Wed Jun 26 22:00:41 UTC 2024 I: starting to build q2cli/unstable/i386 on jenkins on '2024-06-26 22:00' Wed Jun 26 22:00:41 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_18/9704/console.log Wed Jun 26 22:00:41 UTC 2024 I: Downloading source for unstable/q2cli=2024.5.0-1 --2024-06-26 22:00:41-- http://deb.debian.org/debian/pool/main/q/q2cli/q2cli_2024.5.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2149 (2.1K) [text/prs.lines.tag] Saving to: ‘q2cli_2024.5.0-1.dsc’ 0K .. 100% 278M=0s 2024-06-26 22:00:41 (278 MB/s) - ‘q2cli_2024.5.0-1.dsc’ saved [2149/2149] Wed Jun 26 22:00:41 UTC 2024 I: q2cli_2024.5.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: q2cli Binary: q2cli Architecture: all Version: 2024.5.0-1 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Étienne Mollier Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2cli Vcs-Git: https://salsa.debian.org/med-team/q2cli.git Testsuite: autopkgtest Testsuite-Triggers: file, python3-all, python3-sklearn, q2-sample-classifier Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-pytest , python3-setuptools, qiime (>= 2024.5), python3-click Package-List: q2cli deb science optional arch=all Checksums-Sha1: 8c0a2431bbf93b242c8c6b13a3f305bf1eb41662 344807 q2cli_2024.5.0.orig.tar.gz c1e95139b8b8731be63d9add77e24745120b95cd 8924 q2cli_2024.5.0-1.debian.tar.xz Checksums-Sha256: f21eacb010e27318d89d40ccc4c212c21ad9ad7a7a0f2fc3a1ae53f090c5244c 344807 q2cli_2024.5.0.orig.tar.gz 91099247417214be41ab3172db560cd9b1cc83d67fba00098218d0a989e19d27 8924 q2cli_2024.5.0-1.debian.tar.xz Files: 71ae662e352877b815a35c93d33fdeed 344807 q2cli_2024.5.0.orig.tar.gz e1b2f77a74b27de279a855386986a9be 8924 q2cli_2024.5.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmZ6KWIACgkQPCZ2P2xn 5uL+Og//ZWfMQQivuNC6W/C5A+W3fs5HPZ8fdD4h7g+Vqu/szPEdiZShhim817V9 W4MFB10nDBxJxqr6VhabqO5JbBgUqM96DwsZnHoUy/B/5r0hlaZgnL7H4qYyIm0/ iHN1eDoQ5p9P0oos3SoT9QpYsW2kml2XGQxCmOIiAP2U7UxG72rVtdiFE0YOLzSa gnP1/rq5uQqJiw9THh5pf4x07ZjbNEERHNqh1gvEVSntTAc9jEKVq5gR54AAETFE LrFCMF1Kcvqqf8OE4tkiW7dTRGsa4Bf5Bgn+AT1ZMuPWIHF7AWqF/8qdph0JCSTo 5FUl6Iya3JYRPCcxgQoJfyLZ5ZTZbldwRbyKd0D7/JZ69es2e4E8Iis9Hs7WVVUw iTOKpGKQfoxEQ2W84PspIaBmEhqvKT5dUsWG11Nl3d3QD1SO64ANpFjc6Jeok6er ZMm7+1VM1yrvDWrJlYWPayZovwVRLkTWK9tIfu9eWtzN40A9HFXmgX1RNEEZCt+t llp4Pg46ZBcD555WZ4x9JGG44L7XKihXdJkuUuLJ20gPyDwy153K5E890XrHNSBx mRl9NTmbfbrA1sbt8PwfNAEGrQIVvRLa6GRUvkRvlyGO+a00640gJp1Ve8LWkDd7 nIjW/GDQGqBSK1sYKdz1BUJb7W04azbooG6psKxa+o3xMiylmGY= =gd0d -----END PGP SIGNATURE----- Wed Jun 26 22:00:41 UTC 2024 I: Checking whether the package is not for us Wed Jun 26 22:00:41 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Wed Jun 26 22:00:41 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Wed Jun 26 22:02:28 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jul 29 16:23:43 -12 2025 I: pbuilder-time-stamp: 1753849423 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [q2cli_2024.5.0-1.dsc] I: copying [./q2cli_2024.5.0.orig.tar.gz] I: copying [./q2cli_2024.5.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Jun 25 02:20:18 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2cli_2024.5.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2cli in q2cli-2024.5.0 dpkg-source: info: unpacking q2cli_2024.5.0.orig.tar.gz dpkg-source: info: unpacking q2cli_2024.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying configparser.patch dpkg-source: info: applying call_py3.patch dpkg-source: info: applying inform_zsh_users_howto_set_autocompletion.patch dpkg-source: info: applying bash-completion-with-hashbang.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/9445/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='1f7e0669635f457fa580bda7fbe927d0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='9445' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0nDFR9c2/pbuilderrc_6OQO --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0nDFR9c2/b1 --logfile b1/build.log q2cli_2024.5.0-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.7.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.7.12-1~bpo12+1 (2024-05-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/9445/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-pytest, python3-setuptools, qiime (>= 2024.5), python3-click dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19667 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2024.5); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on python3-click; however: Package python3-click is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsodium23{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-distutils{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jinja2{a} python3-jwt{a} python3-lib2to3{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-nacl{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-paramiko{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-six{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zmq{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-invoke python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2-types q2cli q2templates r-cran-plotly wget 0 packages upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 79.9 MB of archives. After unpacking 391 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.4-1 [811 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.2-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.4-1 [2218 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.2-1 [26.5 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-4 [171 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.4-1 [1947 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.4-1 [664 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.2-1 [9436 B] Get: 13 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.2-1 [27.5 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libpython3.11-minimal i386 3.11.9-1 [817 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 python3.11-minimal i386 3.11.9-1 [1918 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 openssl i386 3.2.2-1 [1367 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-1 [200 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-4 [1194 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.1-9 [101 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.7-2 [39.7 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 man-db i386 2.12.1-2 [1421 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 autoconf all 2.71-3 [332 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-1 [723 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.16 [88.6 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 39 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-1+b1 [194 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-4+b1 [9549 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg-3 [704 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-1 [1624 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 debhelper all 13.16 [891 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 python3-lib2to3 all 3.12.3-3.1 [77.7 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 python3-distutils all 3.12.3-3.1 [131 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 68.1.2-2 [468 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20240422 [107 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 javascript-common all 11+nmu1 [6260 B] Get: 54 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.1.0-2 [734 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.2-1 [34.5 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.2-1 [83.2 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 60 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.2-1 [350 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.2-1 [146 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libnorm1t64 i386 1.5.9+dfsg-3.1 [237 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libpgm-5.3-0t64 i386 5.3.128~dfsg-2.1 [167 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libpython3.11-stdlib i386 3.11.9-1 [1795 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libsodium23 i386 1.0.18-1+b1 [185 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libxslt1.1 i386 1.1.35-1+b1 [243 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libyaml-0-2 i386 0.2.5-1+b1 [55.2 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libzmq5 i386 4.3.5-1+b2 [306 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 node-fortawesome-fontawesome-free all 6.4.2+ds1-1 [1472 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 python3.11 i386 3.11.9-1 [602 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.12.2-1 [1060 B] Get: 76 http://deb.debian.org/debian unstable/main i386 python3-cffi-backend i386 1.16.0-2+b2 [114 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 python3-bcrypt i386 3.2.2-1 [35.0 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 python3-pyparsing all 3.1.2-1 [146 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 python3-bibtexparser all 2.0.0b5+really1.4.1-1 [34.2 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 python3-blinker all 1.8.2-1 [13.1 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2024.6.2-1 [157 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer all 3.3.2-1 [51.6 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 python3-colorama all 0.4.6-4 [36.2 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 python3-click all 8.1.7-1 [94.0 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 python3-cryptography i386 42.0.5-2 [1272 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 python3-six all 1.16.0-6 [16.3 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 python3-dateutil all 2.9.0-2 [79.4 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 python3-dill all 0.3.8-1 [81.7 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 python3-filelock all 3.14.0-1 [10.9 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 python3-markupsafe i386 2.1.5-1 [14.4 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 python3-jinja2 all 3.1.3-1 [119 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 python3-werkzeug all 3.0.3-1 [207 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 python3-flask all 3.0.3-1 [104 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 python3-greenlet i386 3.0.1-3 [181 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-1 [72.9 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 python3-sqlalchemy all 2.0.30+ds1-3 [1193 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 python3-flask-sqlalchemy all 3.1.1-2 [35.9 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 python3-psutil i386 5.9.8-2 [226 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 python3-public all 4.1.0-1 [6960 B] Get: 103 http://deb.debian.org/debian unstable/main i386 python3-flufl.lock all 8.1.0-1 [15.5 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 python3-jwt all 2.7.0-1 [29.7 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.6-2.1 [38.6 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.0.7-2 [111 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 python3-globus-sdk all 3.41.0-1 [247 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 110 http://deb.debian.org/debian unstable/main i386 python3-lxml i386 5.2.1-1 [1990 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 python3-nacl i386 1.5.0-4 [54.1 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 python3-networkx all 3.2.1-4 [14.2 MB] Get: 113 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-10 [5468 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.0-1 [45.5 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 python3-pandas-lib i386 2.1.4+dfsg-8 [7491 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 python3-pandas all 2.1.4+dfsg-8 [3015 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 python3-paramiko all 3.4.0-1 [142 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 python3-setproctitle i386 1.3.3-1+b2 [20.0 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 python3-tblib all 3.0.0-5 [13.7 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.1.5-1 [35.0 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 python3-py all 1.11.0-2 [88.7 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 python3-zmq i386 24.0.1-5+b1 [362 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 python3-parsl all 2024.05.27+ds-1 [278 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 python3-platformdirs all 4.2.1-1 [16.0 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.2.2-2 [248 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 python3-tomlkit all 0.12.5-1 [42.0 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 python3-tzlocal all 5.2-1.1 [23.7 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 python3-yaml i386 6.0.1-2 [176 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 qiime all 2024.5.0-1 [304 kB] Fetched 79.9 MB in 2s (47.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19667 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.4-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.4-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.2-1_i386.deb ... Unpacking libexpat1:i386 (2.6.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.4-1_i386.deb ... Unpacking python3.12-minimal (3.12.4-1) ... Setting up libpython3.12-minimal:i386 (3.12.4-1) ... Setting up libexpat1:i386 (2.6.2-1) ... Setting up python3.12-minimal (3.12.4-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19987 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.2-1_i386.deb ... Unpacking python3-minimal (3.12.2-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../5-libreadline8t64_8.2-4_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-4) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../6-libpython3.12-stdlib_3.12.4-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.4-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../7-python3.12_3.12.4-1_i386.deb ... Unpacking python3.12 (3.12.4-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../8-libpython3-stdlib_3.12.2-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.2-1) ... Setting up python3-minimal (3.12.2-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20989 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.2-1_i386.deb ... Unpacking python3 (3.12.2-1) ... Selecting previously unselected package libpython3.11-minimal:i386. Preparing to unpack .../001-libpython3.11-minimal_3.11.9-1_i386.deb ... Unpacking libpython3.11-minimal:i386 (3.11.9-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../002-python3.11-minimal_3.11.9-1_i386.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.2.2-1_i386.deb ... Unpacking openssl (3.2.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.22.5-1_i386.deb ... Unpacking gettext-base (0.22.5-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../010-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-4_i386.deb ... Unpacking groff-base (1.23.0-4) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.1-9_i386.deb ... Unpacking bsdextrautils (2.40.1-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../013-libpipeline1_1.5.7-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.12.1-2_i386.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-1_all.deb ... Unpacking autopoint (0.22.5-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.16_all.deb ... Unpacking libdebhelper-perl (13.16) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../025-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../026-libelf1t64_0.191-1+b1_i386.deb ... Unpacking libelf1t64:i386 (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../027-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../028-libicu72_72.1-4+b1_i386.deb ... Unpacking libicu72:i386 (72.1-4+b1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../029-libxml2_2.12.7+dfsg-3_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg-3) ... Selecting previously unselected package gettext. Preparing to unpack .../030-gettext_0.22.5-1_i386.deb ... Unpacking gettext (0.22.5-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../033-debhelper_13.16_all.deb ... Unpacking debhelper (13.16) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../034-python3-pkg-resources_68.1.2-2_all.deb ... Unpacking python3-pkg-resources (68.1.2-2) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../035-python3-lib2to3_3.12.3-3.1_all.deb ... Unpacking python3-lib2to3 (3.12.3-3.1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../036-python3-distutils_3.12.3-3.1_all.deb ... Unpacking python3-distutils (3.12.3-3.1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../037-python3-setuptools_68.1.2-2_all.deb ... Unpacking python3-setuptools (68.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../038-dh-python_6.20240422_all.deb ... Unpacking dh-python (6.20240422) ... Selecting previously unselected package fonts-glyphicons-halflings. Preparing to unpack .../039-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... Selecting previously unselected package javascript-common. Preparing to unpack .../040-javascript-common_11+nmu1_all.deb ... Unpacking javascript-common (11+nmu1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../041-libblas3_3.12.0-3_i386.deb ... Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../042-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../043-libgfortran5_14.1.0-2_i386.deb ... Unpacking libgfortran5:i386 (14.1.0-2) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../044-libkrb5support0_1.21.2-1_i386.deb ... Unpacking libkrb5support0:i386 (1.21.2-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../045-libk5crypto3_1.21.2-1_i386.deb ... Unpacking libk5crypto3:i386 (1.21.2-1) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../046-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../047-libkrb5-3_1.21.2-1_i386.deb ... Unpacking libkrb5-3:i386 (1.21.2-1) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../048-libgssapi-krb5-2_1.21.2-1_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.2-1) ... Selecting previously unselected package libjs-bootstrap. Preparing to unpack .../049-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../050-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-popper.js. Preparing to unpack .../051-libjs-popper.js_1.16.1+ds-6_all.deb ... Unpacking libjs-popper.js (1.16.1+ds-6) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../052-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package libnorm1t64:i386. Preparing to unpack .../053-libnorm1t64_1.5.9+dfsg-3.1_i386.deb ... Unpacking libnorm1t64:i386 (1.5.9+dfsg-3.1) ... Selecting previously unselected package libpgm-5.3-0t64:i386. Preparing to unpack .../054-libpgm-5.3-0t64_5.3.128~dfsg-2.1_i386.deb ... Unpacking libpgm-5.3-0t64:i386 (5.3.128~dfsg-2.1) ... Selecting previously unselected package libpython3.11-stdlib:i386. Preparing to unpack .../055-libpython3.11-stdlib_3.11.9-1_i386.deb ... Unpacking libpython3.11-stdlib:i386 (3.11.9-1) ... Selecting previously unselected package libsodium23:i386. Preparing to unpack .../056-libsodium23_1.0.18-1+b1_i386.deb ... Unpacking libsodium23:i386 (1.0.18-1+b1) ... Selecting previously unselected package libxslt1.1:i386. Preparing to unpack .../057-libxslt1.1_1.1.35-1+b1_i386.deb ... Unpacking libxslt1.1:i386 (1.1.35-1+b1) ... Selecting previously unselected package libyaml-0-2:i386. Preparing to unpack .../058-libyaml-0-2_0.2.5-1+b1_i386.deb ... Unpacking libyaml-0-2:i386 (0.2.5-1+b1) ... Selecting previously unselected package libzmq5:i386. Preparing to unpack .../059-libzmq5_4.3.5-1+b2_i386.deb ... Unpacking libzmq5:i386 (4.3.5-1+b2) ... Selecting previously unselected package node-fortawesome-fontawesome-free. Preparing to unpack .../060-node-fortawesome-fontawesome-free_6.4.2+ds1-1_all.deb ... Unpacking node-fortawesome-fontawesome-free (6.4.2+ds1-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../061-python3.11_3.11.9-1_i386.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../062-python3-all_3.12.2-1_i386.deb ... Unpacking python3-all (3.12.2-1) ... Selecting previously unselected package python3-cffi-backend:i386. Preparing to unpack .../063-python3-cffi-backend_1.16.0-2+b2_i386.deb ... Unpacking python3-cffi-backend:i386 (1.16.0-2+b2) ... Selecting previously unselected package python3-bcrypt. Preparing to unpack .../064-python3-bcrypt_3.2.2-1_i386.deb ... Unpacking python3-bcrypt (3.2.2-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../065-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-bibtexparser. Preparing to unpack .../066-python3-bibtexparser_2.0.0b5+really1.4.1-1_all.deb ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up python3.11-minimal (3.11.9-1) ... Setting up liblapack3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.22.5-1) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:i386 (1.21.2-1) ... Setting up libreadline8t64:i386 (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-4) ... Setting up libxslt1.1:i386 (1.1.35-1+b1) ... Setting up libzmq5:i386 (4.3.5-1+b2) ... Setting up libpython3.12-stdlib:i386 (3.12.4-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:i386 (3.11.9-1) ... Setting up python3.12 (3.12.4-1) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3-stdlib:i386 (3.12.2-1) ... Setting up python3.11 (3.11.9-1) ... Setting up debhelper (13.16) ... Setting up python3 (3.12.2-1) ... Setting up python3-markupsafe (2.1.5-1) ... Setting up python3-platformdirs (4.2.1-1) ... Setting up python3-psutil (5.9.8-2) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-6) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-certifi (2024.6.2-1) ... Setting up python3-werkzeug (3.0.3-1) ... Setting up python3-dill (0.3.8-1) ... Setting up python3-greenlet (3.0.1-3) ... Setting up python3-setproctitle:i386 (1.3.3-1+b2) ... Setting up python3-idna (3.6-2.1) ... Setting up python3-typing-extensions (4.12.2-1) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:i386 (5.2.1-1) ... Setting up python3-dateutil (2.9.0-2) ... Setting up python3-bibtexparser (2.0.0b5+really1.4.1-1) ... /usr/lib/python3/dist-packages/bibtexparser/latexenc.py:93: SyntaxWarning: invalid escape sequence '\g' string = re.sub('([^{]|^)([A-Z])([^}]|$)', '\g<1>{\g<2>}\g<3>', string) Setting up python3-tzlocal (5.2-1.1) ... Setting up python3-tomlkit (0.12.5-1) ... Setting up python3-lib2to3 (3.12.3-3.1) ... Setting up python3-cffi-backend:i386 (1.16.0-2+b2) ... Setting up python3-blinker (1.8.2-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.12.3-3.1) ... python3.12: can't get files for byte-compilation Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-filelock (3.14.0-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-tblib (3.0.0-5) ... Setting up python3-py (1.11.0-2) ... Setting up python3-jwt (2.7.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-public (4.1.0-1) ... Setting up python3-charset-normalizer (3.3.2-1) ... Setting up python3-pytest (8.2.2-2) ... Setting up python3-bcrypt (3.2.2-1) ... Setting up python3-typeguard (4.1.5-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.2-1) ... Setting up python3-yaml (6.0.1-2) ... Setting up python3-click (8.1.7-1) ... Setting up python3-networkx (3.2.1-4) ... Setting up python3-sqlalchemy (2.0.30+ds1-3) ... Setting up python3-flufl.lock (8.1.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-zmq (24.0.1-5+b1) ... Setting up python3-cryptography (42.0.5-2) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-10) ... Setting up python3-nacl (1.5.0-4) ... Setting up python3-globus-sdk (3.41.0-1) ... Setting up dh-python (6.20240422) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-pandas-lib:i386 (2.1.4+dfsg-8) ... Setting up python3-pandas (2.1.4+dfsg-8) ... Setting up python3-paramiko (3.4.0-1) ... Setting up python3-flask-sqlalchemy (3.1.1-2) ... Setting up python3-parsl (2024.05.27+ds-1) ... Setting up qiime (2024.5.0-1) ... Processing triggers for libc-bin (2.38-13) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/q2cli-2024.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../q2cli_2024.5.0-1_source.changes dpkg-buildpackage: info: source package q2cli dpkg-buildpackage: info: source version 2024.5.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean debian/rules:28: warning: overriding recipe for target 'debian/control' debian/rules:17: warning: ignoring old recipe for target 'debian/control' dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py clean running clean removing '/build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary debian/rules:28: warning: overriding recipe for target 'debian/control' debian/rules:17: warning: ignoring old recipe for target 'debian/control' dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.11 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.11 setup.py build running build running build_py creating /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli copying q2cli/__main__.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli copying q2cli/util.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli copying q2cli/commands.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli copying q2cli/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli copying q2cli/_version.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli creating /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/completion.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/config.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/state.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/usage.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/cache.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core copying q2cli/core/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core creating /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/info.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/dev.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin copying q2cli/builtin/tools.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin creating /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_tools.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_dev.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_mystery_stew.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_core.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_usage.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_cache_cli.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests copying q2cli/tests/test_cli.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests creating /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/type.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/option.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/command.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click copying q2cli/click/parser.py -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click running egg_info creating q2cli.egg-info writing q2cli.egg-info/PKG-INFO writing dependency_links to q2cli.egg-info/dependency_links.txt writing entry points to q2cli.egg-info/entry_points.txt writing top-level names to q2cli.egg-info/top_level.txt writing manifest file 'q2cli.egg-info/SOURCES.txt' reading manifest file 'q2cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'q2cli.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'q2cli.core.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'q2cli.core.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'q2cli.core.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'q2cli.core.assets' to be distributed and are already explicitly excluding 'q2cli.core.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'q2cli.tests.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'q2cli.tests.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'q2cli.tests.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'q2cli.tests.data' to be distributed and are already explicitly excluding 'q2cli.tests.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) creating /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/assets copying q2cli/core/assets/cli_howto.txt -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/assets copying q2cli/core/assets/copyright_note.txt -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/assets creating /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/data copying q2cli/tests/data/concatenated_ints.qza -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/data copying q2cli/tests/data/mapping_config.toml -> /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/data UPDATING /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/_version.py set /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/_version.py to '2024.5.0' running build_scripts creating build creating build/scripts-3.11 copying bin/tab-qiime -> build/scripts-3.11 changing mode of build/scripts-3.11/tab-qiime from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/q2cli-2024.5.0' debian/rules:28: warning: overriding recipe for target 'debian/control' debian/rules:17: warning: ignoring old recipe for target 'debian/control' dh_auto_test --no-parallel || true I: pybuild base:311: cd /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build; python3.11 -m pytest --ignore=q2cli/tests/test_usage.py ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-8.2.2, pluggy-1.5.0 rootdir: /build/reproducible-path/q2cli-2024.5.0 plugins: typeguard-4.1.5 collected 211 items q2cli/tests/test_cache_cli.py ............................... [ 14%] q2cli/tests/test_cli.py ................................................ [ 37%] ...... [ 40%] q2cli/tests/test_core.py ...................... [ 50%] q2cli/tests/test_dev.py ............. [ 56%] q2cli/tests/test_mystery_stew.py s [ 57%] q2cli/tests/test_tools.py .............................................. [ 79%] ..................................F...FF..F. [100%] =================================== FAILURES =================================== ______________________ TestReplay.test_replay_provenance _______________________ self = def test_replay_provenance(self): in_fp = os.path.join(self.tempdir, 'concated_ints.qza') out_fp = os.path.join(self.tempdir, 'rendered.txt') result = self.runner.invoke( tools, ['replay-provenance', '--in-fp', in_fp, '--out-fp', out_fp] ) > self.assertEqual(result.exit_code, 0) E AssertionError: 1 != 0 q2cli/tests/test_tools.py:1013: AssertionError ____________ TestReplay.test_replay_provenance_use_md_without_parse ____________ self = def test_replay_provenance_use_md_without_parse(self): in_fp = os.path.join(self.tempdir, 'outer_dir') out_fp = os.path.join(self.tempdir, 'rendered.txt') result = self.runner.invoke( tools, ['replay-provenance', '--in-fp', in_fp, '--out-fp', out_fp, '--no-parse-metadata', '--use-recorded-metadata'] ) self.assertEqual(result.exit_code, 1) self.assertIsInstance(result.exception, ValueError) > self.assertRegex(str(result.exception), 'Metadata not parsed for replay') E AssertionError: Regex didn't match: 'Metadata not parsed for replay' not found in 'The cli usage driver is not available in the current environment.' q2cli/tests/test_tools.py:1082: AssertionError ______________________ TestReplay.test_replay_supplement _______________________ self = def test_replay_supplement(self): in_fp = os.path.join(self.tempdir, 'concated_ints.qza') out_fp = os.path.join(self.tempdir, 'supplement.zip') result = self.runner.invoke( tools, ['replay-supplement', '--in-fp', in_fp, '--out-fp', out_fp] ) self.assertEqual(result.exit_code, 0) self.assertTrue(zipfile.is_zipfile(out_fp)) exp = { 'supplement/', 'supplement/python3_replay.py', 'supplement/cli_replay.sh', 'supplement/citations.bib' } with zipfile.ZipFile(out_fp, 'r') as zfh: > self.assertEqual(exp, set(zfh.namelist())) E AssertionError: Items in the first set but not the second: E 'supplement/cli_replay.sh' q2cli/tests/test_tools.py:1177: AssertionError _______________ TestReplay.test_replay_supplement_with_metadata ________________ self = def test_replay_supplement_with_metadata(self): in_fp = os.path.join(self.tempdir, 'int_seq_with_md.qza') out_fp = os.path.join(self.tempdir, 'supplement.zip') result = self.runner.invoke( tools, ['replay-supplement', '--in-fp', in_fp, '--out-fp', out_fp] ) self.assertEqual(result.exit_code, 0) self.assertTrue(zipfile.is_zipfile(out_fp)) exp = { 'supplement/', 'supplement/python3_replay.py', 'supplement/cli_replay.sh', 'supplement/citations.bib', 'supplement/recorded_metadata/', 'supplement/recorded_metadata/' 'dummy_plugin_identity_with_metadata_0/', 'supplement/recorded_metadata/' 'dummy_plugin_identity_with_metadata_0/metadata_0.tsv', } with zipfile.ZipFile(out_fp, 'r') as zfh: > self.assertEqual(exp, set(zfh.namelist())) E AssertionError: Items in the first set but not the second: E 'supplement/cli_replay.sh' q2cli/tests/test_tools.py:1201: AssertionError =============================== warnings summary =============================== q2cli/tests/test_cache_cli.py:15 /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_cache_cli.py:15: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources .pybuild/cpython3_3.11/build/q2cli/tests/test_cli.py::CliTests::test_run_deprecated_gets_warning_msg /usr/lib/python3/dist-packages/qiime2/sdk/action.py:327: FutureWarning: This Method is deprecated and will be removed in a future version of this plugin. warn(self._build_deprecation_message(), .pybuild/cpython3_3.11/build/q2cli/tests/test_cli.py::TestCollectionSupport::test_directory_with_non_artifacts /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/util.py:417: UserWarning: The directory /tmp/qiime2-q2cli-test-temp-y20xo_xd/in does not contain a .order file. The files will be read into the collection in the order the filesystem provides them in. warnings.warn(f'The directory {fp} does not contain a .order file. ' .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee2f22a8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee2f2528> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee2f2618> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee2f26b8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee0b72f8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee0131b8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee006de8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_build_action_usage_cli /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xeec96bb8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_replay_from_provdag_ns_collision /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xeecf56b8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::ReplayCLIUsageTests::test_replay_optional_param_is_none /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xeec904d8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xedf0eb18> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xedf0ea78> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xedf0eac8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee006578> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee2f2938> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xef641c08> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_fp /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee2be168> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_provdag /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee0ffac8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_core.py::WriteReproducibilitySupplementTests::test_replay_supplement_from_provdag /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee0ff528> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestReplay::test_replay_provenance_python /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xededccf8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestReplay::test_replay_provenance_recurse /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xedff4ca8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestReplay::test_replay_supplement /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xef6b04d8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestReplay::test_replay_supplement_no_metadata_dump /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xef6b0578> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestReplay::test_replay_supplement_with_metadata /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xee2ecd98> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( .pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py::TestReplay::test_replay_supplement_zipfile /usr/lib/python3/dist-packages/networkx/utils/decorators.py:1254: FutureWarning: Pass filter_node=. at 0xeecc52f8> as keyword args. From NetworkX version 3.4 passing these as positional arguments will result in an error warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED q2cli/tests/test_tools.py::TestReplay::test_replay_provenance - Assert... FAILED q2cli/tests/test_tools.py::TestReplay::test_replay_provenance_use_md_without_parse FAILED q2cli/tests/test_tools.py::TestReplay::test_replay_supplement - Assert... FAILED q2cli/tests/test_tools.py::TestReplay::test_replay_supplement_with_metadata ============ 4 failed, 206 passed, 1 skipped, 30 warnings in 35.59s ============ E: pybuild pybuild:389: test: plugin distutils failed with: exit code=1: cd /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build; python3.11 -m pytest --ignore=q2cli/tests/test_usage.py dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.11 3.12" returned exit code 13 make[1]: Leaving directory '/build/reproducible-path/q2cli-2024.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/q2cli/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.11 setup.py install --root /build/reproducible-path/q2cli-2024.5.0/debian/q2cli running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing q2cli.egg-info/PKG-INFO writing dependency_links to q2cli.egg-info/dependency_links.txt writing entry points to q2cli.egg-info/entry_points.txt writing top-level names to q2cli.egg-info/top_level.txt reading manifest file 'q2cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'q2cli.egg-info/SOURCES.txt' /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'q2cli.core.assets' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'q2cli.core.assets' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'q2cli.core.assets' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'q2cli.core.assets' to be distributed and are already explicitly excluding 'q2cli.core.assets' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'q2cli.tests.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'q2cli.tests.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'q2cli.tests.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'q2cli.tests.data' to be distributed and are already explicitly excluding 'q2cli.tests.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) UPDATING /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/_version.py set /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/_version.py to '2024.5.0' running build_scripts running install_lib creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11 creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/completion.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/config.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/__pycache__/completion.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/__pycache__/cache.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/__pycache__/usage.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/__pycache__/state.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/__pycache__/config.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__pycache__ creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/assets copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/assets/copyright_note.txt -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/assets copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/assets/cli_howto.txt -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/assets copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/state.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/usage.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/cache.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/core/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/info.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/__pycache__/tools.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/__pycache__/info.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/__pycache__/dev.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/dev.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/builtin/tools.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/__pycache__/__main__.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/__pycache__/_version.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/__pycache__/util.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/__pycache__/commands.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__pycache__ creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_tools.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__pycache__/test_cache_cli.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__pycache__/test_mystery_stew.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__pycache__/test_cli.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__pycache__/test_dev.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__pycache__/test_tools.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__pycache__/test_core.cpython-311-pytest-8.2.2.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_dev.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_mystery_stew.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/data copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/data/mapping_config.toml -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/data copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/data/concatenated_ints.qza -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/data copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_core.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_usage.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_cache_cli.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/tests/test_cli.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/__main__.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/__pycache__/command.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/__pycache__/__init__.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/__pycache__/parser.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/__pycache__/type.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/__pycache__/option.cpython-311.pyc -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/__pycache__ copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/type.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/option.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/command.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/click/parser.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/util.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/commands.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/__init__.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/q2cli/_version.py -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/runinfo creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/runinfo/000 copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/runinfo/000/parsl.log -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/runinfo/000 creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/runinfo/001 copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/runinfo/001/parsl.log -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/runinfo/001 creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/runinfo/002 copying /build/reproducible-path/q2cli-2024.5.0/.pybuild/cpython3_3.11/build/runinfo/002/parsl.log -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/runinfo/002 byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/completion.py to completion.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/config.py to config.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/state.py to state.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/usage.py to usage.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/cache.py to cache.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/core/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/info.py to info.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/dev.py to dev.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/builtin/tools.py to tools.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/test_tools.py to test_tools.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/test_dev.py to test_dev.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/test_mystery_stew.py to test_mystery_stew.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/test_core.py to test_core.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/test_usage.py to test_usage.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/test_cache_cli.py to test_cache_cli.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/tests/test_cli.py to test_cli.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__main__.py to __main__.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/type.py to type.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/option.py to option.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/command.py to command.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/click/parser.py to parser.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/util.py to util.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/commands.py to commands.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli/_version.py to _version.cpython-311.pyc running install_egg_info Copying q2cli.egg-info to /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/lib/python3.11/dist-packages/q2cli-2024.5.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/bin copying build/scripts-3.11/tab-qiime -> /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/bin changing mode of /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/bin/tab-qiime to 755 Installing qiime script to /build/reproducible-path/q2cli-2024.5.0/debian/q2cli/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/q2cli-2024.5.0' debian/rules:28: warning: overriding recipe for target 'debian/control' debian/rules:17: warning: ignoring old recipe for target 'debian/control' dh_install mkdir -p debian/q2cli/usr/share/bash-completion/completions mv debian/q2cli/usr/bin/tab-qiime debian/q2cli/usr/share/bash-completion/completions/qiime chmod -x debian/q2cli/usr/share/bash-completion/completions/qiime find debian/q2cli -type f -name parsl.log -delete make[1]: Leaving directory '/build/reproducible-path/q2cli-2024.5.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package q2cli: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'q2cli' in '../q2cli_2024.5.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../q2cli_2024.5.0-1_i386.buildinfo dpkg-genchanges --build=binary -O../q2cli_2024.5.0-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/9445 and its subdirectories I: Current time: Tue Jul 29 16:25:27 -12 2025 I: pbuilder-time-stamp: 1753849527 Wed Jun 26 22:02:29 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom07-i386.debian.net. Wed Jun 26 22:02:29 UTC 2024 I: Preparing to do remote build '2' on infom07-i386.debian.net. Wed Jun 26 22:05:08 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. Wed Jun 26 22:05:08 UTC 2024 I: q2cli_2024.5.0-1_i386.changes: Format: 1.8 Date: Tue, 25 Jun 2024 03:52:20 +0200 Source: q2cli Binary: q2cli Architecture: all Version: 2024.5.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: q2cli - Click-based command line interface for QIIME 2 Closes: 1066085 Changes: q2cli (2024.5.0-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Make the build reproducible Closes: #1066085 . [ Michael R. Crusoe ] * Regenerate debian/control from debian/control.in (routine-update) * d/patches/configparser.patch: copy from qiime packaging * Only build for Python 3.11 until upstream catches up with Python 3.12. Checksums-Sha1: db93d7d15edd5142e2adc6b83f6c7161ca78c3ed 83204 q2cli_2024.5.0-1_all.deb 3e8e424ff7c41fe2e2a77b6d25a3655e85497982 7984 q2cli_2024.5.0-1_i386.buildinfo Checksums-Sha256: 05532b4a1b6d53ac9fb40a69076a85c0df0e62363bf8b2147c444811314b128c 83204 q2cli_2024.5.0-1_all.deb 20527dfc89782ae28cd873ef1a74149cd2af8b253f8619c604f9e8e948a219e2 7984 q2cli_2024.5.0-1_i386.buildinfo Files: 1ed4b544bccde81fe0a1dadb88c1262f 83204 science optional q2cli_2024.5.0-1_all.deb bdb1cb5b23c70677d7a2fd3ef6c95647 7984 science optional q2cli_2024.5.0-1_i386.buildinfo Wed Jun 26 22:05:10 UTC 2024 I: diffoscope 271 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_18-9704.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0nDFR9c2/q2cli_2024.5.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0nDFR9c2/q2cli_2024.5.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0nDFR9c2/q2cli_2024.5.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0nDFR9c2/b1/q2cli_2024.5.0-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.0nDFR9c2/b2/q2cli_2024.5.0-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.340s) 0.340s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 672ms CPU time consumed: 674ms Wed Jun 26 22:05:11 UTC 2024 I: diffoscope 271 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 26 22:05:11 UTC 2024 I: q2cli from unstable built successfully and reproducibly on i386. Wed Jun 26 22:05:13 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Jun 26 22:05:13 UTC 2024 I: Submitting 12K b1/q2cli_2024.5.0-1_i386.buildinfo.asc Wed Jun 26 22:05:13 UTC 2024 I: Submitting 12K b2/q2cli_2024.5.0-1_i386.buildinfo.asc Wed Jun 26 22:05:14 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 26 22:05:14 UTC 2024 I: Done submitting .buildinfo files. Wed Jun 26 22:05:14 UTC 2024 I: Removing signed q2cli_2024.5.0-1_i386.buildinfo.asc files: removed './b1/q2cli_2024.5.0-1_i386.buildinfo.asc' removed './b2/q2cli_2024.5.0-1_i386.buildinfo.asc'