Sat Sep 28 02:10:33 UTC 2024 I: starting to build r-bioc-biocstyle/unstable/i386 on jenkins on '2024-09-28 02:10' Sat Sep 28 02:10:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/26113/console.log Sat Sep 28 02:10:33 UTC 2024 I: Downloading source for unstable/r-bioc-biocstyle=2.32.1+dfsg-1 --2024-09-28 02:10:33-- http://deb.debian.org/debian/pool/main/r/r-bioc-biocstyle/r-bioc-biocstyle_2.32.1%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2219 (2.2K) [text/prs.lines.tag] Saving to: ‘r-bioc-biocstyle_2.32.1+dfsg-1.dsc’ 0K .. 100% 260M=0s 2024-09-28 02:10:33 (260 MB/s) - ‘r-bioc-biocstyle_2.32.1+dfsg-1.dsc’ saved [2219/2219] Sat Sep 28 02:10:33 UTC 2024 I: r-bioc-biocstyle_2.32.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-biocstyle Binary: r-bioc-biocstyle Architecture: all Version: 2.32.1+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/BiocStyle/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-biocstyle Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-biocstyle.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-bookdown, r-cran-knitr, r-cran-rmarkdown, r-cran-yaml, r-cran-biocmanager, xdg-utils, r-bioc-biocversion (>= 3.19.1) Package-List: r-bioc-biocstyle deb gnu-r optional arch=all Checksums-Sha1: c7cde6449e14d15e8418d4e9dee857c6b954fc10 366892 r-bioc-biocstyle_2.32.1+dfsg.orig.tar.xz 0c12662821fc1b00bad9ab53681798ce2a195cf0 5932 r-bioc-biocstyle_2.32.1+dfsg-1.debian.tar.xz Checksums-Sha256: 4c97be2c87d924b026dcfd143ce88b94f7d85b225d76c587e0696473b83033da 366892 r-bioc-biocstyle_2.32.1+dfsg.orig.tar.xz 17643437be3eda49c11bec9ff817afdf92d06918c2031d0cc75bf2684f6a94a3 5932 r-bioc-biocstyle_2.32.1+dfsg-1.debian.tar.xz Files: afd482b4dfbccb5418afdef507a2594c 366892 r-bioc-biocstyle_2.32.1+dfsg.orig.tar.xz 390e90ddfbe97cef782f4da36b21774d 5932 r-bioc-biocstyle_2.32.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAma/NuAACgkQPCZ2P2xn 5uKX7w//Wm/YjkfbWgjnjzx+D7h5O+jjEIt/IhQ7UVSMaY9FrQhWw08LArXIXrWy iV/aPrTzI0UVn2VbjOLmSkHTWhDTXQ/dmw/2AMp35p4U/EAT6q5SztiuqY9ns6g4 LS1GWMmRvlQ7f1TdSv0T/ZqUZmvAi3YSCk1NDjyfYZqOvvNlliy7CaUyu+8Xj++8 +noeTNCtmZXuuYEEBz/XhdEH9G/2HlXjkxCDRHAF/xj9pTErEVViOPCh+jUBCyRH FyXZBrJENgD7/ByGVfVKaauYSWBoXO2NrTjY4ED2R6l7lhgYSQ03r0ktfqFMJ7Sw 1R+aUxeKYJI4Wb8LuMpWzO0/prkjPk2gx04062jK7mXzGD0bEch/qcAhfvWOmly7 cyhMd6QqHjrxEQ9RrKv7cciG5A9y0l1ZYYG+Vz+83dBFQLWnB7Si5Y8AHvQ8Q45/ YBGvCSe0/ofKGBNFH56ZF3qlN8dV5pepy7OWDJFvXe7jyPrd26medgm+MoBrZR4w tSJKy/i1jg3TFKGr+UGmmYtkFxetDI0PKlRis3ONj9+AOblo6TMpJWoMODYpu06a ZIaHIlAnIfBt9MiPfoMaBH/78f9whxhkRMpo5fg8Tsh+2KaW4RR5kGPaTu90DGXr 3EH9TrI3h+ViCoey4ouWcQuk14njRFPvKtXZ+Po8TifloLVY6eE= =3hWv -----END PGP SIGNATURE----- Sat Sep 28 02:10:33 UTC 2024 I: Checking whether the package is not for us Sat Sep 28 02:10:33 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Sat Sep 28 02:10:33 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Sat Sep 28 02:11:23 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 20:33:31 -12 2025 I: pbuilder-time-stamp: 1761899611 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-biocstyle_2.32.1+dfsg-1.dsc] I: copying [./r-bioc-biocstyle_2.32.1+dfsg.orig.tar.xz] I: copying [./r-bioc-biocstyle_2.32.1+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 11:24:16 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-biocstyle_2.32.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-biocstyle in r-bioc-biocstyle-2.32.1+dfsg dpkg-source: info: unpacking r-bioc-biocstyle_2.32.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-biocstyle_2.32.1+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/62114/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e0f7ff471438446fbb711315a2832a34' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='62114' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HlcANTJB/pbuilderrc_WG1T --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HlcANTJB/b1 --logfile b1/build.log r-bioc-biocstyle_2.32.1+dfsg-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/62114/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-bookdown, r-cran-knitr, r-cran-rmarkdown, r-cran-yaml, r-cran-biocmanager, xdg-utils, r-bioc-biocversion (>= 3.19.1) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19774 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bookdown; however: Package r-cran-bookdown is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. pbuilder-satisfydepends-dummy depends on r-cran-yaml; however: Package r-cran-yaml is not installed. pbuilder-satisfydepends-dummy depends on r-cran-biocmanager; however: Package r-cran-biocmanager is not installed. pbuilder-satisfydepends-dummy depends on xdg-utils; however: Package xdg-utils is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocversion (>= 3.19.1); however: Package r-bioc-biocversion is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-i686-linux-gnu{a} gfortran-i686-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-lunr{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} littler{a} m4{a} man-db{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-biocversion{a} r-cran-base64enc{a} r-cran-biocmanager{a} r-cran-bookdown{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-commonmark{a} r-cran-crayon{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-fs{a} r-cran-glue{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-later{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-memoise{a} r-cran-mime{a} r-cran-pkgkitten{a} r-cran-promises{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcpp{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-sass{a} r-cran-shiny{a} r-cran-sourcetools{a} r-cran-tinytex{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-bioc-biocstyle r-cran-cairo r-cran-callr r-cran-codetools r-cran-covr r-cran-curl r-cran-dbi r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-formatr r-cran-future r-cran-ggplot2 r-cran-gridsvg r-cran-htmlwidgets r-cran-httr r-cran-jpeg r-cran-lattice r-cran-lintr r-cran-magick r-cran-markdown r-cran-miniui r-cran-mockery r-cran-pillar r-cran-png r-cran-processx r-cran-ps r-cran-purrr r-cran-r.rsp r-cran-ragg r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-sf r-cran-spelling r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tibble r-cran-tidyverse r-cran-tikzdevice r-cran-tufte r-cran-usethis r-cran-vctrs r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 259 newly installed, 0 to remove and 0 not upgraded. Need to get 177 MB of archives. After unpacking 731 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-4 [255 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 openssl i386 3.3.2-1 [1386 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-8 [102 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 zip i386 3.0-14 [239 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 unzip i386 6.0-28 [166 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libpaper1 i386 1.1.29+b1 [13.0 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libpaper-utils i386 1.1.29+b1 [9280 B] Get: 40 http://deb.debian.org/debian unstable/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.44-2 [288 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2 [148 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2 [116 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2 [105 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b1 [55.3 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b1 [28.8 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 65 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-7 [226 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.10.1-1 [391 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.21-1 [48.0 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.82.1-1 [1570 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-5 [735 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 fontconfig i386 2.15.0-1.1 [462 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.15-1 [72.4 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 9.0.0-1 [500 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libdatrie1 i386 0.2.13-3 [39.5 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libthai0 i386 0.1.29-2 [50.1 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libpango-1.0-0 i386 1.54.0+ds-2 [230 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libpangoft2-1.0-0 i386 1.54.0+ds-2 [57.9 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libpangocairo-1.0-0 i386 1.54.0+ds-2 [36.0 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libtcl8.6 i386 8.6.15+dfsg-2 [1103 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.4.0-0.1 [113 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.4.0-0.1 [318 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libxft2 i386 2.3.6-1+b1 [55.3 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libxss1 i386 1:1.2.3-1+b1 [17.3 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libtk8.6 i386 8.6.15-1 [833 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libice6 i386 2:1.0.10-1+b1 [58.6 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libsm6 i386 2:1.2.3-1+b1 [33.9 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libxt6t64 i386 1:1.2.1-1.2 [193 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 r-base-core i386 4.4.1-3 [28.3 MB] Get: 107 http://deb.debian.org/debian unstable/main i386 libgfortran-14-dev i386 14.2.0-5 [800 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 gfortran-14-i686-linux-gnu i386 14.2.0-5 [12.5 MB] Get: 109 http://deb.debian.org/debian unstable/main i386 gfortran-14 i386 14.2.0-5 [11.8 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 gfortran-i686-linux-gnu i386 4:14.1.0-2 [1284 B] Get: 111 http://deb.debian.org/debian unstable/main i386 gfortran i386 4:14.1.0-2 [1432 B] Get: 112 http://deb.debian.org/debian unstable/main i386 libblas-dev i386 3.12.0-3 [152 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libncurses6 i386 6.5-2 [111 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libncurses-dev i386 6.5-2 [380 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libreadline-dev i386 8.2-5 [166 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo-dev i386 1:2.1.5-3 [303 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libjpeg-dev i386 1:2.1.5-3 [71.9 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libpcre2-16-0 i386 10.42-4+b1 [244 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libpcre2-32-0 i386 10.42-4+b1 [233 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 libpcre2-posix3 i386 10.42-4+b1 [55.8 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 libpcre2-dev i386 10.42-4+b1 [759 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libpng-dev i386 1.6.44-2 [373 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 liblzma-dev i386 5.6.2-2 [312 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 icu-devtools i386 72.1-5 [216 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libicu-dev i386 72.1-5 [10.6 MB] Get: 129 http://deb.debian.org/debian unstable/main i386 libxmuu1 i386 2:1.1.3-3+b2 [21.9 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 xauth i386 1:1.1.2-1 [36.7 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 libpkgconf3 i386 1.8.1-3 [38.2 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 pkgconf-bin i386 1.8.1-3 [30.3 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 pkgconf i386 1.8.1-3 [26.1 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 libtirpc-dev i386 1.3.4+ds-1.3 [199 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 libdeflate-dev i386 1.21-1 [57.1 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 r-base-dev all 4.4.1-3 [4512 B] Get: 137 http://deb.debian.org/debian unstable/main i386 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 libclone-perl i386 0.47-1 [13.7 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 liburi-perl all 5.29-1 [103 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 libhttp-message-perl all 6.46-1 [79.7 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 libparams-util-perl i386 1.102-3 [24.4 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 libb-hooks-op-check-perl i386 0.22-3+b1 [10.7 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 libdevel-callchecker-perl i386 0.009-1 [15.9 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 libparams-classify-perl i386 0.015-2+b3 [23.1 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 libclass-load-xs-perl i386 0.10-2+b3 [14.3 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian unstable/main i386 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian unstable/main i386 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian unstable/main i386 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian unstable/main i386 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian unstable/main i386 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian unstable/main i386 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian unstable/main i386 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 libpackage-stash-xs-perl i386 0.30-1+b3 [20.5 kB] Get: 173 http://deb.debian.org/debian unstable/main i386 libmoose-perl i386 2.2207-1+b1 [767 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 libvariable-magic-perl i386 0.64-1 [45.2 kB] Get: 175 http://deb.debian.org/debian unstable/main i386 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian unstable/main i386 libsub-identify-perl i386 0.14-3+b2 [11.2 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 libsub-name-perl i386 0.27-1+b2 [12.6 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian unstable/main i386 libnghttp3-9 i386 1.4.0-1 [74.3 kB] Get: 180 http://deb.debian.org/debian unstable/main i386 libngtcp2-16 i386 1.6.0-1 [154 kB] Get: 181 http://deb.debian.org/debian unstable/main i386 libngtcp2-crypto-gnutls8 i386 1.6.0-1 [20.2 kB] Get: 182 http://deb.debian.org/debian unstable/main i386 libcurl3t64-gnutls i386 8.10.1-1 [400 kB] Get: 183 http://deb.debian.org/debian unstable/main i386 libwww-curl-perl i386 4.17-10+b2 [61.6 kB] Get: 184 http://deb.debian.org/debian unstable/main i386 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian unstable/main i386 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 187 http://deb.debian.org/debian unstable/main i386 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 188 http://deb.debian.org/debian unstable/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 189 http://deb.debian.org/debian unstable/main i386 javascript-common all 11+nmu1 [6260 B] Get: 190 http://deb.debian.org/debian unstable/main i386 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 191 http://deb.debian.org/debian unstable/main i386 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 192 http://deb.debian.org/debian unstable/main i386 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 193 http://deb.debian.org/debian unstable/main i386 libjs-d3 all 3.5.17-4 [132 kB] Get: 194 http://deb.debian.org/debian unstable/main i386 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 195 http://deb.debian.org/debian unstable/main i386 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 196 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 197 http://deb.debian.org/debian unstable/main i386 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 198 http://deb.debian.org/debian unstable/main i386 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 199 http://deb.debian.org/debian unstable/main i386 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 200 http://deb.debian.org/debian unstable/main i386 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 201 http://deb.debian.org/debian unstable/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 202 http://deb.debian.org/debian unstable/main i386 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 203 http://deb.debian.org/debian unstable/main i386 libjs-lunr all 2.3.9~dfsg-2 [76.6 kB] Get: 204 http://deb.debian.org/debian unstable/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 205 http://deb.debian.org/debian unstable/main i386 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 206 http://deb.debian.org/debian unstable/main i386 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 207 http://deb.debian.org/debian unstable/main i386 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 208 http://deb.debian.org/debian unstable/main i386 liblua5.4-0 i386 5.4.6-3+b1 [169 kB] Get: 209 http://deb.debian.org/debian unstable/main i386 libuv1t64 i386 1.48.0-6 [157 kB] Get: 210 http://deb.debian.org/debian unstable/main i386 libyaml-0-2 i386 0.2.5-1+b1 [55.2 kB] Get: 211 http://deb.debian.org/debian unstable/main i386 r-cran-littler i386 0.3.20-1 [92.3 kB] Get: 212 http://deb.debian.org/debian unstable/main i386 littler all 0.3.20-1 [16.0 kB] Get: 213 http://deb.debian.org/debian unstable/main i386 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 214 http://deb.debian.org/debian unstable/main i386 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 215 http://deb.debian.org/debian unstable/main i386 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 216 http://deb.debian.org/debian unstable/main i386 pandoc-data all 3.1.3-3 [446 kB] Get: 217 http://deb.debian.org/debian unstable/main i386 pandoc i386 3.1.3+ds-3+b1 [35.7 MB] Get: 218 http://deb.debian.org/debian unstable/main i386 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 219 http://deb.debian.org/debian unstable/main i386 r-bioc-biocversion all 3.19.1-1 [10.9 kB] Get: 220 http://deb.debian.org/debian unstable/main i386 r-cran-base64enc i386 0.1-3-3 [28.4 kB] Get: 221 http://deb.debian.org/debian unstable/main i386 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] Get: 222 http://deb.debian.org/debian unstable/main i386 r-cran-digest i386 0.6.37-1 [210 kB] Get: 223 http://deb.debian.org/debian unstable/main i386 r-cran-fastmap i386 1.2.0-1 [73.1 kB] Get: 224 http://deb.debian.org/debian unstable/main i386 r-cran-rlang i386 1.1.4-1 [1727 kB] Get: 225 http://deb.debian.org/debian unstable/main i386 r-cran-htmltools i386 0.5.8.1-1 [378 kB] Get: 226 http://deb.debian.org/debian unstable/main i386 r-cran-evaluate all 0.24.0-1 [93.7 kB] Get: 227 http://deb.debian.org/debian unstable/main i386 r-cran-xfun i386 0.47+dfsg-1 [527 kB] Get: 228 http://deb.debian.org/debian unstable/main i386 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 229 http://deb.debian.org/debian unstable/main i386 r-cran-yaml i386 2.3.10-1 [113 kB] Get: 230 http://deb.debian.org/debian unstable/main i386 r-cran-knitr all 1.48+dfsg-1 [912 kB] Get: 231 http://deb.debian.org/debian unstable/main i386 r-cran-cachem i386 1.1.0-1 [74.0 kB] Get: 232 http://deb.debian.org/debian unstable/main i386 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 233 http://deb.debian.org/debian unstable/main i386 r-cran-jsonlite i386 1.8.8+dfsg-1 [446 kB] Get: 234 http://deb.debian.org/debian unstable/main i386 r-cran-cli i386 3.6.3-1 [1344 kB] Get: 235 http://deb.debian.org/debian unstable/main i386 r-cran-glue i386 1.7.0-1 [157 kB] Get: 236 http://deb.debian.org/debian unstable/main i386 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 237 http://deb.debian.org/debian unstable/main i386 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 238 http://deb.debian.org/debian unstable/main i386 r-cran-mime i386 0.12-2 [35.6 kB] Get: 239 http://deb.debian.org/debian unstable/main i386 r-cran-fs i386 1.6.4+dfsg-1 [249 kB] Get: 240 http://deb.debian.org/debian unstable/main i386 r-cran-r6 all 2.5.1-1 [105 kB] Get: 241 http://deb.debian.org/debian unstable/main i386 r-cran-rappdirs i386 0.3.3-1 [47.5 kB] Get: 242 http://deb.debian.org/debian unstable/main i386 r-cran-sass i386 0.4.9+dfsg-1 [1015 kB] Get: 243 http://deb.debian.org/debian unstable/main i386 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 244 http://deb.debian.org/debian unstable/main i386 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 245 http://deb.debian.org/debian unstable/main i386 r-cran-tinytex all 0.51-1 [146 kB] Get: 246 http://deb.debian.org/debian unstable/main i386 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 247 http://deb.debian.org/debian unstable/main i386 r-cran-rcpp i386 1.0.13-1 [2086 kB] Get: 248 http://deb.debian.org/debian unstable/main i386 r-cran-later i386 1.3.2+dfsg-1 [121 kB] Get: 249 http://deb.debian.org/debian unstable/main i386 r-cran-magrittr i386 2.0.3-1 [201 kB] Get: 250 http://deb.debian.org/debian unstable/main i386 r-cran-promises i386 1.3.0+dfsg-1 [285 kB] Get: 251 http://deb.debian.org/debian unstable/main i386 r-cran-httpuv i386 1.6.15+dfsg-1 [505 kB] Get: 252 http://deb.debian.org/debian unstable/main i386 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 253 http://deb.debian.org/debian unstable/main i386 r-cran-sourcetools i386 0.1.7-1-1 [47.1 kB] Get: 254 http://deb.debian.org/debian unstable/main i386 r-cran-crayon all 1.5.2-1 [165 kB] Get: 255 http://deb.debian.org/debian unstable/main i386 r-cran-withr all 3.0.0+dfsg-1 [240 kB] Get: 256 http://deb.debian.org/debian unstable/main i386 r-cran-commonmark i386 1.9.1-1 [123 kB] Get: 257 http://deb.debian.org/debian unstable/main i386 r-cran-shiny all 1.8.1.1+dfsg-1 [2894 kB] Get: 258 http://deb.debian.org/debian unstable/main i386 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 259 http://deb.debian.org/debian unstable/main i386 r-cran-bookdown all 0.40+dfsg-1 [1404 kB] Fetched 177 MB in 3s (50.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19774 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... 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Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../029-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... 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Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../041-libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../042-libbrotli1_1.1.0-2+b4_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:i386. Preparing to unpack .../043-libpng16-16t64_1.6.44-2_i386.deb ... Unpacking libpng16-16t64:i386 (1.6.44-2) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../044-libfreetype6_2.13.3+dfsg-1_i386.deb ... Unpacking libfreetype6:i386 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../045-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../046-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../047-fontconfig-config_2.15.0-1.1_i386.deb ... Unpacking fontconfig-config (2.15.0-1.1) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../048-libfontconfig1_2.15.0-1.1_i386.deb ... Unpacking libfontconfig1:i386 (2.15.0-1.1) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../049-libpixman-1-0_0.42.2-1+b1_i386.deb ... Unpacking libpixman-1-0:i386 (0.42.2-1+b1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../050-libxau6_1%3a1.0.9-1+b1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1+b1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../051-libxdmcp6_1%3a1.1.2-3+b1_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3+b1) ... Selecting previously unselected package libxcb1:i386. 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Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1+b1_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1+b1) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../059-libcairo2_1.18.2-2_i386.deb ... Unpacking libcairo2:i386 (1.18.2-2) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../060-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../061-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../062-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../063-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../064-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../065-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../066-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../067-libsasl2-2_2.1.28+dfsg1-8_i386.deb ... Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:i386. Preparing to unpack .../068-libldap-2.5-0_2.5.18+dfsg-3_i386.deb ... Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../069-libnghttp2-14_1.63.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.63.0-1) ... Selecting previously unselected package libpsl5t64:i386. Preparing to unpack .../070-libpsl5t64_0.21.2-1.1_i386.deb ... Unpacking libpsl5t64:i386 (0.21.2-1.1) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../071-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:i386. Preparing to unpack .../072-libssh2-1t64_1.11.0-7_i386.deb ... Unpacking libssh2-1t64:i386 (1.11.0-7) ... Selecting previously unselected package libcurl4t64:i386. Preparing to unpack .../073-libcurl4t64_8.10.1-1_i386.deb ... Unpacking libcurl4t64:i386 (8.10.1-1) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../074-libdeflate0_1.21-1_i386.deb ... Unpacking libdeflate0:i386 (1.21-1) ... Selecting previously unselected package libglib2.0-0t64:i386. Preparing to unpack .../075-libglib2.0-0t64_2.82.1-1_i386.deb ... Unpacking libglib2.0-0t64:i386 (2.82.1-1) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../076-libjpeg62-turbo_1%3a2.1.5-3_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-3) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../077-libgfortran5_14.2.0-5_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-5) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../078-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../079-fontconfig_2.15.0-1.1_i386.deb ... Unpacking fontconfig (2.15.0-1.1) ... Selecting previously unselected package libfribidi0:i386. Preparing to unpack .../080-libfribidi0_1.0.15-1_i386.deb ... Unpacking libfribidi0:i386 (1.0.15-1) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../081-libgraphite2-3_1.3.14-2_i386.deb ... 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Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libncurses-dev:i386 (6.5-2) ... Setting up gettext (0.22.5-2) ... Setting up libpcre2-dev:i386 (10.42-4+b1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:i386 (1.6.44-2) ... Setting up libjpeg-dev:i386 (1:2.1.5-3) ... Setting up libxext6:i386 (2:1.3.4-1+b1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:i386 (0.009-1) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:i386 (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:i386 (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (3.1.3+ds-3+b1) ... Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up liblapack-dev:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up gfortran-14-i686-linux-gnu (14.2.0-5) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:i386 (9.0.0-1) ... Setting up libxss1:i386 (1:1.2.3-1+b1) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-5) ... Setting up libsm6:i386 (2:1.2.3-1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:i386 (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:i386 (2.3.6-1+b1) ... Setting up libcurl4t64:i386 (8.10.1-1) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:i386 (8.6.15-1) ... Setting up libparams-classify-perl:i386 (0.015-2+b3) ... Setting up libpango-1.0-0:i386 (1.54.0+ds-2) ... Setting up libcurl3t64-gnutls:i386 (8.10.1-1) ... Setting up libwww-curl-perl:i386 (4.17-10+b2) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libreadline-dev:i386 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.18.2-2) ... Setting up libtirpc-dev:i386 (1.3.4+ds-1.3) ... Setting up gfortran-i686-linux-gnu (4:14.1.0-2) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:i386 (1:1.2.1-1.2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:i386 (1.54.0+ds-2) ... Setting up libpangocairo-1.0-0:i386 (1.54.0+ds-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up gfortran (4:14.1.0-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.1-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-sourcetools (0.1.7-1-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b3) ... Setting up r-cran-commonmark (1.9.1-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-magrittr (2.0.3-1) ... Setting up r-cran-rappdirs (0.3.3-1) ... Setting up r-cran-littler (0.3.20-1) ... Setting up r-cran-fs (1.6.4+dfsg-1) ... Setting up r-cran-rcpp (1.0.13-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-rlang (1.1.4-1) ... Setting up r-base-dev (4.4.1-3) ... Setting up littler (0.3.20-1) ... Setting up r-cran-xfun (0.47+dfsg-1) ... Setting up r-cran-withr (3.0.0+dfsg-1) ... Setting up r-cran-mime (0.12-2) ... Setting up libmoose-perl:i386 (2.2207-1+b1) ... Setting up r-cran-base64enc (0.1-3-3) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-evaluate (0.24.0-1) ... Setting up r-cran-highr (0.11+dfsg-1) ... Setting up r-cran-glue (1.7.0-1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-bioc-biocversion (3.19.1-1) ... Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-later (1.3.2+dfsg-1) ... Setting up r-cran-htmltools (0.5.8.1-1) ... Setting up r-cran-tinytex (0.51-1) ... Setting up r-cran-knitr (1.48+dfsg-1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1) ... Setting up dh-r (20231212) ... Setting up r-cran-httpuv (1.6.15+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-cran-shiny (1.8.1.1+dfsg-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up r-cran-bookdown (0.40+dfsg-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-biocstyle-2.32.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-biocstyle_2.32.1+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-biocstyle dpkg-buildpackage: info: source version 2.32.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-biocstyle/ -O--buildsystem=R I: R Package: BiocStyle Version: 2.32.1 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 16 Aug 2024 13:23:41 +0200 mkdir -p /build/reproducible-path/r-bioc-biocstyle-2.32.1\+dfsg/debian/r-bioc-biocstyle/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-biocstyle-2.32.1\+dfsg/debian/r-bioc-biocstyle/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 16 Aug 2024 13:23:41 +0200'" * installing *source* package 'BiocStyle' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocStyle) I: Using r-bioc-biocgenerics for Suggests:BiocGenerics I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-htmltools for Suggests:htmltools I: Using r-cran-bookdown for Imports:bookdown I: Using r-cran-knitr for Imports:knitr (>= 1.30) I: Using r-cran-rmarkdown for Imports:rmarkdown (>= 1.2) I: Using r-cran-yaml for Imports:yaml I: Using r-cran-biocmanager for Imports:BiocManager I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-biocstyle as Debian binary package for variables substitution debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/r-bioc-biocstyle-2.32.1+dfsg' dh_install # For whatever reason this test is failing - remove it for the moment find debian -name test_pdf_document.R -delete make[1]: Leaving directory '/build/reproducible-path/r-bioc-biocstyle-2.32.1+dfsg' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R debian/rules override_dh_link make[1]: Entering directory '/build/reproducible-path/r-bioc-biocstyle-2.32.1+dfsg' dh_link dh_link usr/share/texlive/texmf-dist/bibtex/bst/urlbst/unsrturl.bst usr/lib/R/site-library/BiocStyle/resources/tex/unsrturl.bst make[1]: Leaving directory '/build/reproducible-path/r-bioc-biocstyle-2.32.1+dfsg' dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-biocstyle' in '../r-bioc-biocstyle_2.32.1+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../r-bioc-biocstyle_2.32.1+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/62114 and its subdirectories I: Current time: Thu Oct 30 20:34:19 -12 2025 I: pbuilder-time-stamp: 1761899659 Sat Sep 28 02:11:24 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Sat Sep 28 02:11:24 UTC 2024 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Sat Sep 28 02:12:47 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. Sat Sep 28 02:12:48 UTC 2024 I: r-bioc-biocstyle_2.32.1+dfsg-1_i386.changes: Format: 1.8 Date: Fri, 16 Aug 2024 13:23:41 +0200 Source: r-bioc-biocstyle Binary: r-bioc-biocstyle Architecture: all Version: 2.32.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-biocstyle - standard styles for vignettes and other Bioconductor documents Changes: r-bioc-biocstyle (2.32.1+dfsg-1) unstable; urgency=medium . * Team upload. * Upload to unstable. Checksums-Sha1: 660942c1e6ab4c470f11d44be3e29f92b525378b 453532 r-bioc-biocstyle_2.32.1+dfsg-1_all.deb e69f25a1793ee1734f887c2adf699356c9f9bc49 12127 r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo Checksums-Sha256: fe969e1f335beb7f308fe9413b121459cdbd0a5fd79d3c83366b634220722bc4 453532 r-bioc-biocstyle_2.32.1+dfsg-1_all.deb 61849c2f61749d6476e36d71dac041064f9b837bce025d26ba954f836808fdb7 12127 r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo Files: 408e0ee42484a4eb71d7741dba043935 453532 gnu-r optional r-bioc-biocstyle_2.32.1+dfsg-1_all.deb 8c47e2a7c15dab27a49b8dc5be9c01a1 12127 gnu-r optional r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo Sat Sep 28 02:12:49 UTC 2024 I: diffoscope 278 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_11-26113.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.HlcANTJB/r-bioc-biocstyle_2.32.1+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.HlcANTJB/r-bioc-biocstyle_2.32.1+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.HlcANTJB/r-bioc-biocstyle_2.32.1+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.HlcANTJB/b1/r-bioc-biocstyle_2.32.1+dfsg-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.HlcANTJB/b2/r-bioc-biocstyle_2.32.1+dfsg-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.509s) 0.509s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 881ms CPU time consumed: 879ms Sat Sep 28 02:12:51 UTC 2024 I: diffoscope 278 found no differences in the changes files, and a .buildinfo file also exists. Sat Sep 28 02:12:51 UTC 2024 I: r-bioc-biocstyle from unstable built successfully and reproducibly on i386. Sat Sep 28 02:12:52 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Sep 28 02:12:52 UTC 2024 I: Submitting 16K b1/r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo.asc Sat Sep 28 02:12:53 UTC 2024 I: Submitting 16K b2/r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo.asc Sat Sep 28 02:12:53 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Sep 28 02:12:53 UTC 2024 I: Done submitting .buildinfo files. Sat Sep 28 02:12:53 UTC 2024 I: Removing signed r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo.asc files: removed './b1/r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo.asc' removed './b2/r-bioc-biocstyle_2.32.1+dfsg-1_i386.buildinfo.asc'