Mon Oct 28 00:36:19 UTC 2024 I: starting to build r-bioc-degnorm/unstable/i386 on jenkins on '2024-10-28 00:36' Mon Oct 28 00:36:19 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_16/45868/console.log Mon Oct 28 00:36:19 UTC 2024 I: Downloading source for unstable/r-bioc-degnorm=1.14.0+ds-1 --2024-10-28 00:36:20-- http://deb.debian.org/debian/pool/main/r/r-bioc-degnorm/r-bioc-degnorm_1.14.0%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2468 (2.4K) [text/prs.lines.tag] Saving to: ‘r-bioc-degnorm_1.14.0+ds-1.dsc’ 0K .. 100% 293M=0s 2024-10-28 00:36:20 (293 MB/s) - ‘r-bioc-degnorm_1.14.0+ds-1.dsc’ saved [2468/2468] Mon Oct 28 00:36:20 UTC 2024 I: r-bioc-degnorm_1.14.0+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-degnorm Binary: r-bioc-degnorm Architecture: any Version: 1.14.0+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/DegNorm/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-degnorm Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-degnorm.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-r, r-base-dev, r-cran-rcpp, r-bioc-genomicfeatures (>= 1.56.0), r-cran-foreach, r-bioc-s4vectors (>= 0.42.1), r-cran-doparallel, r-bioc-rsamtools (>= 2.20.0), r-bioc-genomicalignments (>= 1.40.0), r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo, r-bioc-txdbmaker Package-List: r-bioc-degnorm deb gnu-r optional arch=any Checksums-Sha1: 53875af8f27c16955088e69425f824c5c7d966e0 1680888 r-bioc-degnorm_1.14.0+ds.orig.tar.xz c9071fedeb840c6183be72370576a7c9914160a2 3196 r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz Checksums-Sha256: 4c893c9e79039f776f2a0474c44279a44004e965508c82453cb299c1679966f5 1680888 r-bioc-degnorm_1.14.0+ds.orig.tar.xz a97a704b4428ae74fd9c8264e0b4f2f4c5d305d10e9eae992b883a5314f0f500 3196 r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz Files: 13d1ac2b8c14764b0668fd21792f3b37 1680888 r-bioc-degnorm_1.14.0+ds.orig.tar.xz d3c8695b1ef2d1b3e4ec245852ff0da2 3196 r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbBzJ8ACgkQPCZ2P2xn 5uJI0w/8DnP4Lu9eITFwEp0R1aH+UQ4Xt7/EgQ1IB0sC3fUTptYJYXvP9+LMFtnB qZVOzc4un3NvgsVGkZsp5h07oOOKM6WnAeygFZYuIodChQaMoGeqSxTBTdWfPK2l +DqLvkhn+G3sOjHFBXjytGov7z4SuI8TNoh+/oM0I57EDQsYLIL2Ryg0ky+8HTr2 v1EpDJzbHhh86hH1pCo8PhP/0cU0VA49nOm/cVbMasTLQmy1qjIDyObFKdlrK77e tr8o2WPVX5mrbm7H6SUfXduQz3erObspPyf5YwT3XMzftLGwSWU0NI4A/VVhlu5i 2P/PDWKCLWcYCA2H7VljJ6tOy3pCiVlpDnSaxrxv3m/TgWFthsdcQVD/aWpVtcrq 2xId++ObKWK27GVmglqxAl1uglU9w04tQrJ7EhCZdVwR3THfawLfnzETYila9k5x 9AnbmD99+c9UST8NKajxJ2sJHaCIQTc0QLf8iQ1/bCbI2kdjmRYXHEEafS+kEpXa AGwjweBlHZvQECfxoQwnapl+GMQVRYDke51EWuaDmYoyqkAmCFVHmPksowJOSciK 9v7YZ6G6aGahll+R6u8Sk/d7NkJYvKcwiv1RJ3TQvJjX5SkDS9707N9ASeKjzjQh +HM0xRLm8IwgWdRUIAYBNvj24YIS7l2USBAkxUa+4JbLE/SfAeU= =1EoB -----END PGP SIGNATURE----- Mon Oct 28 00:36:20 UTC 2024 I: Checking whether the package is not for us Mon Oct 28 00:36:20 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Mon Oct 28 00:36:20 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Mon Oct 28 00:36:38 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 29 18:59:20 -12 2025 I: pbuilder-time-stamp: 1764485960 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-degnorm_1.14.0+ds-1.dsc] I: copying [./r-bioc-degnorm_1.14.0+ds.orig.tar.xz] I: copying [./r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:27:43 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-degnorm_1.14.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-degnorm in r-bioc-degnorm-1.14.0+ds dpkg-source: info: unpacking r-bioc-degnorm_1.14.0+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-degnorm_1.14.0+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11711/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='64c8c41397c14b8d96a763042f59bcd5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11711' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6SKnwP2v/pbuilderrc_JgJ1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6SKnwP2v/b1 --logfile b1/build.log r-bioc-degnorm_1.14.0+ds-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/11711/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, dh-r, r-base-dev, r-cran-rcpp, r-bioc-genomicfeatures (>= 1.56.0), r-cran-foreach, r-bioc-s4vectors (>= 0.42.1), r-cran-doparallel, r-bioc-rsamtools (>= 2.20.0), r-bioc-genomicalignments (>= 1.40.0), r-cran-heatmaply, r-cran-data.table, r-cran-ggplot2, r-bioc-genomicranges (>= 1.56.1), r-bioc-iranges (>= 2.38.1), r-cran-plyr, r-cran-plotly, r-cran-viridis, r-cran-rcpparmadillo, r-bioc-txdbmaker dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19933 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicfeatures (>= 1.56.0); however: Package r-bioc-genomicfeatures is not installed. pbuilder-satisfydepends-dummy depends on r-cran-foreach; however: Package r-cran-foreach is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-cran-doparallel; however: Package r-cran-doparallel is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools (>= 2.20.0); however: Package r-bioc-rsamtools is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicalignments (>= 1.40.0); however: Package r-bioc-genomicalignments is not installed. pbuilder-satisfydepends-dummy depends on r-cran-heatmaply; however: Package r-cran-heatmaply is not installed. pbuilder-satisfydepends-dummy depends on r-cran-data.table; however: Package r-cran-data.table is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.56.1); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.38.1); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-cran-plyr; however: Package r-cran-plyr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-plotly; however: Package r-cran-plotly is not installed. pbuilder-satisfydepends-dummy depends on r-cran-viridis; however: Package r-cran-viridis is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpparmadillo; however: Package r-cran-rcpparmadillo is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-txdbmaker; however: Package r-bioc-txdbmaker is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnuma1{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} littler{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-s4vectors{a} r-cran-askpass{a} r-cran-assertthat{a} r-cran-base64enc{a} r-cran-bslib{a} r-cran-ca{a} r-cran-cachem{a} r-cran-callr{a} r-cran-cli{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-colourpicker{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-curl{a} r-cran-data.table{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-egg{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-foreach{a} r-cran-fs{a} r-cran-gclus{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-heatmaply{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-miniui{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-permute{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plotly{a} r-cran-plyr{a} r-cran-processx{a} r-cran-promises{a} r-cran-ps{a} r-cran-purrr{a} r-cran-qap{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpparmadillo{a} r-cran-registry{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-scales{a} r-cran-seriation{a} r-cran-shiny{a} r-cran-shinyjs{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-tsp{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vegan{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-webshot{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-abind r-cran-ape r-cran-bench r-cran-bit r-cran-bit64 r-cran-brio r-cran-broom r-cran-cairo r-cran-caret r-cran-circlize r-cran-corrplot r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-dbscan r-cran-decor r-cran-desc r-cran-dichromat r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-dynamictreecut r-cran-forcats r-cran-formatr r-cran-formattable r-cran-fpc r-cran-future r-cran-ggalluvial r-cran-ggally r-cran-ggthemes r-cran-gplots r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-irdisplay r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mlbench r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-palmerpenguins r-cran-pingr r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-profvis r-cran-progress r-cran-pvclust r-cran-quantreg r-cran-r.rsp r-cran-r.utils r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-rtsne r-cran-runit r-cran-rversions r-cran-sf r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webfakes r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 325 newly installed, 0 to remove and 0 not upgraded. Need to get 237 MB of archives. After unpacking 840 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Depends: r-bioc-genomicfeatures (>= 1.56.0) but it is not installable Depends: r-bioc-rsamtools (>= 2.20.0) which is a virtual package and is not provided by any available package Depends: r-bioc-genomicalignments (>= 1.40.0) which is a virtual package and is not provided by any available package Depends: r-bioc-genomicranges (>= 1.56.1) which is a virtual package and is not provided by any available package Depends: r-bioc-iranges (>= 2.38.1) which is a virtual package and is not provided by any available package Depends: r-bioc-txdbmaker but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnuma1{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} 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r-cran-callr{a} r-cran-cli{a} r-cran-cluster{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-colourpicker{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-crosstalk{a} r-cran-curl{a} r-cran-data.table{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-doparallel{a} r-cran-dplyr{a} r-cran-egg{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-foreach{a} r-cran-fs{a} r-cran-gclus{a} r-cran-generics{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-heatmaply{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-later{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-miniui{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-permute{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plotly{a} r-cran-plyr{a} r-cran-processx{a} r-cran-promises{a} r-cran-ps{a} r-cran-purrr{a} r-cran-qap{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpparmadillo{a} r-cran-registry{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-scales{a} r-cran-seriation{a} r-cran-shiny{a} r-cran-shinyjs{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-tsp{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vegan{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-webshot{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-cran-abind r-cran-ape r-cran-bench r-cran-bit r-cran-bit64 r-cran-brio r-cran-broom r-cran-cairo r-cran-caret r-cran-circlize r-cran-corrplot r-cran-covr r-cran-dbi r-cran-dbplyr r-cran-dbscan r-cran-decor r-cran-desc r-cran-dichromat r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-dynamictreecut r-cran-forcats r-cran-formatr r-cran-formattable r-cran-fpc r-cran-future r-cran-ggalluvial r-cran-ggally r-cran-ggthemes r-cran-gplots r-cran-gridsvg r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-irdisplay r-cran-itertools r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mlbench r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-palmerpenguins r-cran-pingr r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-profvis r-cran-progress r-cran-pvclust r-cran-quantreg r-cran-r.rsp r-cran-r.utils r-cran-ragg r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-rpart r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-rtsne r-cran-runit r-cran-rversions r-cran-sf r-cran-sodium r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webfakes r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 325 newly installed, 0 to remove and 0 not upgraded. Need to get 237 MB of archives. After unpacking 840 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11711 and its subdirectories Mon Oct 28 00:36:39 UTC 2024 W: No second build log, what happened? Mon Oct 28 00:36:39 UTC 2024 W: Downloading the build dependencies failed Mon Oct 28 00:36:39 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Oct 28 00:36:39 UTC 2024 W: Network problems are automatically rescheduled after some hours.