Fri Sep 27 23:20:22 UTC 2024 I: starting to build opentsne/unstable/i386 on jenkins on '2024-09-27 23:20' Fri Sep 27 23:20:22 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/38104/console.log Fri Sep 27 23:20:22 UTC 2024 I: Downloading source for unstable/opentsne=1.0.2-1 --2024-09-27 23:20:22-- http://deb.debian.org/debian/pool/main/o/opentsne/opentsne_1.0.2-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2349 (2.3K) [text/prs.lines.tag] Saving to: ‘opentsne_1.0.2-1.dsc’ 0K .. 100% 290M=0s 2024-09-27 23:20:23 (290 MB/s) - ‘opentsne_1.0.2-1.dsc’ saved [2349/2349] Fri Sep 27 23:20:23 UTC 2024 I: opentsne_1.0.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: opentsne Binary: python3-opentsne Architecture: any Version: 1.0.2-1 Maintainer: Debian PaN Maintainers Uploaders: Debian Science Maintainers , Picca Frédéric-Emmanuel , Homepage: https://github.com/pavlin-policar/openTSNE Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/opentsne Vcs-Git: https://salsa.debian.org/science-team/opentsne.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest, python3-pytest-runner Build-Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn Package-List: python3-opentsne deb python optional arch=any Checksums-Sha1: 6c3dba6ffa253e6d0666c6d2b3755cd3bdea04cf 22107860 opentsne_1.0.2.orig.tar.gz bffea1f39062fbf448208a0159fb6f13a694a2c9 4776 opentsne_1.0.2-1.debian.tar.xz Checksums-Sha256: 41d34d969b26649a1f3a3778a1b874b690bfbe71536c0d436fe35318bf3aedae 22107860 opentsne_1.0.2.orig.tar.gz 0c78919b402b5bc984f09403eeb8b45505d2aed869dd689331b203831ecfea07 4776 opentsne_1.0.2-1.debian.tar.xz Files: f8431e0c31572599f673433506ad7eea 22107860 opentsne_1.0.2.orig.tar.gz 9aa7e076b09671ad37af7357c9e35f3b 4776 opentsne_1.0.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtBU2D1kett1zr/uD0w3s0lmTIvwFAmb2//MACgkQ0w3s0lmT Ivz7jQ/+MzUNZbi4Xw5SuUKSwj0GYb6TK2n+QAXbNwD1N8m00RL4Cf7tgzmJ0+Rb cLEWP8mp6lpKCmFE58yRSsLDdhcMsxsN4scqC/thHZNtFINNwGAjkSViTzF+3r5S AWs6J3ucl6Hc/ufgmwVfy1NX9yBoqNFR5KKwlAtNGGj8FrFOvW0wj8QhE5Ztaf68 JWaSQbLrupCsnkCwhLAOFlKzMiGpTcg4eQV1laLGeJYOZxOuQRyORMCUetqfOkmr b2aAvdgMSV1o5yE2LNUMrdvc86pJvEePxbA/bCeuGuSekr9vryrMfkEtH3BK02f3 zkzAON193iUtUe3Kasxdh+g0aCPdfFYAJN9p/rAPHoKT+I7vtpaCrw7fTuspfUAq ftZRrdpjmbyNkwEEQPz6IN9Pt92CwOUurHXXOOfy126ue5QWBPhYjXrxx24B4RHe DsM23x7FyDeDqF0cOxUYzhLLieK0kXAR5hQN6Hm/esjimyhdxweZfQ2A5t6sO7oi jFsSw2SGM/Deay2WtEYdApT5aDfM2jUMYGy+uRHoEzv1WbG2B9tTh/Vi5GALocSY Z1vtw6Ex8CDJ58dnrDdVoeDJHnI5MqU8POtcV+YrKI0MFnYWXMNeGVIlBU47js8O 6b/wXTAARJUim+hly1KhqU0OwYdMT1aKjMqz3eqIqE9iWMBxV08= =UuNg -----END PGP SIGNATURE----- Fri Sep 27 23:20:23 UTC 2024 I: Checking whether the package is not for us Fri Sep 27 23:20:23 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Sep 27 23:20:23 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Sep 27 23:23:44 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 17:43:21 -12 2025 I: pbuilder-time-stamp: 1761889401 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [opentsne_1.0.2-1.dsc] I: copying [./opentsne_1.0.2.orig.tar.gz] I: copying [./opentsne_1.0.2-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Sep 27 18:56:51 2024 gpgv: using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-1.dsc: no acceptable signature found dpkg-source: info: extracting opentsne in opentsne-1.0.2 dpkg-source: info: unpacking opentsne_1.0.2.orig.tar.gz dpkg-source: info: unpacking opentsne_1.0.2-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-one-test-on-i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/59711/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='b6fe91ab4be4460ea2e17ba5acaf4fa0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='59711' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rWuXQgMi/pbuilderrc_nmhS --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rWuXQgMi/b1 --logfile b1/build.log opentsne_1.0.2-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-25-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.106-3 (2024-08-26) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/59711/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19774 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-decorator{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-runner{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx psmisc python3-matplotlib python3-pil python3-psutil python3-pygments python3-simplejson wget 0 packages upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 78.7 MB of archives. After unpacking 341 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.6-1 [813 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.6-1 [2242 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 12 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.6-1 [1961 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-5 [65.6 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-5 [875 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-8 [102 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 cython3 i386 3.0.11+dfsg-1 [2429 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.4.0-1 [63.7 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.0.2-1 [11.7 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.20.2-1 [10.3 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20240824 [109 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 libblas3 i386 3.12.0-3 [140 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libexpat1-dev i386 2.6.3-1 [164 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libfftw3-double3 i386 3.3.10-1+b3 [635 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libfftw3-long3 i386 3.3.10-1+b3 [340 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libfftw3-quad3 i386 3.3.10-1+b3 [1798 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libfftw3-single3 i386 3.3.10-1+b3 [643 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libfftw3-bin i386 3.3.10-1+b3 [49.8 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libfftw3-dev i386 3.3.10-1+b3 [3199 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libgfortran5 i386 14.2.0-5 [735 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b1 [29.1 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libpython3.12t64 i386 3.12.6-1 [2168 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libpython3.12-dev i386 3.12.6-1 [5284 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libpython3-dev i386 3.12.6-1 [9956 B] Get: 84 http://deb.debian.org/debian unstable/main i386 libpython3-all-dev i386 3.12.6-1 [1068 B] Get: 85 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.1-1 [45.8 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 python3-pyproject-hooks all 1.1.0-2 [11.3 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 python3-toml all 0.10.2-1 [16.2 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 python3-wheel all 0.44.0-2 [53.4 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 python3-build all 1.2.2-1 [36.0 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 pybuild-plugin-pyproject all 6.20240824 [11.2 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.12.6-1 [1040 B] Get: 93 http://deb.debian.org/debian unstable/main i386 python3.12-dev i386 3.12.6-1 [506 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 python3-dev i386 3.12.6-1 [26.1 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 python3-all-dev i386 3.12.6-1 [1068 B] Get: 96 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 98 http://deb.debian.org/debian unstable/main i386 python3-joblib all 1.3.2-3 [216 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 python3-numpy i386 1:1.26.4+ds-11 [4299 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 python3-pytest all 8.3.3-1 [249 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 python3-pytest-runner all 2.11.1-4 [8432 B] Get: 103 http://deb.debian.org/debian unstable/main i386 python3-scipy i386 1.13.1-5 [16.6 MB] Get: 104 http://deb.debian.org/debian unstable/main i386 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 python3-sklearn-lib i386 1.4.2+dfsg-6 [3400 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 python3-sklearn all 1.4.2+dfsg-6 [2248 kB] Fetched 78.7 MB in 2s (36.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19774 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.6-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_i386.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:i386 (3.12.6-1) ... Setting up libexpat1:i386 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20094 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_i386.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21166 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package libproc2-0:i386. 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Selecting previously unselected package libblas3:i386. Preparing to unpack .../44-libblas3_3.12.0-3_i386.deb ... Unpacking libblas3:i386 (3.12.0-3) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../45-libexpat1-dev_2.6.3-1_i386.deb ... Unpacking libexpat1-dev:i386 (2.6.3-1) ... Selecting previously unselected package libfftw3-double3:i386. Preparing to unpack .../46-libfftw3-double3_3.3.10-1+b3_i386.deb ... Unpacking libfftw3-double3:i386 (3.3.10-1+b3) ... Selecting previously unselected package libfftw3-long3:i386. Preparing to unpack .../47-libfftw3-long3_3.3.10-1+b3_i386.deb ... Unpacking libfftw3-long3:i386 (3.3.10-1+b3) ... Selecting previously unselected package libfftw3-quad3:i386. Preparing to unpack .../48-libfftw3-quad3_3.3.10-1+b3_i386.deb ... Unpacking libfftw3-quad3:i386 (3.3.10-1+b3) ... Selecting previously unselected package libfftw3-single3:i386. Preparing to unpack .../49-libfftw3-single3_3.3.10-1+b3_i386.deb ... Unpacking libfftw3-single3:i386 (3.3.10-1+b3) ... Selecting previously unselected package libfftw3-bin. Preparing to unpack .../50-libfftw3-bin_3.3.10-1+b3_i386.deb ... Unpacking libfftw3-bin (3.3.10-1+b3) ... Selecting previously unselected package libfftw3-dev:i386. Preparing to unpack .../51-libfftw3-dev_3.3.10-1+b3_i386.deb ... Unpacking libfftw3-dev:i386 (3.3.10-1+b3) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../52-libgfortran5_14.2.0-5_i386.deb ... Unpacking libgfortran5:i386 (14.2.0-5) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../53-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../54-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../55-libjs-sphinxdoc_7.4.7-3_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-3) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../56-liblapack3_3.12.0-3_i386.deb ... Unpacking liblapack3:i386 (3.12.0-3) ... Selecting previously unselected package liblbfgsb0:i386. Preparing to unpack .../57-liblbfgsb0_3.0+dfsg.4-1+b1_i386.deb ... Unpacking liblbfgsb0:i386 (3.0+dfsg.4-1+b1) ... Selecting previously unselected package libpython3.12t64:i386. Preparing to unpack .../58-libpython3.12t64_3.12.6-1_i386.deb ... Unpacking libpython3.12t64:i386 (3.12.6-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../59-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package libpython3.12-dev:i386. Preparing to unpack .../60-libpython3.12-dev_3.12.6-1_i386.deb ... Unpacking libpython3.12-dev:i386 (3.12.6-1) ... 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Preparing to unpack .../84-python3-sklearn_1.4.2+dfsg-6_all.deb ... Unpacking python3-sklearn (1.4.2+dfsg-6) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-3) ... Setting up libfftw3-single3:i386 (3.3.10-1+b3) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up libfftw3-long3:i386 (3.3.10-1+b3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:i386 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up libkrb5support0:i386 (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 31 05:43:44 UTC 2025. Universal Time is now: Fri Oct 31 05:43:44 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.6.3-1) ... Setting up libfftw3-quad3:i386 (3.3.10-1+b3) ... Setting up libproc2-0:i386 (2:4.0.4-5) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:i386 (1.21.3-3) ... Setting up libfftw3-double3:i386 (3.3.10-1+b3) ... Setting up libgfortran5:i386 (14.2.0-5) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-5) ... Setting up netbase (6.4) ... Setting up libkrb5-3:i386 (1.21.3-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/opentsne-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../opentsne_1.0.2-1_source.changes dpkg-buildpackage: info: source package opentsne dpkg-buildpackage: info: source version 1.0.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Roland Mas dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/opentsne-1.0.2' # remove the cython generated file to force rebuild rm -f openTSNE/_tsne.cpp openTSNE/kl_divergence.cpp openTSNE/quad_tree.cpp openTSNE/_matrix_mul/matrix_mul_fftw3.cpp openTSNE/_matrix_mul/matrix_mul_numpy.cpp make[1]: Leaving directory '/build/reproducible-path/opentsne-1.0.2' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne * Building wheel... FFTW3 header files found. Using FFTW implementation of FFT. running bdist_wheel running build running build_py creating build/lib.linux-i686-cpython-312 creating build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/callbacks.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/initialization.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/tsne.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/nearest_neighbors.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/utils.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/metrics.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/affinity.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/version.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/sklearn.py -> build/lib.linux-i686-cpython-312/openTSNE copying openTSNE/__init__.py -> build/lib.linux-i686-cpython-312/openTSNE creating build/lib.linux-i686-cpython-312/openTSNE/dependencies copying openTSNE/dependencies/__init__.py -> build/lib.linux-i686-cpython-312/openTSNE/dependencies creating build/lib.linux-i686-cpython-312/openTSNE/_matrix_mul copying openTSNE/_matrix_mul/__init__.py -> build/lib.linux-i686-cpython-312/openTSNE/_matrix_mul creating build/lib.linux-i686-cpython-312/openTSNE/dependencies/annoy copying openTSNE/dependencies/annoy/__init__.py -> build/lib.linux-i686-cpython-312/openTSNE/dependencies/annoy running build_ext creating build/reproducible-path/opentsne-1.0.2/tmpsgjl7krq i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /build/reproducible-path/opentsne-1.0.2/tmpsgjl7krq/omp.c -o build/reproducible-path/opentsne-1.0.2/tmpsgjl7krq/omp.o i686-linux-gnu-gcc build/reproducible-path/opentsne-1.0.2/tmpsgjl7krq/omp.o -o /build/reproducible-path/opentsne-1.0.2/tmpsgjl7krq/omp.c performance hint: openTSNE/quad_tree.pyx:73:5: Exception check on 'update_center_of_mass' will always require the GIL to be acquired. Possible solutions: 1. Declare 'update_center_of_mass' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'update_center_of_mass' to allow an error code to be returned. performance hint: openTSNE/quad_tree.pxd:21:18: No exception value declared for 'is_close' in pxd file. Users cimporting this function and calling it without the gil will always require an exception check. Suggest adding an explicit exception value. warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' Found openmp. Compiling with openmp flags... Compiling openTSNE/quad_tree.pyx because it changed. [1/1] Cythonizing openTSNE/quad_tree.pyx building 'openTSNE.quad_tree' extension creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/openTSNE i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/quad_tree.cpp -o build/temp.linux-i686-cpython-312/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/quad_tree.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/openTSNE/quad_tree.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/openTSNE/quad_tree.cpython-312-i386-linux-gnu.so -fopenmp warning: openTSNE/_tsne.pyx:9:7: implicit declaration of 'np' performance hint: openTSNE/_tsne.pyx:225:5: Exception check on '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dest_sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dtype' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg_base' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_series' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'last_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dst_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sn' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'type_match' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'candidates' warning: openTSNE/_tsne.pyx:540:8: implicit declaration of 'coord_max' warning: openTSNE/_tsne.pyx:542:8: implicit declaration of 'coord_min' performance hint: openTSNE/_tsne.pyx:207:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. performance hint: openTSNE/_tsne.pyx:234:56: Exception check after calling 'is_close' will always require the GIL to be acquired. Possible solutions: 1. Declare 'is_close' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Declare any exception value explicitly for functions in pxd files. performance hint: openTSNE/_tsne.pyx:275:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. Compiling openTSNE/_tsne.pyx because it changed. [1/1] Cythonizing openTSNE/_tsne.pyx building 'openTSNE._tsne' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_tsne.cpp -o build/temp.linux-i686-cpython-312/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_tsne.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/openTSNE/_tsne.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/openTSNE/_tsne.cpython-312-i386-linux-gnu.so -fopenmp warning: openTSNE/kl_divergence.pyx:9:7: implicit declaration of 'np' warning: openTSNE/kl_divergence.pyx:17:19: implicit declaration of 'estimate_positive_gradient_nn' Compiling openTSNE/kl_divergence.pyx because it changed. [1/1] Cythonizing openTSNE/kl_divergence.pyx building 'openTSNE.kl_divergence' extension i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/kl_divergence.cpp -o build/temp.linux-i686-cpython-312/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/kl_divergence.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/openTSNE/kl_divergence.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/openTSNE/kl_divergence.cpython-312-i386-linux-gnu.so -fopenmp building 'openTSNE.dependencies.annoy.annoylib' extension creating build/temp.linux-i686-cpython-312/openTSNE/dependencies creating build/temp.linux-i686-cpython-312/openTSNE/dependencies/annoy i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.linux-i686-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp openTSNE/dependencies/annoy/annoymodule.cc: In function 'bool convert_list_to_vector(PyObject*, int, std::vector >*)': openTSNE/dependencies/annoy/annoymodule.cc:304:69: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Py_ssize_t' {aka 'int'} [-Wformat=] 304 | snprintf(buf, 128, "Vector has wrong length (expected %d, got %ld)", f, PyObject_Size(v)); | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int Py_ssize_t {aka int} | %d In file included from openTSNE/dependencies/annoy/annoymodule.cc:15: openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoymodule.cc:96:84: required from here 96 | bool load(const char* filename, bool prefault, char** error) { return _index.load(filename, prefault, error); }; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = long long unsigned int; D = Hamming; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoymodule.cc:92:71: required from here 92 | bool build(int q, int n_threads, char** error) { return _index.build(q, n_threads, error); }; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = DotProduct; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Manhattan; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Euclidean; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Angular; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -o build/lib.linux-i686-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-i386-linux-gnu.so -fopenmp warning: openTSNE/_matrix_mul/matrix_mul_fftw3.pyx:9:7: implicit declaration of 'np' Compiling openTSNE/_matrix_mul/matrix_mul_fftw3.pyx because it changed. [1/1] Cythonizing openTSNE/_matrix_mul/matrix_mul_fftw3.pyx building 'openTSNE._matrix_mul.matrix_mul' extension creating build/temp.linux-i686-cpython-312/openTSNE/_matrix_mul i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.linux-i686-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_matrix_mul/matrix_mul_fftw3.cpp:1282: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/i386-linux-gnu -lfftw3 -o build/lib.linux-i686-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-i386-linux-gnu.so -fopenmp installing to build/bdist.linux-i686/wheel running install running install_lib creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/callbacks.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/initialization.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/tsne.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/nearest_neighbors.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/kl_divergence.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/quad_tree.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/utils.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/_tsne.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/metrics.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/affinity.py -> build/bdist.linux-i686/wheel/./openTSNE creating build/bdist.linux-i686/wheel/openTSNE/dependencies creating build/bdist.linux-i686/wheel/openTSNE/dependencies/annoy copying build/lib.linux-i686-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-i686-cpython-312/openTSNE/dependencies/annoy/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-i686-cpython-312/openTSNE/dependencies/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE/dependencies copying build/lib.linux-i686-cpython-312/openTSNE/version.py -> build/bdist.linux-i686/wheel/./openTSNE creating build/bdist.linux-i686/wheel/openTSNE/_matrix_mul copying build/lib.linux-i686-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./openTSNE/_matrix_mul copying build/lib.linux-i686-cpython-312/openTSNE/_matrix_mul/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE/_matrix_mul copying build/lib.linux-i686-cpython-312/openTSNE/sklearn.py -> build/bdist.linux-i686/wheel/./openTSNE copying build/lib.linux-i686-cpython-312/openTSNE/__init__.py -> build/bdist.linux-i686/wheel/./openTSNE running install_egg_info running egg_info creating openTSNE.egg-info writing openTSNE.egg-info/PKG-INFO writing dependency_links to openTSNE.egg-info/dependency_links.txt writing requirements to openTSNE.egg-info/requires.txt writing top-level names to openTSNE.egg-info/top_level.txt writing manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'openTSNE' adding license file 'LICENSE' writing manifest file 'openTSNE.egg-info/SOURCES.txt' Copying openTSNE.egg-info to build/bdist.linux-i686/wheel/./openTSNE-1.0.2.egg-info running install_scripts creating build/bdist.linux-i686/wheel/openTSNE-1.0.2.dist-info/WHEEL creating '/build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/.tmp-rl1pprnd/openTSNE-1.0.2-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'openTSNE/__init__.py' adding 'openTSNE/_tsne.cpython-312-i386-linux-gnu.so' adding 'openTSNE/affinity.py' adding 'openTSNE/callbacks.py' adding 'openTSNE/initialization.py' adding 'openTSNE/kl_divergence.cpython-312-i386-linux-gnu.so' adding 'openTSNE/metrics.py' adding 'openTSNE/nearest_neighbors.py' adding 'openTSNE/quad_tree.cpython-312-i386-linux-gnu.so' adding 'openTSNE/sklearn.py' adding 'openTSNE/tsne.py' adding 'openTSNE/utils.py' adding 'openTSNE/version.py' adding 'openTSNE/_matrix_mul/__init__.py' adding 'openTSNE/_matrix_mul/matrix_mul.cpython-312-i386-linux-gnu.so' adding 'openTSNE/dependencies/__init__.py' adding 'openTSNE/dependencies/annoy/__init__.py' adding 'openTSNE/dependencies/annoy/annoylib.cpython-312-i386-linux-gnu.so' adding 'openTSNE-1.0.2.dist-info/LICENSE' adding 'openTSNE-1.0.2.dist-info/METADATA' adding 'openTSNE-1.0.2.dist-info/WHEEL' adding 'openTSNE-1.0.2.dist-info/top_level.txt' adding 'openTSNE-1.0.2.dist-info/RECORD' removing build/bdist.linux-i686/wheel Successfully built openTSNE-1.0.2-cp312-cp312-linux_i686.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build configfile: pyproject.toml plugins: typeguard-4.3.0 collected 163 items tests/test_affinities.py ......................... [ 15%] tests/test_correctness.py ......................F... [ 31%] tests/test_different_usages.py ............ [ 38%] tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%] ss [ 64%] tests/test_sklearn_wrapper.py ... [ 66%] tests/test_tsne.py ...ss............................................... [ 98%] tests/test_utils.py ... [100%] =================================== FAILURES =================================== _________ TestTSNECorrectnessUsingPrecomputedDistanceMatrix.test_iris __________ self = @unittest.skipIf(platform.machine() == 'i686' or platform.machine() == 'i386', reason="Skipping test on i386 architecture") def test_iris(self): x = datasets.load_iris().data print(platform.machine()) x += np.random.normal(0, 1e-3, x.shape) # iris contains duplicate rows distances = squareform(pdist(x)) params = dict(initialization="random", random_state=0) embedding1 = TSNE(metric="precomputed", **params).fit(distances) embedding2 = TSNE(metric="euclidean", **params).fit(x) > np.testing.assert_almost_equal(embedding1, embedding2) tests/test_correctness.py:304: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /usr/lib/python3.12/contextlib.py:81: in inner return func(*args, **kwds) /usr/lib/python3.12/contextlib.py:81: in inner return func(*args, **kwds) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ args = (.compare at 0xf05f5668>, TSNEEmbedding([[ 12.33582641, 14.73842604], ....87994945e+00], [-1.01942410e+01, -8.53228390e+00], [-6.93581780e+00, -5.99518017e+00]])) kwds = {'err_msg': '', 'header': 'Arrays are not almost equal to 7 decimals', 'precision': 7, 'verbose': True} @wraps(func) def inner(*args, **kwds): with self._recreate_cm(): > return func(*args, **kwds) E AssertionError: E Arrays are not almost equal to 7 decimals E E Mismatched elements: 300 / 300 (100%) E Max absolute difference: 4.98083128 E Max relative difference: 343.37801699 E x: TSNEEmbedding([[ 12.3358264, 14.738426 ], E [ 12.1169335, 11.9589143], E [ 13.1900966, 12.4067624],... E y: TSNEEmbedding([[ 1.1261305e+01, 1.4358504e+01], E [ 1.2425017e+01, 1.1965525e+01], E [ 1.3297560e+01, 1.2726416e+01],... /usr/lib/python3.12/contextlib.py:81: AssertionError ----------------------------- Captured stdout call ----------------------------- x86_64 =============================== warnings summary =============================== tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error /usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly. warnings.warn( tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED tests/test_correctness.py::TestTSNECorrectnessUsingPrecomputedDistanceMatrix::test_iris ======= 1 failed, 136 passed, 26 skipped, 7 warnings in 88.81s (0:01:28) ======= E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build; python3.12 -m pytest tests dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12 returned exit code 13 make: *** [debian/rules:20: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/59711 and its subdirectories Fri Sep 27 23:23:45 UTC 2024 W: No second build log, what happened?