Sat Oct 5 02:22:38 UTC 2024 I: starting to build damapper/unstable/i386 on jenkins on '2024-10-05 02:22' Sat Oct 5 02:22:38 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/33721/console.log Sat Oct 5 02:22:38 UTC 2024 I: Downloading source for unstable/damapper=0.0+git20240314.b025cf9-1 --2024-10-05 02:22:38-- http://deb.debian.org/debian/pool/main/d/damapper/damapper_0.0%2bgit20240314.b025cf9-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2307 (2.3K) [text/prs.lines.tag] Saving to: ‘damapper_0.0+git20240314.b025cf9-1.dsc’ 0K .. 100% 309M=0s 2024-10-05 02:22:38 (309 MB/s) - ‘damapper_0.0+git20240314.b025cf9-1.dsc’ saved [2307/2307] Sat Oct 5 02:22:38 UTC 2024 I: damapper_0.0+git20240314.b025cf9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: damapper Binary: damapper Architecture: any Version: 0.0+git20240314.b025cf9-1 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust , Étienne Mollier Homepage: https://github.com/thegenemyers/DAMAPPER Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/damapper Vcs-Git: https://salsa.debian.org/med-team/damapper.git Testsuite: autopkgtest Testsuite-Triggers: daligner, dazzdb Build-Depends: debhelper-compat (= 13) Package-List: damapper deb science optional arch=any Checksums-Sha1: ffc4301f461c14142e59797971456ea0d3dd8f61 79700 damapper_0.0+git20240314.b025cf9.orig.tar.xz e8cf5681f31e9c1ff6ffaca2b9da3408cb128f14 10944 damapper_0.0+git20240314.b025cf9-1.debian.tar.xz Checksums-Sha256: f01bd3d12be63b1e68cb1eb742d62231c1eedc1d8941f9dcc5d0039018925671 79700 damapper_0.0+git20240314.b025cf9.orig.tar.xz 47b9c153a03434307096dc04051e8beaab238475760d00a1637c6779368257ca 10944 damapper_0.0+git20240314.b025cf9-1.debian.tar.xz Files: b92e7346096e10ce4535a01f2bc643b7 79700 damapper_0.0+git20240314.b025cf9.orig.tar.xz f75a868ac777a448f9fc49cbf33656b2 10944 damapper_0.0+git20240314.b025cf9-1.debian.tar.xz Dgit: ceed4a83f387f65c9e125d232ee29febc8b7c649 debian archive/debian/0.0+git20240314.b025cf9-1 https://git.dgit.debian.org/damapper -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbLXksUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqlDw//cN+NlpdKrGTgJngyPH07gJ+B6qTH 8WAm8leQGSKif4QVIyLan5qUi7pErX3riR/O9exIifOBiopuniglP8BqiVzELNNF o31wzOvmaNFtCm5oLkYzIj12fKFYkQvOAmexenQHkxxZYs8L0OYhlbWq2GM9b0FU 6NCTONWA5oJX8ShAbMecvmHJrpYihGLjFSmtzFktasxuw5fe66B0YGj2tqAjqv8O buvczSNBAh4Kqot9lvxsIEubrNWf/M4+894fzQZ8PmZVqb/a6wVYzp/DTG9Cn631 Fxypv7uct+a1rQPprHv5k2m/4skfVG3npO2td2K+ccyppYnXOBBTCnkb9OatbxkG BAvXPTjzxkB7VK0iDJ+PmeOPYPgkMkEEw8UAfmo7sIhe/SfX95wbwkG6GOt5hWof iCPw5qULHfkJ5MmfSmWvwsTnq7g6D+ash0Ua8hzxuGjjLG0WW70sPJiAeOPicGCj 8/RTEjqPPDMA+PcggqCQH5MntF6E3jPHR8q8b7wiVmBt/YsShQ3gdn2oudHT0/1W +Lj9F0+XPmmzWoUWUYxKXolhv1jJ/6+BVnICwjQce3Q0bpKb3dp5mhjAOwdMvviM eGR9Pk/iEk5xkHmehfeqfeBAc5HsUGVUL5MZCq/6bAoskvsKGyatMTiY1eHum+gk M5mr/hw7wCB9kRU= =m/sx -----END PGP SIGNATURE----- Sat Oct 5 02:22:38 UTC 2024 I: Checking whether the package is not for us Sat Oct 5 02:22:38 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Sat Oct 5 02:22:38 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Sat Oct 5 02:23:28 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 4 14:22:40 -12 2024 I: pbuilder-time-stamp: 1728094960 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [damapper_0.0+git20240314.b025cf9-1.dsc] I: copying [./damapper_0.0+git20240314.b025cf9.orig.tar.xz] I: copying [./damapper_0.0+git20240314.b025cf9-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 25 16:39:39 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./damapper_0.0+git20240314.b025cf9-1.dsc: no acceptable signature found dpkg-source: info: extracting damapper in damapper-0.0+git20240314.b025cf9 dpkg-source: info: unpacking damapper_0.0+git20240314.b025cf9.orig.tar.xz dpkg-source: info: unpacking damapper_0.0+git20240314.b025cf9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying modify_makefile.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying typo.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/43739/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='76cdc17339f94856be30d915224062dd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='43739' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RN8f3bFu/pbuilderrc_YrLN --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RN8f3bFu/b1 --logfile b1/build.log damapper_0.0+git20240314.b025cf9-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos12-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/43739/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19772 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 20.1 MB of archives. After unpacking 75.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Fetched 20.1 MB in 1s (30.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19772 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../08-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../21-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../23-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libicu72:i386 (72.1-5) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:i386 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:i386 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/damapper-0.0+git20240314.b025cf9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../damapper_0.0+git20240314.b025cf9-1_source.changes dpkg-buildpackage: info: source package damapper dpkg-buildpackage: info: source version 0.0+git20240314.b025cf9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j11 clean make[1]: Entering directory '/build/reproducible-path/damapper-0.0+git20240314.b025cf9' rm -f damapper HPC.damapper rm -fr *.dSYM rm -f damapper.tar.gz make[1]: Leaving directory '/build/reproducible-path/damapper-0.0+git20240314.b025cf9' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j11 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/damapper-0.0+git20240314.b025cf9' cc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -z now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/damapper-0.0+git20240314.b025cf9=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o damapper damapper.c map.c align.c DB.c QV.c -lpthread -lm cc -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -D_FORTIFY_SOURCE=2 -z now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/damapper-0.0+git20240314.b025cf9=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o HPC.damapper HPC.damapper.c DB.c QV.c -lm map.c: In function ‘print_tree’: map.c:1233:20: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 4 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, | ~~~~~ | | | int map.c:1233:26: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 5 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c:1233:58: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 11 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, 1235 | (h->rgt==NULL)?-1:h->rgt-ref,(h->from==NULL)?-1:h->from-ref, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c:1233:66: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 12 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d 1234 | lev,"",h-ref,(h->lft==NULL)?-1:h->lft-ref,h->diag,h->apos,h->bpos,h->bmin,h->bmax, 1235 | (h->rgt==NULL)?-1:h->rgt-ref,(h->from==NULL)?-1:h->from-ref, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c:1233:72: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 13 has type ‘int’ [-Wformat=] 1233 | printf(" %*s %4ld: %4ld < %8d(%5d,%8d) [%8d,%8d] > %4ld (->%4ld @%4ld)\n", | ~~~^ | | | long int | %4d ...... 1236 | (h->orig==NULL)?-1:h->orig-ref); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | int map.c: In function ‘Entwine’: map.c:1962:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1962 | uint16 *ktrace = tbuf->trace + (uint64) (kpath->trace); | ^ map.c:1963:34: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 1963 | uint16 *jtrace = tbuf->trace + (uint64) (jpath->trace); | ^ map.c: In function ‘Fusion’: map.c:2088:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2088 | { uint16 *t = tbuf->trace + (uint64) (path1->trace); | ^ map.c:2096:33: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2096 | { uint16 *t = tbuf->trace + (uint64) (path2->trace); | ^ map.c: In function ‘report_thread’: map.c:2552:53: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2552 | amatch[novl].path.trace = (void *) (tbuf->top); | ^ map.c:2569:57: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 2569 | bmatch[novl].path.trace = (void *) (tbuf->top); | ^ map.c:2744:58: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2744 | { amatch[p].path.trace = tbuf->trace + (uint64) (amatch[p].path.trace); | ^ map.c:2764:62: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2764 | { bmatch[p].path.trace = tbuf->trace + (uint64) (bmatch[p].path.trace); | ^ map.c:2800:58: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 2800 | { bmatch[p].path.trace = tbuf->trace + (uint64) (bmatch[p].path.trace); | ^ QV.c: In function ‘Build_Table’: QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function ‘Huffman’: QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ QV.c: In function ‘Build_Table’: QV.c:127:23: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] 127 | { uint64 symbol = (uint64) (node->lft); | ^ QV.c: In function ‘Huffman’: QV.c:174:33: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] 174 | node[value].lft = (HTree *) (uint64) i; | ^ make[1]: Leaving directory '/build/reproducible-path/damapper-0.0+git20240314.b025cf9' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/damapper/ make -j11 install DESTDIR=/build/reproducible-path/damapper-0.0\+git20240314.b025cf9/debian/damapper AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/damapper-0.0+git20240314.b025cf9' mkdir bin/ cp -f damapper HPC.damapper bin/ make[1]: Leaving directory '/build/reproducible-path/damapper-0.0+git20240314.b025cf9' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'damapper' in '../damapper_0.0+git20240314.b025cf9-1_i386.deb'. dpkg-deb: building package 'damapper-dbgsym' in '../damapper-dbgsym_0.0+git20240314.b025cf9-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../damapper_0.0+git20240314.b025cf9-1_i386.buildinfo dpkg-genchanges --build=binary -O../damapper_0.0+git20240314.b025cf9-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/43739 and its subdirectories I: Current time: Fri Oct 4 14:23:27 -12 2024 I: pbuilder-time-stamp: 1728095007 Sat Oct 5 02:23:29 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Sat Oct 5 02:23:29 UTC 2024 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Sat Oct 5 02:23:59 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. Sat Oct 5 02:24:00 UTC 2024 I: damapper_0.0+git20240314.b025cf9-1_i386.changes: Format: 1.8 Date: Sun, 25 Aug 2024 18:29:43 +0200 Source: damapper Binary: damapper damapper-dbgsym Architecture: i386 Version: 0.0+git20240314.b025cf9-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: damapper - long read to reference genome mapping tool Changes: damapper (0.0+git20240314.b025cf9-1) unstable; urgency=medium . * New upstream version 0.0+git20240314.b025cf9 * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. * typo.patch: new: fix a typo caught by lintian. Checksums-Sha1: 12e9e3f45eeea3a7a784b0e43e05c69e5c9fc676 325296 damapper-dbgsym_0.0+git20240314.b025cf9-1_i386.deb 9ab9ec77b826ae9af76826b7cb4e0007880413f3 4981 damapper_0.0+git20240314.b025cf9-1_i386.buildinfo c26a50da8db49af2ed4ab1eb990f4bc4498ad894 112244 damapper_0.0+git20240314.b025cf9-1_i386.deb Checksums-Sha256: cd81e26465082d78b43fc9ece02fd8508356c978fccf10614934fe7e0c3e5d67 325296 damapper-dbgsym_0.0+git20240314.b025cf9-1_i386.deb 0d9164812190866075545a9afc50b9cd278ea03b5fa8edcc3c00745bfc0433d6 4981 damapper_0.0+git20240314.b025cf9-1_i386.buildinfo 703d9a10069172eb0608fc336ff2f15801ad9ec7bc3ef4a0f19f947b9470d7cd 112244 damapper_0.0+git20240314.b025cf9-1_i386.deb Files: e0a8a9f748982a99a5a115c73fb4607e 325296 debug optional damapper-dbgsym_0.0+git20240314.b025cf9-1_i386.deb 57a9290037290aa11aae264e52500306 4981 science optional damapper_0.0+git20240314.b025cf9-1_i386.buildinfo cd69c1d05196a1eaa96d75ff7d8eaae7 112244 science optional damapper_0.0+git20240314.b025cf9-1_i386.deb Sat Oct 5 02:24:01 UTC 2024 I: diffoscope 278 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_5-33721.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RN8f3bFu/damapper_0.0+git20240314.b025cf9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RN8f3bFu/damapper_0.0+git20240314.b025cf9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RN8f3bFu/damapper_0.0+git20240314.b025cf9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RN8f3bFu/b1/damapper_0.0+git20240314.b025cf9-1_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.RN8f3bFu/b2/damapper_0.0+git20240314.b025cf9-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.382s) 0.382s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 736ms CPU time consumed: 736ms Sat Oct 5 02:24:02 UTC 2024 I: diffoscope 278 found no differences in the changes files, and a .buildinfo file also exists. Sat Oct 5 02:24:02 UTC 2024 I: damapper from unstable built successfully and reproducibly on i386. Sat Oct 5 02:24:03 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Oct 5 02:24:03 UTC 2024 I: Submitting 8.0K b1/damapper_0.0+git20240314.b025cf9-1_i386.buildinfo.asc Sat Oct 5 02:24:04 UTC 2024 I: Submitting 8.0K b2/damapper_0.0+git20240314.b025cf9-1_i386.buildinfo.asc Sat Oct 5 02:24:05 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Oct 5 02:24:05 UTC 2024 I: Done submitting .buildinfo files. Sat Oct 5 02:24:05 UTC 2024 I: Removing signed damapper_0.0+git20240314.b025cf9-1_i386.buildinfo.asc files: removed './b1/damapper_0.0+git20240314.b025cf9-1_i386.buildinfo.asc' removed './b2/damapper_0.0+git20240314.b025cf9-1_i386.buildinfo.asc'