Wed Nov 20 06:11:44 UTC 2024 I: starting to build python-cgecore/unstable/i386 on jenkins on '2024-11-20 06:11' Wed Nov 20 06:11:44 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_20/32551/console.log Wed Nov 20 06:11:44 UTC 2024 I: Downloading source for unstable/python-cgecore=1.5.6+ds-2 --2024-11-20 06:11:44-- http://deb.debian.org/debian/pool/main/p/python-cgecore/python-cgecore_1.5.6%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2148 (2.1K) [text/prs.lines.tag] Saving to: ‘python-cgecore_1.5.6+ds-2.dsc’ 0K .. 100% 305M=0s 2024-11-20 06:11:44 (305 MB/s) - ‘python-cgecore_1.5.6+ds-2.dsc’ saved [2148/2148] Wed Nov 20 06:11:44 UTC 2024 I: python-cgecore_1.5.6+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cgecore Binary: python3-cgecore Architecture: all Version: 1.5.6+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/genomicepidemiology/cge_core_module/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-cgecore Vcs-Git: https://salsa.debian.org/med-team/python-cgecore.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython Package-List: python3-cgecore deb python optional arch=all Checksums-Sha1: 468c6d2be57dfd1935f28426b4b37d039f8e3fb1 26276 python-cgecore_1.5.6+ds.orig.tar.xz b82660b593cabd52eda5aab055c15d46d9b8c409 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz Checksums-Sha256: c8314e290afb2dea6789fa3baea08d26166c967ec0f49c402eae9b1bf9e79ad2 26276 python-cgecore_1.5.6+ds.orig.tar.xz 5930364ed1c3c6210f1ad93ed6ebe80b21d29fe6f55c14896948bb6c3a504eeb 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz Files: baed19076f0ec4a42eb2d68800d4128f 26276 python-cgecore_1.5.6+ds.orig.tar.xz 8b5b7eacb24c932d4ebbda1ff0cdb593 2824 python-cgecore_1.5.6+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmc8/nMRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBovVw/8CjoCNziCnjq8PnEQ90kmLjrQHC2BoJI4 YrtFXbzt5SU3LkmMhCbD5WvaMhohLbxlp0B+BN+17hefDLPxn/zT9fSjAZCcDdFw T5/l1Pfioa6BQM4AE8E7u/5ijLNUt4VEdTKkp2dreIu/va9wzZKXAWp7qSzEEF5f nS5M8JvCDABd1vTJJxOwk3w1X7twgYvV2jlrkGrDymkkbZ1BBxRYH4V4uYNGISjF HaiUtPj9qD6daPp3dRyAF/4McDTgGy0kCBqNTGh53z22SN3fgESvlrsLxxltlACL O0n+/pF1zMb3nLgB4G4KL4L6qtF+oZIk2L3yUYAO1jI04fCqKxyVXBShCLd3mc+9 yiYRmbAjHep6z4HoHTD/zVysuGN78k7XhXjww379/k00YBRT8a7widrvaPzTjLzF S7Lfi/g5hQSYb4K5gLnVxedNYxFwySiscqSyp6nTqN9K2Zgul5qZCS0dFx5HTLqn yu/YbBtwd0NRsM2CEQocceF4xzOBpbyJJj3I/JjAo6lZQ6oGPFvWi+vkYA8ILVGM 4HFEABv07j0WSTEELDRM/1LpNpVM8CojbCUexBSobho1qhHqEICoo7LsswPr2LkS wfTg+ME0FM3hdBHkfsmvyRo6D8jofxEsvqp+L/kBUuqyo2HMNe7cDsgwFBwyoIIe ga/1CdNnlFQ= =BXSl -----END PGP SIGNATURE----- Wed Nov 20 06:11:44 UTC 2024 I: Checking whether the package is not for us Wed Nov 20 06:11:44 UTC 2024 I: Starting 1st build on remote node infom08-i386.debian.net. Wed Nov 20 06:11:44 UTC 2024 I: Preparing to do remote build '1' on infom08-i386.debian.net. Wed Nov 20 06:12:56 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 23 00:34:46 -12 2025 I: pbuilder-time-stamp: 1766493286 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-cgecore_1.5.6+ds-2.dsc] I: copying [./python-cgecore_1.5.6+ds.orig.tar.xz] I: copying [./python-cgecore_1.5.6+ds-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 19 21:09:07 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-cgecore_1.5.6+ds-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cgecore in python-cgecore-1.5.6+ds dpkg-source: info: unpacking python-cgecore_1.5.6+ds.orig.tar.xz dpkg-source: info: unpacking python-cgecore_1.5.6+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7470/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e59c57e00fec409c8d024e46abc97d08' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7470' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iOKodnmt/pbuilderrc_F88a --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iOKodnmt/b1 --logfile b1/build.log python-cgecore_1.5.6+ds-2.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7470/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 117 newly installed, 0 to remove and 0 not upgraded. Need to get 61.8 MB of archives. After unpacking 228 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-3 [814 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-3 [2236 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1+b1 [23.4 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 12 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-3 [1964 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-8 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 75.2.0-1 [731 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libfontenc1 i386 1:1.1.8-1+b1 [23.4 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.44-2 [288 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23.1 [216 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 xfonts-utils i386 1:7.7+7 [95.1 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 75 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-1.1+b1 [318 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3+b1 [143 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-1.1+b1 [402 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b2 [52.6 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b2 [28.9 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.15-1 [72.4 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-8 [735 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.82.2-3 [1571 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.0.1-1 [503 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3+b1 [2196 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libopenjp2-7 i386 2.5.0-2+b4 [210 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libraqm0 i386 0.10.1-1+b2 [14.8 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.4.0-0.1+b1 [113 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.4.0-0.1+b1 [322 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.4.0-0.1+b1 [111 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.4.0-0.1+b1 [125 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-12 [4752 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 python3-pil i386 10.4.0-1+b1 [513 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 python3-cairo i386 1.26.1-2+b1 [131 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 python3-freetype all 2.5.1-1 [89.3 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 114 http://deb.debian.org/debian unstable/main i386 python3-reportlab all 4.2.5-1 [1117 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 xml-core all 0.19 [20.1 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 w3c-sgml-lib all 1.3-3 [273 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 python3-biopython i386 1.84+dfsg-4+b1 [1648 kB] Fetched 61.8 MB in 2s (27.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-3) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_i386.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:i386 (3.12.7-3) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20272 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_i386.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_i386.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21334 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_i386.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sgml-base. 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Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../50-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../51-xfonts-utils_1%3a7.7+7_i386.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. Preparing to unpack .../52-fonts-urw-base35_20200910-8_all.deb ... Unpacking fonts-urw-base35 (20200910-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../53-fontconfig-config_2.15.0-1.1+b1_i386.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../54-libblas3_3.12.0-3+b1_i386.deb ... Unpacking libblas3:i386 (3.12.0-3+b1) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../55-libfontconfig1_2.15.0-1.1+b1_i386.deb ... Unpacking libfontconfig1:i386 (2.15.0-1.1+b1) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../56-libpixman-1-0_0.44.0-3_i386.deb ... Unpacking libpixman-1-0:i386 (0.44.0-3) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../57-libxau6_1%3a1.0.11-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../58-libxdmcp6_1%3a1.1.5-1_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../59-libxcb1_1.17.0-2+b1_i386.deb ... Unpacking libxcb1:i386 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../60-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:i386. 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Selecting previously unselected package libimagequant0:i386. Preparing to unpack .../73-libimagequant0_2.18.0-1+b2_i386.deb ... Unpacking libimagequant0:i386 (2.18.0-1+b2) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../74-libjbig0_2.1-6.1+b2_i386.deb ... Unpacking libjbig0:i386 (2.1-6.1+b2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../75-libjpeg62-turbo_1%3a2.1.5-3+b1_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../76-liblapack3_3.12.0-3+b1_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3+b1) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../77-liblcms2-2_2.16-2_i386.deb ... Unpacking liblcms2-2:i386 (2.16-2) ... Selecting previously unselected package liblerc4:i386. Preparing to unpack .../78-liblerc4_4.0.0+ds-5_i386.deb ... Unpacking liblerc4:i386 (4.0.0+ds-5) ... Selecting previously unselected package libopenjp2-7:i386. Preparing to unpack .../79-libopenjp2-7_2.5.0-2+b4_i386.deb ... Unpacking libopenjp2-7:i386 (2.5.0-2+b4) ... Selecting previously unselected package libraqm0:i386. Preparing to unpack .../80-libraqm0_0.10.1-1+b2_i386.deb ... Unpacking libraqm0:i386 (0.10.1-1+b2) ... Selecting previously unselected package libsharpyuv0:i386. Preparing to unpack .../81-libsharpyuv0_1.4.0-0.1+b1_i386.deb ... Unpacking libsharpyuv0:i386 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:i386. Preparing to unpack .../82-libwebp7_1.4.0-0.1+b1_i386.deb ... Unpacking libwebp7:i386 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:i386. Preparing to unpack .../83-libtiff6_4.5.1+git230720-5_i386.deb ... Unpacking libtiff6:i386 (4.5.1+git230720-5) ... Selecting previously unselected package libwebpdemux2:i386. Preparing to unpack .../84-libwebpdemux2_1.4.0-0.1+b1_i386.deb ... Unpacking libwebpdemux2:i386 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebpmux3:i386. Preparing to unpack .../85-libwebpmux3_1.4.0-0.1+b1_i386.deb ... Unpacking libwebpmux3:i386 (1.4.0-0.1+b1) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../86-python3-numpy_1%3a1.26.4+ds-12_i386.deb ... Unpacking python3-numpy (1:1.26.4+ds-12) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../87-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-pil:i386. Preparing to unpack .../88-python3-pil_10.4.0-1+b1_i386.deb ... Unpacking python3-pil:i386 (10.4.0-1+b1) ... Selecting previously unselected package python3-cairo. Preparing to unpack .../89-python3-cairo_1.26.1-2+b1_i386.deb ... Unpacking python3-cairo (1.26.1-2+b1) ... Selecting previously unselected package python3-freetype. 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Setting up libgraphite2-3:i386 (1.3.14-2+b1) ... Setting up liblcms2-2:i386 (2.16-2) ... Setting up libpixman-1-0:i386 (0.44.0-3) ... Setting up libsharpyuv0:i386 (1.4.0-0.1+b1) ... Setting up libxau6:i386 (1:1.0.11-1) ... Setting up libxdmcp6:i386 (1:1.1.5-1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libxcb1:i386 (1.17.0-2+b1) ... Setting up libicu72:i386 (72.1-5+b1) ... Setting up liblerc4:i386 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:i386 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:i386 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:i386 (1.17.0-2+b1) ... Setting up libcom-err2:i386 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:i386 (2.1-6.1+b2) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 23 12:35:08 UTC 2025. Universal Time is now: Tue Dec 23 12:35:08 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:i386 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:i386 (2.82.2-3) ... No schema files found: doing nothing. Setting up libblas3:i386 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:i386 (1.0.15-1) ... Setting up libimagequant0:i386 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libgfortran5:i386 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:i386 (1.4.0-0.1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:i386 (4.5.1+git230720-5) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up libopenjp2-7:i386 (2.5.0-2+b4) ... Setting up libx11-6:i386 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up libkrb5-3:i386 (1.21.3-3) ... Setting up libwebpmux3:i386 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:i386 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:i386 (1.4.0-0.1+b1) ... Setting up libxext6:i386 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:i386 (10.0.1-1) ... Setting up libfontconfig1:i386 (2.15.0-1.1+b1) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.18.2-2) ... Setting up libraqm0:i386 (0.10.1-1+b2) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:i386 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:i386 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-pil:i386 (10.4.0-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cgecore-1.5.6+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cgecore_1.5.6+ds-2_source.changes dpkg-buildpackage: info: source package python-cgecore dpkg-buildpackage: info: source version 1.5.6+ds-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf cgecore.egg-info make[1]: Leaving directory '/build/reproducible-path/python-cgecore-1.5.6+ds' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore copying cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster copying cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo copying cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build; python3.12 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-cgecore/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/species.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gramstain.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_neg.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/organisminfo/gram_pos.txt -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cgefinder.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/utility.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/argumentparsing.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__pycache__/cmdline.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/argumentparsing.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/alignment.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/utility.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/cmdline.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster creating /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__pycache__/blaster.cpython-312.pyc -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__pycache__ copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/run_blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/blaster.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster copying /build/reproducible-path/python-cgecore-1.5.6+ds/.pybuild/cpython3_3.12_cgecore/build/cgecore/blaster/__init__.py -> /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/gramstain.py to gramstain.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/organisminfo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cgefinder.py to cgefinder.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/argumentparsing.py to argumentparsing.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/utility.py to utility.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/cmdline.py to cmdline.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/run_blaster.py to run_blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/blaster.py to blaster.cpython-312.pyc byte-compiling /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore/blaster/__init__.py to __init__.cpython-312.pyc running install_egg_info running egg_info creating cgecore.egg-info writing cgecore.egg-info/PKG-INFO writing dependency_links to cgecore.egg-info/dependency_links.txt writing top-level names to cgecore.egg-info/top_level.txt writing manifest file 'cgecore.egg-info/SOURCES.txt' reading manifest file 'cgecore.egg-info/SOURCES.txt' writing manifest file 'cgecore.egg-info/SOURCES.txt' Copying cgecore.egg-info to /build/reproducible-path/python-cgecore-1.5.6+ds/debian/python3-cgecore/usr/lib/python3.12/dist-packages/cgecore-1.5.6.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cgecore' in '../python3-cgecore_1.5.6+ds-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cgecore_1.5.6+ds-2_i386.buildinfo dpkg-genchanges --build=binary -O../python-cgecore_1.5.6+ds-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7470 and its subdirectories I: Current time: Tue Dec 23 00:35:55 -12 2025 I: pbuilder-time-stamp: 1766493355 Wed Nov 20 06:12:57 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom07-i386.debian.net. Wed Nov 20 06:12:57 UTC 2024 I: Preparing to do remote build '2' on infom07-i386.debian.net. Wed Nov 20 06:16:33 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. Wed Nov 20 06:16:33 UTC 2024 I: python-cgecore_1.5.6+ds-2_i386.changes: Format: 1.8 Date: Tue, 19 Nov 2024 21:23:35 +0100 Source: python-cgecore Binary: python3-cgecore Architecture: all Version: 1.5.6+ds-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-cgecore - Python3 module for the Center for Genomic Epidemiology Closes: 1084632 1085895 Changes: python-cgecore (1.5.6+ds-2) unstable; urgency=medium . * Team upload. * Patch out regexp that causes SyntaxWarning's (Closes: #1085895) * Patch out usage of "pipes" module removed from Py3.13 (Closes: #1084632) * Use dh-sequence-python3 Checksums-Sha1: adeed18f7c915c8a2e22664079b6f7cf21f2bfe1 7404 python-cgecore_1.5.6+ds-2_i386.buildinfo b7990b8d36e8bc63cb9b84b0b5d06ebefaeccea9 28760 python3-cgecore_1.5.6+ds-2_all.deb Checksums-Sha256: c62c7b68fd842bf98d7c79161a879ba0aaacfd4d0596f29b07919ef90d95664e 7404 python-cgecore_1.5.6+ds-2_i386.buildinfo 77ac98abaa0b129a6ec005194ed0bab3c51d5167880199448f4a9d704e8ac215 28760 python3-cgecore_1.5.6+ds-2_all.deb Files: d3221a14ca28f0af327eba68c6ac42f7 7404 python optional python-cgecore_1.5.6+ds-2_i386.buildinfo a82fbabe83c16ddaddafbeff5f98c308 28760 python optional python3-cgecore_1.5.6+ds-2_all.deb Wed Nov 20 06:16:35 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_20-32551.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.iOKodnmt/python-cgecore_1.5.6+ds-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.iOKodnmt/python-cgecore_1.5.6+ds-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.iOKodnmt/python-cgecore_1.5.6+ds-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.iOKodnmt/b1/python-cgecore_1.5.6+ds-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.iOKodnmt/b2/python-cgecore_1.5.6+ds-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.451s) 0.451s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.015s) 0.015s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 833ms CPU time consumed: 812ms Wed Nov 20 06:16:36 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Wed Nov 20 06:16:36 UTC 2024 I: python-cgecore from unstable built successfully and reproducibly on i386. Wed Nov 20 06:16:37 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Nov 20 06:16:37 UTC 2024 I: Submitting 12K b1/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc Wed Nov 20 06:16:39 UTC 2024 I: Submitting 12K b2/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc Wed Nov 20 06:16:40 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Nov 20 06:16:40 UTC 2024 I: Done submitting .buildinfo files. Wed Nov 20 06:16:40 UTC 2024 I: Removing signed python-cgecore_1.5.6+ds-2_i386.buildinfo.asc files: removed './b1/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc' removed './b2/python-cgecore_1.5.6+ds-2_i386.buildinfo.asc'