Thu Oct 31 10:24:36 UTC 2024 I: starting to build q2-alignment/unstable/i386 on jenkins on '2024-10-31 10:24' Thu Oct 31 10:24:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_14/49548/console.log Thu Oct 31 10:24:36 UTC 2024 I: Downloading source for unstable/q2-alignment=2024.5.0-1 --2024-10-31 10:24:36-- http://deb.debian.org/debian/pool/main/q/q2-alignment/q2-alignment_2024.5.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) [text/prs.lines.tag] Saving to: ‘q2-alignment_2024.5.0-1.dsc’ 0K .. 100% 237M=0s 2024-10-31 10:24:36 (237 MB/s) - ‘q2-alignment_2024.5.0-1.dsc’ saved [2221/2221] Thu Oct 31 10:24:36 UTC 2024 I: q2-alignment_2024.5.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: q2-alignment Binary: q2-alignment Architecture: all Version: 2024.5.0-1 Maintainer: Debian Med Packaging Team Uploaders: Liubov Chuprikova , Steffen Moeller Homepage: https://qiime2.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/q2-alignment Vcs-Git: https://salsa.debian.org/med-team/q2-alignment.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest-cov Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-skbio, python3-pytest-cov, qiime (>= 2024.5), q2-types (>= 2024.5), mafft Package-List: q2-alignment deb science optional arch=all Checksums-Sha1: 45b99ac71ce3da427dc6a77488ab46e1ef613361 306640 q2-alignment_2024.5.0.orig.tar.xz fb5bab6175e6aae3b051f7a5c5a383efa1fc77a8 6808 q2-alignment_2024.5.0-1.debian.tar.xz Checksums-Sha256: b1cccb51aa385793b9168ffd8c03ae2916e2ee76ea488ab12badcfa73569d99b 306640 q2-alignment_2024.5.0.orig.tar.xz 709a2294cd35ce5706066b56372156d63b0f2c5f2d0366902264f1cb0daefe78 6808 q2-alignment_2024.5.0-1.debian.tar.xz Files: 558a4a17f2aea8574edc7e4d0129546a 306640 q2-alignment_2024.5.0.orig.tar.xz e99389b3a3179865dd557cdaa4a423d3 6808 q2-alignment_2024.5.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmZ76QAACgkQPCZ2P2xn 5uIqaBAAgufUaC2g/inl0v30VZTHWZIdkdrsZjzi1z4KmmM5CXSHxWCuDAg3DDs6 vJrfztwAGW6zT22VnLBO7Uy4V4PylVimTo3BZjh46Ur5dpkLAHnI1eYlvihomqmB 1zkr8qitlzpdkrpMcZxmIrgELT9nDYYoR1f+eFwUbNxaXmjSRRQle8i7Nna1W5wx Pp9/McOt4YrwQs5HN3TqR2E+myPTztKM54NtnAAVUp09Cj8S04ycSAEPzOJZnBpl VtDZPLAra5dMqSytY8iVipvriQIrvvT2nS2vsHouzR4rz086QnziPdmcGqxHpdZP tWNR1W1b2AdLtJ6xUtNhGCdln++bc+PmfCwT7PFCDiGWoc7kA4rbuBoFYUqcBgrn WSEBRqrt1ZHLz6ynuUiaZphnkVcEVcriY/MB8Nenae+fz6crd2Qpkqe19PxChK/W zlmxZf+IqCbfKNslyfZigBLcE8W64qKVKsPcx/dQpsIwbCoSXNnJZdIAv4MoEdH+ 8PtO7ibYaVqd0nW+qQQxl08d101yQXuFLsBjVG1JkROZaUZIIVQD7jnYAXWbmmOc td7swxReJaCZoRf6xNxCu2iJCuXdvq63bnuN41crpKiI1qGgCucV9lwhkKsdnNDd 2hZ5zxeCNpqmBPrZqf/pKArCqQwJ3Js3kbbynv6ql82S/yCWNFM= =jlMZ -----END PGP SIGNATURE----- Thu Oct 31 10:24:36 UTC 2024 I: Checking whether the package is not for us Thu Oct 31 10:24:36 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Thu Oct 31 10:24:36 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Thu Oct 31 10:24:50 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 3 04:47:37 -12 2025 I: pbuilder-time-stamp: 1764780457 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [q2-alignment_2024.5.0-1.dsc] I: copying [./q2-alignment_2024.5.0.orig.tar.xz] I: copying [./q2-alignment_2024.5.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jun 26 10:10:08 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./q2-alignment_2024.5.0-1.dsc: no acceptable signature found dpkg-source: info: extracting q2-alignment in q2-alignment-2024.5.0 dpkg-source: info: unpacking q2-alignment_2024.5.0.orig.tar.xz dpkg-source: info: unpacking q2-alignment_2024.5.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying configparser.patch dpkg-source: info: applying py.test-3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7824/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='fc7815517e784de283fcbdf584e5860f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7824' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FtmNaTeM/pbuilderrc_FCgi --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FtmNaTeM/b1 --logfile b1/build.log q2-alignment_2024.5.0-1.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7824/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-skbio, python3-pytest-cov, qiime (>= 2024.5), q2-types (>= 2024.5), mafft dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19955 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-cov; however: Package python3-pytest-cov is not installed. pbuilder-satisfydepends-dummy depends on qiime (>= 2024.5); however: Package qiime is not installed. pbuilder-satisfydepends-dummy depends on q2-types (>= 2024.5); however: Package q2-types is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libnsl2{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsodium23{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-coverage{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libwww-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2cli q2templates r-cran-plotly ruby wget 0 packages upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 71.4 MB of archives. After unpacking 347 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-skbio which is a virtual package and is not provided by any available package Depends: q2-types (>= 2024.5) but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-glyphicons-halflings{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} javascript-common{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-hotkeys{a} libjs-jquery-isonscreen{a} libjs-jquery-metadata{a} libjs-jquery-tablesorter{a} libjs-jquery-throttle-debounce{a} libjs-popper.js{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnorm1t64{a} libnsl2{a} libpgm-5.3-0t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsodium23{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libxslt1.1{a} libyaml-0-2{a} libzmq5{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} node-fortawesome-fontawesome-free{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-bibtexparser{a} python3-blinker{a} python3-certifi{a} python3-cffi-backend{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-coverage{a} python3-cryptography{a} python3-dateutil{a} python3-decorator{a} python3-dill{a} python3-filelock{a} python3-flask{a} python3-flask-sqlalchemy{a} python3-flufl.lock{a} python3-globus-sdk{a} python3-greenlet{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-jwt{a} python3-lxml{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-parsl{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-psutil{a} python3-public{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-cov{a} python3-requests{a} python3-setproctitle{a} python3-setuptools{a} python3-sqlalchemy{a} python3-tblib{a} python3-tomlkit{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-tzlocal{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3-zmq{a} python3.12{a} python3.12-minimal{a} qiime{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libwww-perl lynx node-jquery python3-asgiref python3-babel python3-bottleneck python3-bs4 python3-cssselect python3-dotenv python3-gdal python3-html5lib python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-openssl python3-pydot python3-pygments python3-pygraphviz python3-pyinotify python3-scipy python3-simplejson python3-sqlalchemy-ext python3-tables q2-demux q2-feature-classifier q2-feature-table q2-quality-filter q2cli q2templates r-cran-plotly ruby wget 0 packages upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 71.4 MB of archives. After unpacking 347 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7824 and its subdirectories Thu Oct 31 10:24:51 UTC 2024 W: No second build log, what happened? Thu Oct 31 10:24:51 UTC 2024 W: Downloading the build dependencies failed Thu Oct 31 10:24:51 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Thu Oct 31 10:24:51 UTC 2024 W: Network problems are automatically rescheduled after some hours.