || { rm -f libbioseq.so.0 && ln -s libbioseq.so.0.0.0 libbioseq.so.0; }; }) libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioseq.so.0.0.0 libbioseq.so || { rm -f libbioseq.so && ln -s libbioseq.so.0.0.0 libbioseq.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioseq.lai /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.la libtool: install: /usr/bin/install -c .libs/libbioali.so.0.0.0 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.so.0.0.0 libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioali.so.0.0.0 libbioali.so.0 || { rm -f libbioali.so.0 && ln -s libbioali.so.0.0.0 libbioali.so.0; }; }) libtool: install: (cd /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f libbioali.so.0.0.0 libbioali.so || { rm -f libbioali.so && ln -s libbioali.so.0.0.0 libbioali.so; }; }) libtool: install: /usr/bin/install -c .libs/libbioali.lai /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.la libtool: install: /usr/bin/install -c .libs/libbioseq.a /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.a libtool: install: chmod 644 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.a libtool: install: ranlib /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioseq.a libtool: install: /usr/bin/install -c .libs/libbioali.a /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: install: chmod 644 /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: install: ranlib /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libbioali.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/install -c -m 644 align/clustal.h align/fasta2.h align/mega.h align/msf.h align/nexusi.h align/phylipi.h align/phylips.h align/stock.h '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/align' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence/embl.h sequence/fasta.h sequence/genbank.h sequence/gcg.h sequence/gde.h sequence/ig.h sequence/nbrf.h sequence/codata.h sequence/raw.h sequence/sprot.h '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/sequence' /usr/bin/install -c -m 644 sequence.h align.h '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/include/squizz/.' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/lib' Making install in src make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/src' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c squizz '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/bin' libtool: warning: '../lib/libbioali.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: warning: '../lib/libbioseq.la' has not been installed in '/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/squizz /build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/bin/squizz make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/src' Making install in data make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/data' Making install in doc make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/install -c -m 644 seqfmt.html alifmt.html '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/doc/squizz' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 'squizz.man' '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man1/squizz.1' /usr/bin/mkdir -p '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5' /usr/bin/install -c -m 644 'seqfmt.man' '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/seqfmt.5' /usr/bin/install -c -m 644 'alifmt.man' '/build/reproducible-path/squizz-0.99d+dfsg/debian/tmp/usr/share/man/man5/alifmt.5' make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/doc' Making install in test make[2]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[3]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[2]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg/test' make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/reproducible-path/squizz-0.99d+dfsg' # Remove un-needed html and la files find debian/tmp -name '*.la' | xargs rm -rf find debian/tmp -name '*.html' | xargs rm -rf dh_missing make[1]: Leaving directory '/build/reproducible-path/squizz-0.99d+dfsg' dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol text_strupd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fastay_parse used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol xstrdup used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_fixnam used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol fasta_print used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_free used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_new used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol gcg_crc used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol sequence_type used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol parse_stradd used by debian/libsquizz/usr/lib/libbioali.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libsquizz-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'squizz-dbgsym' in '../squizz-dbgsym_0.99d+dfsg-3_i386.deb'. dpkg-deb: building package 'libsquizz-dbgsym' in '../libsquizz-dbgsym_0.99d+dfsg-3_i386.deb'. dpkg-deb: building package 'squizz' in '../squizz_0.99d+dfsg-3_i386.deb'. dpkg-deb: building package 'libsquizz' in '../libsquizz_0.99d+dfsg-3_i386.deb'. dpkg-deb: building package 'libsquizz-dev' in '../libsquizz-dev_0.99d+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../squizz_0.99d+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../squizz_0.99d+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/61441 and its subdirectories I: Current time: Wed Apr 10 14:37:40 -12 2024 I: pbuilder-time-stamp: 1712803060 Thu Apr 11 02:37:41 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Thu Apr 11 02:37:41 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Thu Apr 11 02:38:29 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Thu Apr 11 02:38:30 UTC 2024 I: squizz_0.99d+dfsg-3_i386.changes: Format: 1.8 Date: Sat, 15 Aug 2020 18:51:14 +0530 Source: squizz Binary: libsquizz libsquizz-dbgsym libsquizz-dev squizz squizz-dbgsym Architecture: i386 Version: 0.99d+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: libsquizz - Conversion libs used by squizz genetic sequence converter libsquizz-dev - development tools for squizz genetic sequence converter squizz - Converter for genetic sequences and alignments Changes: squizz (0.99d+dfsg-3) unstable; urgency=medium . * Team Upload. [ Steffen Möller ] * Update metadata with ref to conda . [ Nilesh Patra ] * Add autopkgtests * compat version: 13, standards version: 4.5.0 * Add "Rules-Requires-Root:no" * Fix whatis entry * Remove un-needed html and la files Checksums-Sha1: 3e20fd55cbcb0d036af8e3531bc02e06f8da38cf 191316 libsquizz-dbgsym_0.99d+dfsg-3_i386.deb 3c78a3ae18ae916f8a8e4626eccf839968930fbe 278524 libsquizz-dev_0.99d+dfsg-3_i386.deb 84780dd5c72d9653712061bf6e8fbebdcf5e93c0 263580 libsquizz_0.99d+dfsg-3_i386.deb 5abf2d59cbbbddb441b0305c99f881de7ea0e23c 10064 squizz-dbgsym_0.99d+dfsg-3_i386.deb ec83f75b219de4133d51c96abd4bc33245ae4029 5945 squizz_0.99d+dfsg-3_i386.buildinfo 30d40a69d4dac86cd0fd156503bd793996c0b0d3 31664 squizz_0.99d+dfsg-3_i386.deb Checksums-Sha256: 3ba40bdcd3b0c434348f53d6c46394d6485bfaf8c14d03aecb000f5af6cef7db 191316 libsquizz-dbgsym_0.99d+dfsg-3_i386.deb 1e5a9506ce14e49c1e75523b3e0f08e83ee0e9d0180c3cb87622eb1f8e6f960d 278524 libsquizz-dev_0.99d+dfsg-3_i386.deb 3390244b1010025d52b733cadd8b4553732d805e910c5e3020ee7f8b1b79d07f 263580 libsquizz_0.99d+dfsg-3_i386.deb 970dd148c633aa95a9d6f56433d3176e299fafdba276d7050e75c7c975072618 10064 squizz-dbgsym_0.99d+dfsg-3_i386.deb 24ea05bf792b09d6adb788c4bf9d76947fe9de523d81b4329628a42f36048428 5945 squizz_0.99d+dfsg-3_i386.buildinfo dc9708fb2c03db2ae97d042ca841f0c437584a8ace71ec50f466c2d0f3eb8466 31664 squizz_0.99d+dfsg-3_i386.deb Files: 1f49511d92ef40cfa08b1878ba58158b 191316 debug optional libsquizz-dbgsym_0.99d+dfsg-3_i386.deb c156d57890ae0663a50e9baa61aeb4de 278524 libdevel optional libsquizz-dev_0.99d+dfsg-3_i386.deb 904022622d449d22ed53f56b35d55d1c 263580 libs optional libsquizz_0.99d+dfsg-3_i386.deb 4b3ef3377ccf38b518e30779313ff5d1 10064 debug optional squizz-dbgsym_0.99d+dfsg-3_i386.deb 920ab117df1196f46b847ef59931bea6 5945 science optional squizz_0.99d+dfsg-3_i386.buildinfo 57c7d5fea871c73c9e926c6c01664fd4 31664 science optional squizz_0.99d+dfsg-3_i386.deb Thu Apr 11 02:38:31 UTC 2024 I: diffoscope 263 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_7-23336.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.i57n4FQq/squizz_0.99d+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.i57n4FQq/squizz_0.99d+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.i57n4FQq/squizz_0.99d+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.i57n4FQq/b1/squizz_0.99d+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.i57n4FQq/b2/squizz_0.99d+dfsg-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.379s) 0.379s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 716ms CPU time consumed: 717ms Thu Apr 11 02:38:32 UTC 2024 I: diffoscope 263 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 11 02:38:32 UTC 2024 I: squizz from unstable built successfully and reproducibly on i386. Thu Apr 11 02:38:34 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Apr 11 02:38:34 UTC 2024 I: Submitting 8.0K b1/squizz_0.99d+dfsg-3_i386.buildinfo.asc Thu Apr 11 02:38:34 UTC 2024 I: Submitting 8.0K b2/squizz_0.99d+dfsg-3_i386.buildinfo.asc Thu Apr 11 02:38:35 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 11 02:38:35 UTC 2024 I: Done submitting .buildinfo files. Thu Apr 11 02:38:35 UTC 2024 I: Removing signed squizz_0.99d+dfsg-3_i386.buildinfo.asc files: removed './b1/squizz_0.99d+dfsg-3_i386.buildinfo.asc' removed './b2/squizz_0.99d+dfsg-3_i386.buildinfo.asc'