Fri Oct 25 01:27:05 UTC 2024 I: starting to build ctffind/unstable/i386 on jenkins on '2024-10-25 01:26' Fri Oct 25 01:27:05 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/40087/console.log Fri Oct 25 01:27:05 UTC 2024 I: Downloading source for unstable/ctffind=4.1.14-3 --2024-10-25 01:27:05-- http://deb.debian.org/debian/pool/main/c/ctffind/ctffind_4.1.14-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1969 (1.9K) [text/prs.lines.tag] Saving to: ‘ctffind_4.1.14-3.dsc’ 0K . 100% 244M=0s 2024-10-25 01:27:05 (244 MB/s) - ‘ctffind_4.1.14-3.dsc’ saved [1969/1969] Fri Oct 25 01:27:05 UTC 2024 I: ctffind_4.1.14-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ctffind Binary: ctffind Architecture: any Version: 4.1.14-3 Maintainer: Debian Med Packaging Team Uploaders: Alex Myczko Homepage: https://grigoriefflab.umassmed.edu/ctffind4 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ctffind Vcs-Git: https://salsa.debian.org/med-team/ctffind.git Build-Depends: debhelper-compat (= 13), libwxgtk3.2-dev, libfftw3-dev, libjpeg-dev, libtiff-dev Package-List: ctffind deb science optional arch=any Checksums-Sha1: 8d8a6db442d07cf255de16698f2fa3df8b0f39d0 666612 ctffind_4.1.14.orig.tar.gz ad88ae221e67ebafc0a7f2fbc207cb9720618e68 4048 ctffind_4.1.14-3.debian.tar.xz Checksums-Sha256: 5f3eee53267fd1897cc1748d2154f7352452e881bcffd07d049d39a3c3b373b5 666612 ctffind_4.1.14.orig.tar.gz 0352833ad3166e5f6af4ba6f289890be27012e3af0dfcd8717b4b1e0f0a3bb68 4048 ctffind_4.1.14-3.debian.tar.xz Files: 40b61d1a59159b9be1ff8f001bb1b79a 666612 ctffind_4.1.14.orig.tar.gz cb25e5e8eac6b57808dbf20019bff7fd 4048 ctffind_4.1.14-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEtgob82PcExn/Co6JEWhSvN91FcAFAmaYoswACgkQEWhSvN91 FcBFBxAAgEVBb6D/kQ9QKwC3j7v9bqDnHichlcEh5O3MIDb81NSGWvsfC9qq7n5i Os503jzYlgd7pELDlIqp9JqllvCKSBv32OuCjExX3/URK1DF69yyEc3gh1srjdbl GqVv0vkFcMqcykq9Tw+viySxg+7B8EuY3MKJsh3mYVJIQ8J1X9P4dogM6ObuHM7K bmIDpKqCYgKGkVBRnJ6TF1NDqgUF/Y2vpwAvi9BWt9kYst+QF3/zJqGRzTyf/5aT CfHtcRt73dmAqn94P0/q6H5ZKRXyw1NKegPoRrFHUwfOGAbMRWmMXdQN3DXM2KXr RTV79Em4XlJZvD2cwfaiG3030rL71no3Ub3XTOcOeDhQJ/WElDYSSIc2YsvE1fwF PlRD645a72qS2uDr2D2ETlsuFyN1DQcNQTANW2d0ERCv7oQUYN0q4qJhCAQ67Z0z Rwhw2hHUGdDluvXrrgDo3LvbZt/Ifn2QC7okb7bSVKuQcfwn+UAxk32dBEf2Mtvi npxXHbFiMvXgSVlwZPg37351gVS8S+dGUztQFZjRkCTtx7hFmxZubpbQVhizCoIB vV+tdU5Hqh351IMrTPZaMOBpd5Q7sNYsS5hEcqutYvNp0KwdWKyMx/+4b3grupd7 UIb3+KiNUYxEwL2/3eHS+DB6mCx/5Ua3fM6SDzlO6Ot3Ei3iCNk= =h0wx -----END PGP SIGNATURE----- Fri Oct 25 01:27:05 UTC 2024 I: Checking whether the package is not for us Fri Oct 25 01:27:05 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Fri Oct 25 01:27:05 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Fri Oct 25 01:29:03 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 24 13:27:07 -12 2024 I: pbuilder-time-stamp: 1729819627 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [ctffind_4.1.14-3.dsc] I: copying [./ctffind_4.1.14.orig.tar.gz] I: copying [./ctffind_4.1.14-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Jul 18 05:06:20 2024 gpgv: using RSA key B60A1BF363DC1319FF0A8E89116852BCDF7515C0 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ctffind_4.1.14-3.dsc: no acceptable signature found dpkg-source: info: extracting ctffind in ctffind-4.1.14 dpkg-source: info: unpacking ctffind_4.1.14.orig.tar.gz dpkg-source: info: unpacking ctffind_4.1.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying src-core-matrix I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10363/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='99b4c000da53418b8fc33fa4c7b60149' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10363' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rdNvoHwe/pbuilderrc_JI2P --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rdNvoHwe/b1 --logfile b1/build.log ctffind_4.1.14-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos2-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/10363/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libwxgtk3.2-dev, libfftw3-dev, libjpeg-dev, libtiff-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19933 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libwxgtk3.2-dev; however: Package libwxgtk3.2-dev is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on libjpeg-dev; however: Package libjpeg-dev is not installed. pbuilder-satisfydepends-dummy depends on libtiff-dev; however: Package libtiff-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} dbus{a} dbus-bin{a} dbus-daemon{a} dbus-session-bus-common{a} dbus-system-bus-common{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} libapparmor1{a} libarchive-zip-perl{a} libatk-bridge2.0-0t64{a} libatk1.0-0t64{a} libatspi2.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libcairo-gobject2{a} libcairo2{a} libcloudproviders0{a} libcolord2{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1t64{a} libepoxy0{a} libexpat1{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-quad3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk-3-0t64{a} libgtk-3-common{a} libharfbuzz0b{a} libice6{a} libicu72{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc-dev{a} liblerc4{a} libllvm19{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnotify4{a} libopengl-dev{a} libopengl0{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpciaccess0{a} libpcre2-32-0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsystemd-shared{a} libthai-data{a} libthai0{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtool{a} libuchardet0{a} libvulkan1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libwxbase3.2-1t64{a} libwxgtk-gl3.2-1t64{a} libwxgtk3.2-1t64{a} libwxgtk3.2-dev{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcb1-dev{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} mesa-libgallium{a} po-debconf{a} procps{a} sensible-utils{a} shared-mime-info{a} systemd{a} systemd-sysv{a} wx-common{a} wx3.2-headers{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core ca-certificates chrony curl krb5-locales libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data libgtk-3-bin libkmod2 libldap-common libltdl-dev libmail-sendmail-perl libnss-systemd librsvg2-common libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers ntpsec openntpd psmisc publicsuffix systemd-cryptsetup systemd-timesyncd wget xdg-user-dirs zip 0 packages upgraded, 207 newly installed, 0 to remove and 0 not upgraded. Need to get 123 MB of archives. After unpacking 512 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 libapparmor1 i386 3.1.7-1+b1 [43.0 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libsystemd-shared i386 256.7-2 [2130 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 systemd i386 256.7-2 [3499 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 systemd-sysv i386 256.7-2 [58.5 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 libdbus-1-3 i386 1.14.10-4+b1 [217 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 dbus-bin i386 1.14.10-4+b1 [107 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 dbus-session-bus-common all 1.14.10-4 [79.0 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 dbus-daemon i386 1.14.10-4+b1 [195 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 dbus-system-bus-common all 1.14.10-4 [80.1 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 dbus i386 1.14.10-4+b1 [101 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB] Get: 13 http://deb.debian.org/debian unstable/main i386 procps i386 2:4.0.4-6 [876 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 libpam-systemd i386 256.7-2 [290 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 23 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 libglib2.0-0t64 i386 2.82.2-1 [1572 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 shared-mime-info i386 2.4-5+b1 [761 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo i386 1:2.1.5-3 [169 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libpng16-16t64 i386 1.6.44-2 [288 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 libjbig0 i386 2.1-6.1+b1 [31.8 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 liblerc4 i386 4.0.0+ds-4+b1 [180 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 libsharpyuv0 i386 1.4.0-0.1 [113 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 libwebp7 i386 1.4.0-0.1 [318 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 libgdk-pixbuf-2.0-0 i386 2.42.12+dfsg-1 [147 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 gtk-update-icon-cache i386 4.16.3+ds-2 [50.5 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 hicolor-icon-theme all 0.18-1 [12.0 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 adwaita-icon-theme all 47.0-2 [463 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 at-spi2-common all 2.54.0-1 [170 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 47 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 dbus-user-session i386 1.14.10-4+b1 [79.1 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libdconf1 i386 0.40.0-4+b2 [43.6 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 dconf-service i386 0.40.0-4+b2 [35.0 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 dconf-gsettings-backend i386 0.40.0-4+b2 [30.7 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 58 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 61 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 fontconfig-config i386 2.15.0-1.1 [317 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libfontconfig1 i386 2.15.0-1.1 [401 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 fontconfig i386 2.15.0-1.1 [462 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libatk1.0-0t64 i386 2.54.0-1 [51.0 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libxau6 i386 1:1.0.9-1+b1 [18.5 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.2-3+b1 [24.8 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libxcb1 i386 1.17.0-2 [148 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libx11-data all 2:1.8.7-1 [328 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libx11-6 i386 2:1.8.7-1+b1 [822 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b2 [52.6 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libxi6 i386 2:1.8.2-1 [81.2 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libatspi2.0-0t64 i386 2.54.0-1 [79.8 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libatk-bridge2.0-0t64 i386 2.54.0-1 [72.5 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 libavahi-common-data i386 0.8-13+b2 [112 kB] Get: 82 http://deb.debian.org/debian unstable/main i386 libavahi-common3 i386 0.8-13+b2 [45.3 kB] Get: 83 http://deb.debian.org/debian unstable/main i386 libavahi-client3 i386 0.8-13+b2 [49.3 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 libpixman-1-0 i386 0.42.2-1+b1 [555 kB] Get: 85 http://deb.debian.org/debian unstable/main i386 libxcb-render0 i386 1.17.0-2 [116 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2 [105 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 libxrender1 i386 1:0.9.10-1.1+b1 [28.8 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 libcairo-gobject2 i386 1.18.2-2 [129 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 libcloudproviders0 i386 0.3.6-1 [30.5 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 liblcms2-2 i386 2.16-2 [171 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 libcolord2 i386 1.4.7-1+b1 [145 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 97 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 libcups2t64 i386 2.4.10-2 [267 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.10.1-2 [391 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 libdatrie1 i386 0.2.13-3 [39.5 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 libdeflate-dev i386 1.22-1 [57.2 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 libdrm-common all 2.4.123-1 [8084 B] Get: 111 http://deb.debian.org/debian unstable/main i386 libdrm2 i386 2.4.123-1 [41.8 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 libdrm-amdgpu1 i386 2.4.123-1 [25.0 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 libpciaccess0 i386 0.17-3+b1 [53.8 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 libdrm-intel1 i386 2.4.123-1 [66.8 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 libdrm-radeon1 i386 2.4.123-1 [23.0 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 libedit2 i386 3.1-20240808-1 [98.0 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 libepoxy0 i386 1.5.10-2 [196 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 libfftw3-double3 i386 3.3.10-1+b3 [635 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 libfftw3-long3 i386 3.3.10-1+b3 [340 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 libfftw3-quad3 i386 3.3.10-1+b3 [1798 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 libfftw3-single3 i386 3.3.10-1+b3 [643 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 libfftw3-bin i386 3.3.10-1+b3 [49.8 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 libfftw3-dev i386 3.3.10-1+b3 [3199 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 libfribidi0 i386 1.0.15-1 [72.4 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 libwayland-server0 i386 1.23.0-1 [35.5 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 libxcb-randr0 i386 1.17.0-2 [118 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 libglapi-mesa i386 24.2.4-1 [37.8 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 libz3-4 i386 4.8.12-3.1+b2 [7989 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 libllvm19 i386 1:19.1.2-1 [30.4 MB] Get: 130 http://deb.debian.org/debian unstable/main i386 libsensors-config all 1:3.6.0-10 [14.6 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 libsensors5 i386 1:3.6.0-10 [35.5 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 libx11-xcb1 i386 2:1.8.7-1+b1 [232 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 libxcb-dri2-0 i386 1.17.0-2 [107 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 libxcb-dri3-0 i386 1.17.0-2 [107 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 libxcb-present0 i386 1.17.0-2 [105 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 libxcb-sync1 i386 1.17.0-2 [109 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 libxcb-xfixes0 i386 1.17.0-2 [109 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 libxshmfence1 i386 1.3-1+b1 [9028 B] Get: 139 http://deb.debian.org/debian unstable/main i386 mesa-libgallium i386 24.2.4-1 [9401 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 libgbm1 i386 24.2.4-1 [43.8 kB] Get: 141 http://deb.debian.org/debian unstable/main i386 libglvnd0 i386 1.7.0-1+b1 [44.4 kB] Get: 142 http://deb.debian.org/debian unstable/main i386 libxcb-glx0 i386 1.17.0-2 [123 kB] Get: 143 http://deb.debian.org/debian unstable/main i386 libxfixes3 i386 1:6.0.0-2+b1 [20.7 kB] Get: 144 http://deb.debian.org/debian unstable/main i386 libxxf86vm1 i386 1:1.1.4-1+b3 [20.1 kB] Get: 145 http://deb.debian.org/debian unstable/main i386 libvulkan1 i386 1.3.296.0-1 [136 kB] Get: 146 http://deb.debian.org/debian unstable/main i386 libgl1-mesa-dri i386 24.2.4-1 [42.4 kB] Get: 147 http://deb.debian.org/debian unstable/main i386 libglx-mesa0 i386 24.2.4-1 [160 kB] Get: 148 http://deb.debian.org/debian unstable/main i386 libglx0 i386 1.7.0-1+b1 [38.0 kB] Get: 149 http://deb.debian.org/debian unstable/main i386 libgl1 i386 1.7.0-1+b1 [82.7 kB] Get: 150 http://deb.debian.org/debian unstable/main i386 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 151 http://deb.debian.org/debian unstable/main i386 x11proto-dev all 2024.1-1 [603 kB] Get: 152 http://deb.debian.org/debian unstable/main i386 libxau-dev i386 1:1.0.9-1+b1 [21.6 kB] Get: 153 http://deb.debian.org/debian unstable/main i386 libxdmcp-dev i386 1:1.1.2-3+b1 [41.5 kB] Get: 154 http://deb.debian.org/debian unstable/main i386 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 155 http://deb.debian.org/debian unstable/main i386 libxcb1-dev i386 1.17.0-2 [186 kB] Get: 156 http://deb.debian.org/debian unstable/main i386 libx11-dev i386 2:1.8.7-1+b1 [904 kB] Get: 157 http://deb.debian.org/debian unstable/main i386 libglx-dev i386 1.7.0-1+b1 [15.8 kB] Get: 158 http://deb.debian.org/debian unstable/main i386 libgl-dev i386 1.7.0-1+b1 [101 kB] Get: 159 http://deb.debian.org/debian unstable/main i386 libopengl0 i386 1.7.0-1+b1 [29.5 kB] Get: 160 http://deb.debian.org/debian unstable/main i386 libglu1-mesa i386 9.0.2-1.1+b1 [187 kB] Get: 161 http://deb.debian.org/debian unstable/main i386 libopengl-dev i386 1.7.0-1+b1 [5368 B] Get: 162 http://deb.debian.org/debian unstable/main i386 libglu1-mesa-dev i386 9.0.2-1.1+b1 [230 kB] Get: 163 http://deb.debian.org/debian unstable/main i386 libgraphite2-3 i386 1.3.14-2 [77.7 kB] Get: 164 http://deb.debian.org/debian unstable/main i386 libharfbuzz0b i386 10.0.1-1 [503 kB] Get: 165 http://deb.debian.org/debian unstable/main i386 libthai-data all 0.1.29-2 [168 kB] Get: 166 http://deb.debian.org/debian unstable/main i386 libthai0 i386 0.1.29-2 [50.1 kB] Get: 167 http://deb.debian.org/debian unstable/main i386 libpango-1.0-0 i386 1.54.0+ds-3 [230 kB] Get: 168 http://deb.debian.org/debian unstable/main i386 libpangoft2-1.0-0 i386 1.54.0+ds-3 [58.1 kB] Get: 169 http://deb.debian.org/debian unstable/main i386 libpangocairo-1.0-0 i386 1.54.0+ds-3 [36.1 kB] Get: 170 http://deb.debian.org/debian unstable/main i386 libwayland-client0 i386 1.23.0-1 [26.9 kB] Get: 171 http://deb.debian.org/debian unstable/main i386 libwayland-cursor0 i386 1.23.0-1 [12.0 kB] Get: 172 http://deb.debian.org/debian unstable/main i386 libwayland-egl1 i386 1.23.0-1 [5468 B] Get: 173 http://deb.debian.org/debian unstable/main i386 libxcomposite1 i386 1:0.4.5-1+b1 [15.2 kB] Get: 174 http://deb.debian.org/debian unstable/main i386 libxcursor1 i386 1:1.2.2-1 [38.5 kB] Get: 175 http://deb.debian.org/debian unstable/main i386 libxdamage1 i386 1:1.1.6-1+b1 [15.6 kB] Get: 176 http://deb.debian.org/debian unstable/main i386 libxinerama1 i386 2:1.1.4-3+b1 [16.3 kB] Get: 177 http://deb.debian.org/debian unstable/main i386 xkb-data all 2.42-1 [790 kB] Get: 178 http://deb.debian.org/debian unstable/main i386 libxkbcommon0 i386 1.6.0-1+b1 [115 kB] Get: 179 http://deb.debian.org/debian unstable/main i386 libxrandr2 i386 2:1.5.4-1 [37.7 kB] Get: 180 http://deb.debian.org/debian unstable/main i386 libgtk-3-common all 3.24.43-4 [4657 kB] Get: 181 http://deb.debian.org/debian unstable/main i386 libgtk-3-0t64 i386 3.24.43-4 [2920 kB] Get: 182 http://deb.debian.org/debian unstable/main i386 x11-common all 1:7.7+23.1 [216 kB] Get: 183 http://deb.debian.org/debian unstable/main i386 libice6 i386 2:1.0.10-1+b1 [58.6 kB] Get: 184 http://deb.debian.org/debian unstable/main i386 libjbig-dev i386 2.1-6.1+b1 [31.0 kB] Get: 185 http://deb.debian.org/debian unstable/main i386 libjpeg62-turbo-dev i386 1:2.1.5-3 [303 kB] Get: 186 http://deb.debian.org/debian unstable/main i386 libjpeg-dev i386 1:2.1.5-3 [71.9 kB] Get: 187 http://deb.debian.org/debian unstable/main i386 liblerc-dev i386 4.0.0+ds-4+b1 [189 kB] Get: 188 http://deb.debian.org/debian unstable/main i386 liblzma-dev i386 5.6.2-2 [312 kB] Get: 189 http://deb.debian.org/debian unstable/main i386 libnotify4 i386 0.8.3-1+b1 [26.7 kB] Get: 190 http://deb.debian.org/debian unstable/main i386 libpcre2-32-0 i386 10.42-4+b1 [233 kB] Get: 191 http://deb.debian.org/debian unstable/main i386 libsharpyuv-dev i386 1.4.0-0.1 [117 kB] Get: 192 http://deb.debian.org/debian unstable/main i386 libsm6 i386 2:1.2.3-1+b1 [33.9 kB] Get: 193 http://deb.debian.org/debian unstable/main i386 libzstd-dev i386 1.5.6+dfsg-1 [352 kB] Get: 194 http://deb.debian.org/debian unstable/main i386 libwebpdemux2 i386 1.4.0-0.1 [111 kB] Get: 195 http://deb.debian.org/debian unstable/main i386 libwebpmux3 i386 1.4.0-0.1 [125 kB] Get: 196 http://deb.debian.org/debian unstable/main i386 libwebpdecoder3 i386 1.4.0-0.1 [209 kB] Get: 197 http://deb.debian.org/debian unstable/main i386 libwebp-dev i386 1.4.0-0.1 [459 kB] Get: 198 http://deb.debian.org/debian unstable/main i386 libtiffxx6 i386 4.5.1+git230720-5 [150 kB] Get: 199 http://deb.debian.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1 [915 kB] Get: 200 http://deb.debian.org/debian unstable/main i386 libtiff-dev i386 4.5.1+git230720-5 [487 kB] Get: 201 http://deb.debian.org/debian unstable/main i386 libwxbase3.2-1t64 i386 3.2.6+dfsg-2 [1099 kB] Get: 202 http://deb.debian.org/debian unstable/main i386 libxtst6 i386 2:1.2.3-1.1+b1 [26.5 kB] Get: 203 http://deb.debian.org/debian unstable/main i386 libwxgtk3.2-1t64 i386 3.2.6+dfsg-2 [4959 kB] Get: 204 http://deb.debian.org/debian unstable/main i386 libwxgtk-gl3.2-1t64 i386 3.2.6+dfsg-2 [85.8 kB] Get: 205 http://deb.debian.org/debian unstable/main i386 wx-common i386 3.2.6+dfsg-2 [122 kB] Get: 206 http://deb.debian.org/debian unstable/main i386 wx3.2-headers all 3.2.6+dfsg-2 [1127 kB] Get: 207 http://deb.debian.org/debian unstable/main i386 libwxgtk3.2-dev i386 3.2.6+dfsg-2 [80.3 kB] Fetched 123 MB in 2s (59.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19933 files and directories currently installed.) Preparing to unpack .../libapparmor1_3.1.7-1+b1_i386.deb ... Unpacking libapparmor1:i386 (3.1.7-1+b1) ... Selecting previously unselected package libsystemd-shared:i386. Preparing to unpack .../libsystemd-shared_256.7-2_i386.deb ... Unpacking libsystemd-shared:i386 (256.7-2) ... Selecting previously unselected package systemd. Preparing to unpack .../systemd_256.7-2_i386.deb ... Unpacking systemd (256.7-2) ... Setting up libapparmor1:i386 (3.1.7-1+b1) ... Setting up libsystemd-shared:i386 (256.7-2) ... Setting up systemd (256.7-2) ... Created symlink '/etc/systemd/system/getty.target.wants/getty@tty1.service' -> '/usr/lib/systemd/system/getty@.service'. Created symlink '/etc/systemd/system/multi-user.target.wants/remote-fs.target' -> '/usr/lib/systemd/system/remote-fs.target'. Created symlink '/etc/systemd/system/sysinit.target.wants/systemd-pstore.service' -> '/usr/lib/systemd/system/systemd-pstore.service'. Initializing machine ID from random generator. Creating group 'systemd-journal' with GID 999. Creating group 'systemd-network' with GID 998. Creating user 'systemd-network' (systemd Network Management) with UID 998 and GID 998. /usr/lib/tmpfiles.d/legacy.conf:13: Duplicate line for path "/run/lock", ignoring. Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20883 files and directories currently installed.) Preparing to unpack .../000-systemd-sysv_256.7-2_i386.deb ... Unpacking systemd-sysv (256.7-2) ... Selecting previously unselected package libdbus-1-3:i386. Preparing to unpack .../001-libdbus-1-3_1.14.10-4+b1_i386.deb ... Unpacking libdbus-1-3:i386 (1.14.10-4+b1) ... Selecting previously unselected package dbus-bin. Preparing to unpack .../002-dbus-bin_1.14.10-4+b1_i386.deb ... Unpacking dbus-bin (1.14.10-4+b1) ... Selecting previously unselected package dbus-session-bus-common. Preparing to unpack .../003-dbus-session-bus-common_1.14.10-4_all.deb ... Unpacking dbus-session-bus-common (1.14.10-4) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../004-libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package dbus-daemon. Preparing to unpack .../005-dbus-daemon_1.14.10-4+b1_i386.deb ... Unpacking dbus-daemon (1.14.10-4+b1) ... Selecting previously unselected package dbus-system-bus-common. Preparing to unpack .../006-dbus-system-bus-common_1.14.10-4_all.deb ... Unpacking dbus-system-bus-common (1.14.10-4) ... Selecting previously unselected package dbus. Preparing to unpack .../007-dbus_1.14.10-4+b1_i386.deb ... Unpacking dbus (1.14.10-4+b1) ... Selecting previously unselected package libproc2-0:i386. Preparing to unpack .../008-libproc2-0_2%3a4.0.4-6_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../009-procps_2%3a4.0.4-6_i386.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../010-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../012-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../015-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../016-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package libpam-systemd:i386. Preparing to unpack .../017-libpam-systemd_256.7-2_i386.deb ... Unpacking libpam-systemd:i386 (256.7-2) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../018-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../019-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../020-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... 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Setting up libdrm-common (2.4.123-1) ... Setting up libxcomposite1:i386 (1:0.4.5-1+b1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up dbus-bin (1.14.10-4+b1) ... Setting up libxkbcommon0:i386 (1.6.0-1+b1) ... Setting up libwayland-client0:i386 (1.23.0-1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libxcb-dri3-0:i386 (1.17.0-2) ... Setting up libllvm19:i386 (1:19.1.2-1) ... Setting up libx11-xcb1:i386 (2:1.8.7-1+b1) ... Setting up libice6:i386 (2:1.0.10-1+b1) ... Setting up gettext (0.22.5-2) ... Setting up libxdamage1:i386 (1:1.1.6-1+b1) ... Setting up libatk1.0-0t64:i386 (2.54.0-1) ... Setting up libxau-dev:i386 (1:1.0.9-1+b1) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... 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Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up shared-mime-info (2.4-5+b1) ... Setting up libxinerama1:i386 (2:1.1.4-3+b1) ... Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libxrandr2:i386 (2:1.5.4-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libdrm2:i386 (2.4.123-1) ... Setting up groff-base (1.23.0-5) ... Setting up libwayland-cursor0:i386 (1.23.0-1) ... Setting up libpam-systemd:i386 (256.7-2) ... Setting up libharfbuzz0b:i386 (10.0.1-1) ... Setting up libgdk-pixbuf-2.0-0:i386 (2.42.12+dfsg-1) ... Setting up libfontconfig1:i386 (2.15.0-1.1) ... Setting up libsm6:i386 (2:1.2.3-1+b1) ... Setting up libfftw3-dev:i386 (3.3.10-1+b3) ... Setting up libavahi-client3:i386 (0.8-13+b2) ... Setting up libdrm-amdgpu1:i386 (2.4.123-1) ... Setting up gtk-update-icon-cache (4.16.3+ds-2) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxcb1-dev:i386 (1.17.0-2) ... Setting up libxi6:i386 (2:1.8.2-1) ... Setting up libcurl4t64:i386 (8.10.1-2) ... Setting up libdrm-radeon1:i386 (2.4.123-1) ... Setting up libxtst6:i386 (2:1.2.3-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxcursor1:i386 (1:1.2.2-1) ... Setting up libpango-1.0-0:i386 (1.54.0+ds-3) ... Setting up libdrm-intel1:i386 (2.4.123-1) ... Setting up libx11-dev:i386 (2:1.8.7-1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink '/etc/systemd/system/timers.target.wants/man-db.timer' -> '/usr/lib/systemd/system/man-db.timer'. Setting up libcairo2:i386 (1.18.2-2) ... Setting up dbus-user-session (1.14.10-4+b1) ... Setting up adwaita-icon-theme (47.0-2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libnotify4:i386 (0.8.3-1+b1) ... Setting up libatspi2.0-0t64:i386 (2.54.0-1) ... 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Setting up libwxgtk3.2-1t64:i386 (3.2.6+dfsg-2) ... Setting up libwxgtk-gl3.2-1t64:i386 (3.2.6+dfsg-2) ... Setting up libwxgtk3.2-dev:i386 (3.2.6+dfsg-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/wx/config/gtk3-unicode-3.2 to provide /usr/bin/wx-config (wx-config) in auto mode Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ctffind-4.1.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ctffind_4.1.14-3_source.changes dpkg-buildpackage: info: source package ctffind dpkg-buildpackage: info: source version 4.1.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alex Myczko dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:15: warning: The macro 'AC_LIBTOOL_DLOPEN' is obsolete. configure.ac:15: You should run autoupdate. m4/ltoptions.m4:113: AC_LIBTOOL_DLOPEN is expanded from... configure.ac:15: the top level configure.ac:15: warning: AC_LIBTOOL_DLOPEN: Remove this warning and the call to _LT_SET_OPTION when you configure.ac:15: put the 'dlopen' option into LT_INIT's first parameter. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... m4/ltoptions.m4:113: AC_LIBTOOL_DLOPEN is expanded from... configure.ac:15: the top level configure.ac:16: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:16: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:16: the top level configure.ac:9: installing './compile' configure.ac:4: installing './missing' Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for icc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for icpc... no checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: static_link = false checking wxWidgets version... 3.2.6 checking for fftw3.h... yes checking for fftwf_malloc in -lmkl_intel_lp64... no checking for fftwf_malloc in -lfftw3f... yes configure: Using FFTW for Fourier transforms checking for TIFFOpen in -lwxtiff-3.0... no checking for library containing inflate... -lz checking for library containing jpeg_read_header... -ljpeg checking for library containing TIFFOpen... -ltiff checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j11 make[1]: Entering directory '/build/reproducible-path/ctffind-4.1.14' g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o ctffind-image_trim.o `test -f 'image_trim.cpp' || echo './'`image_trim.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/programs/ctffind/ctffind-ctffind.o `test -f 'src/programs/ctffind/ctffind.cpp' || echo './'`src/programs/ctffind/ctffind.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-functions.o `test -f 'src/core/functions.cpp' || echo './'`src/core/functions.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-globals.o `test -f 'src/core/globals.cpp' || echo './'`src/core/globals.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-randomnumbergenerator.o `test -f 'src/core/randomnumbergenerator.cpp' || echo './'`src/core/randomnumbergenerator.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-userinput.o `test -f 'src/core/userinput.cpp' || echo './'`src/core/userinput.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-curve.o `test -f 'src/core/curve.cpp' || echo './'`src/core/curve.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-matrix.o `test -f 'src/core/matrix.cpp' || echo './'`src/core/matrix.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-symmetry_matrix.o `test -f 'src/core/symmetry_matrix.cpp' || echo './'`src/core/symmetry_matrix.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-abstract_image_file.o `test -f 'src/core/abstract_image_file.cpp' || echo './'`src/core/abstract_image_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-mrc_header.o `test -f 'src/core/mrc_header.cpp' || echo './'`src/core/mrc_header.cpp src/core/curve.cpp:1067:1: warning: "/*" within comment [-Wcomment] 1067 | /**************************************************************** src/core/userinput.cpp:160:45: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 160 | wxPrintf(" Compiled : %s\n", __DATE__); | ^~~~~~~~ In file included from src/programs/ctffind/../../core/core_headers.h:80, from src/programs/ctffind/ctffind.cpp:1: src/programs/ctffind/../../core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/programs/ctffind/../../core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/../../core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/programs/ctffind/../../core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In member function 'virtual bool CtffindApp::DoCalculation()': src/programs/ctffind/ctffind.cpp:814:41: warning: unused variable 'boost_ring_contrast' [-Wunused-variable] 814 | const bool boost_ring_contrast = ! command_line_parser.FoundSwitch("fast"); | ^~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void OverlayCTF(Image*, CTF*, Image*, Image*, int, double*, double*, float*, float*, Curve*, Curve*)': src/programs/ctffind/ctffind.cpp:2316:15: warning: unused variable 'target_sigma' [-Wunused-variable] 2316 | float target_sigma; | ^~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2317:13: warning: unused variable 'chosen_bin' [-Wunused-variable] 2317 | int chosen_bin; | ^~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2447:15: warning: unused variable 'scale_factor' [-Wunused-variable] 2447 | float scale_factor; | ^~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'void ComputeEquiPhaseAverageOfPowerSpectrum(Image*, CTF*, Curve*, Curve*)': src/programs/ctffind/ctffind.cpp:2630:23: warning: unused variable 'lowest_sq_freq_of_ctf_aberration_max' [-Wunused-variable] 2630 | float lowest_sq_freq_of_ctf_aberration_max = std::min( fabs(ctf->ReturnSquaredSpatialFrequencyOfPhaseShiftExtremumGivenDefocus(ctf->GetDefocus1())), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool ComputeRotationalAverageOfPowerSpectrum(Image*, CTF*, Image*, Image*, int, double*, double*, double*, double*, float*, float*)': src/programs/ctffind/ctffind.cpp:2780:15: warning: variable 'ctf_diff_from_current_bin' set but not used [-Wunused-but-set-variable] 2780 | float ctf_diff_from_current_bin; | ^~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2856:1: warning: no return statement in function returning non-void [-Wreturn-type] 2856 | } | ^ In file included from src/core/core_headers.h:80, from src/core/curve.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/curve.cpp: In member function 'float Curve::ReturnLinearInterpolationFromI(float)': src/core/curve.cpp:367:15: warning: unused variable 'distance' [-Wunused-variable] 367 | float distance; | ^~~~~~~~ src/core/curve.cpp: In function 'void LS_POLY(float*, float*, int, int, float*, float*)': src/core/curve.cpp:1246:16: warning: variable 'dd' set but not used [-Wunused-but-set-variable] 1246 | double dd; | ^~ In file included from src/core/core_headers.h:80, from src/core/symmetry_matrix.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from image_trim.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/matrix.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::MultiplyPixelWise(Image&)': image_trim.cpp:115:13: warning: unused variable 'i' [-Wunused-variable] 115 | int i; | ^ image_trim.cpp: In member function 'void Image::WriteSlices(MRCFile*, long int, long int)': image_trim.cpp:1277:13: warning: unused variable 'number_of_slices' [-Wunused-variable] 1277 | int number_of_slices = (end_slice - start_slice) + 1; | ^~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::UpdateDistributionOfRealValues(EmpiricalDistribution*, float, bool, float, float, float)': image_trim.cpp:1953:15: warning: unused variable 'edge' [-Wunused-variable] 1953 | float edge; | ^~~~ In file included from src/core/core_headers.h:80, from src/core/mrc_header.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::ComputeAmplitudeSpectrumFull2D(Image*, bool, float)': image_trim.cpp:2711:13: warning: unused variable 'image_addr_i' [-Wunused-variable] 2711 | int image_addr_i; | ^~~~~~~~~~~~ image_trim.cpp:2712:13: warning: unused variable 'image_addr_j' [-Wunused-variable] 2712 | int image_addr_j; | ^~~~~~~~~~~~ image_trim.cpp:2713:13: warning: unused variable 'i_mate' [-Wunused-variable] 2713 | int i_mate; | ^~~~~~ image_trim.cpp:2714:13: warning: unused variable 'j_mate' [-Wunused-variable] 2714 | int j_mate; | ^~~~~~ image_trim.cpp: In member function 'void Image::SpectrumBoxConvolution(Image*, int, float)': image_trim.cpp:2783:13: warning: unused variable 'l' [-Wunused-variable] 2783 | int l; | ^ image_trim.cpp:2793:14: warning: unused variable 'address_within_input' [-Wunused-variable] 2793 | long address_within_input; | ^~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2599:1: warning: control reaches end of non-void function [-Wreturn-type] 2599 | } | ^ src/programs/ctffind/ctffind.cpp: In function 'int ReturnSpectrumBinNumber(int, float*, Image*, long int, Image*, float*)': src/programs/ctffind/ctffind.cpp:2930:1: warning: control reaches end of non-void function [-Wreturn-type] 2930 | } | ^ image_trim.cpp: In member function 'void Image::TaperEdges()': image_trim.cpp:3082:57: warning: variable 'second_dimension' set but not used [-Wunused-but-set-variable] 3082 | int second_dimension; | ^~~~~~~~~~~~~~~~ image_trim.cpp:3083:57: warning: variable 'third_dimension' set but not used [-Wunused-but-set-variable] 3083 | int third_dimension; | ^~~~~~~~~~~~~~~ image_trim.cpp: In member function 'void Image::InsertOtherImageAtSpecifiedPosition(Image*, int, int, int, float)': image_trim.cpp:3427:13: warning: unused variable 'kk_logi' [-Wunused-variable] 3427 | int kk_logi; | ^~~~~~~ image_trim.cpp:3430:13: warning: unused variable 'jj_logi' [-Wunused-variable] 3430 | int jj_logi; | ^~~~~~~ image_trim.cpp:3434:13: warning: unused variable 'ii_logi' [-Wunused-variable] 3434 | int ii_logi; | ^~~~~~~ image_trim.cpp: In member function 'void Image::ClipInto(Image*, float, bool, float, int, int, int)': image_trim.cpp:3482:13: warning: unused variable 'array_address' [-Wunused-variable] 3482 | int array_address = 0; | ^~~~~~~~~~~~~ image_trim.cpp:3500:16: warning: unused variable 'junk' [-Wunused-variable] 3500 | double junk; | ^~~~ In file included from src/core/core_headers.h:80, from src/core/randomnumbergenerator.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/globals.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/abstract_image_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/userinput.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp: In member function 'void UserInput::Init(const char*, wxString)': src/core/userinput.cpp:157:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 157 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp:159:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 159 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/userinput.cpp:161:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 161 | for (counter = 0; counter < strlen(program_name) / 2; counter++) wxPrintf(" "); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/functions.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp: In function 'bool GetMRCDetails(const char*, int&, int&, int&)': src/core/functions.cpp:65:13: warning: variable 'success' set but not used [-Wunused-but-set-variable] 65 | int success; | ^~~~~~~ src/core/functions.cpp: In function 'void SplitFileIntoDirectoryAndFile(wxString&, wxString&, wxString&)': src/core/functions.cpp:571:59: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 571 | for (int directory_counter = 0; directory_counter < directories.GetCount(); directory_counter++) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp: In function 'int ReturnAppropriateNumberOfThreads(int)': src/core/functions.cpp:961:7: warning: unused variable 'physicalProcs' [-Wunused-variable] 961 | int physicalProcs = 0; | ^~~~~~~~~~~~~ src/core/functions.cpp:962:7: warning: unused variable 'logicalProcessorCount' [-Wunused-variable] 962 | int logicalProcessorCount = 0; | ^~~~~~~~~~~~~~~~~~~~~ src/core/functions.cpp:963:7: warning: unused variable 'processorCoreCount' [-Wunused-variable] 963 | int processorCoreCount = 0; | ^~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-mrc_file.o `test -f 'src/core/mrc_file.cpp' || echo './'`src/core/mrc_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-tiff_file.o `test -f 'src/core/tiff_file.cpp' || echo './'`src/core/tiff_file.cpp src/core/matrix.cpp: In member function 'void RotationMatrix::ConvertToValidEulerAngles(float&, float&, float&)': src/core/matrix.cpp:369:80: warning: 'best_phi' may be used uninitialized [-Wmaybe-uninitialized] 369 | for (current_phi = best_phi - 1.0f; current_phi < old_best_phi + 1.0f; current_phi += 0.1f) | ~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:327:23: note: 'best_phi' was declared here 327 | float best_phi; | ^~~~~~~~ src/core/matrix.cpp:371:96: warning: 'best_theta' may be used uninitialized [-Wmaybe-uninitialized] 371 | for (current_theta = best_theta - 1.0f; current_theta < old_best_theta + 1.0f; current_theta += 0.1f) | ~~~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:328:23: note: 'best_theta' was declared here 328 | float best_theta; | ^~~~~~~~~~ src/core/matrix.cpp:373:96: warning: 'best_psi' may be used uninitialized [-Wmaybe-uninitialized] 373 | for (current_psi = best_psi - 5.0f; current_psi < old_best_psi + 5.0f; current_psi += 0.1f) | ~~~~~~~~~~~~~^~~~~~ src/core/matrix.cpp:329:23: note: 'best_psi' was declared here 329 | float best_psi; | ^~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-dm_file.o `test -f 'src/core/dm_file.cpp' || echo './'`src/core/dm_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-image_file.o `test -f 'src/core/image_file.cpp' || echo './'`src/core/image_file.cpp src/core/functions.cpp: At global scope: src/core/functions.cpp:782:12: warning: 'int numCoresAndLogicalProcs(int*, int*)' defined but not used [-Wunused-function] 782 | static int numCoresAndLogicalProcs(int *physical, int *logical) | ^~~~~~~~~~~~~~~~~~~~~~~ src/core/curve.cpp: In member function 'float Curve::ReturnMode()': src/core/curve.cpp:444:16: warning: 'mode' may be used uninitialized [-Wmaybe-uninitialized] 444 | return mode; | ^~~~ src/core/curve.cpp:442:30: note: 'mode' was declared here 442 | float maximum_value, mode; | ^~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-job_packager.o `test -f 'src/core/job_packager.cpp' || echo './'`src/core/job_packager.cpp src/programs/ctffind/ctffind.cpp: In function 'void ComputeFRCBetween1DSpectrumAndFit(int, double*, double*, float*, double*, double*, int)': src/programs/ctffind/ctffind.cpp:2222:51: warning: '*half_window_width[1]' may be used uninitialized [-Wmaybe-uninitialized] 2222 | half_window_width[0] = half_window_width[1]; | ~~~~~~~~~~~~~~~~~~~^ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-job_tracker.o `test -f 'src/core/job_tracker.cpp' || echo './'`src/core/job_tracker.cpp src/programs/ctffind/ctffind.cpp: In function 'bool RescaleSpectrumAndRotationalAverage(Image*, Image*, Image*, int, double*, double*, double*, float*, float*, int, int)': src/programs/ctffind/ctffind.cpp:2526:110: warning: 'normalisation_bin_number' may be used uninitialized [-Wmaybe-uninitialized] 2526 | actually_do_rescaling = (peak[normalisation_bin_number] - background[normalisation_bin_number]) > 0.0; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ src/programs/ctffind/ctffind.cpp:2439:13: note: 'normalisation_bin_number' was declared here 2439 | int normalisation_bin_number; | ^~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-run_profiles.o `test -f 'src/core/run_profiles.cpp' || echo './'`src/core/run_profiles.cpp src/core/functions.cpp: In function 'wxString ReceivewxStringFromSocket(wxSocketBase*)': src/core/functions.cpp:191:77: warning: 'length_of_string' may be used uninitialized [-Wmaybe-uninitialized] 191 | unsigned char *transfer_buffer = new unsigned char[length_of_string + 1]; // + 1 for the terminating null character; | ~~~~~~~~~~~~~~~~~^~~ src/core/functions.cpp:181:13: note: 'length_of_string' declared here 181 | int length_of_string; | ^~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/mrc_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/dm_file.cpp:6: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/tiff_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/tiff_file.cpp: In member function 'bool TiffFile::ReadLogicalDimensionsFromDisk()': src/core/tiff_file.cpp:108:76: warning: comparison of integer expressions of different signedness: 'int' and 'uint32' {aka 'unsigned int'} [-Wsign-compare] 108 | if (current_x != original_x || logical_dimension_y != current_y) | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ src/core/tiff_file.cpp: In member function 'virtual void TiffFile::ReadSlicesFromDisk(int, int, float*)': src/core/tiff_file.cpp:149:80: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 149 | for (unsigned int directory_counter = start_slice-1; directory_counter < end_slice; directory_counter ++ ) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ src/core/dm_file.cpp: In destructor 'DMFile::~DMFile()': src/core/dm_file.cpp:49:13: warning: statement has no effect [-Wunused-value] 49 | true; | ^ src/core/dm_file.cpp: In member function 'int DMFile::readDM(wxString, unsigned char*, bool, int)': src/core/dm_file.cpp:162:25: warning: statement is a reference, not call, to function 'abort' [-Waddress] 162 | abort; | ^~~~~ src/core/dm_file.cpp:162:25: warning: statement has no effect [-Wunused-value] src/core/dm_file.cpp: In member function 'int DMFile::readTagGroupWithVersion(std::ifstream*, unsigned char*, bool, int)': src/core/dm_file.cpp:303:76: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 303 | if ( sb ) std::cout << "Warning: Swapping header bytes" << endl; | ^~~~ In file included from src/core/core_headers.h:47: /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:304:56: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 304 | std::cout << "Version: " << version << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:305:64: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 305 | std::cout << "File length: " << file_length << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:306:62: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 306 | std::cout << "Endianness: " << endianness << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:318:78: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 318 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:319:151: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 319 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:320:59: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 320 | std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:334:69: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 334 | if ( show == 2 ) std::cout << "<" << buf << "/>" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:337:39: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 337 | if ( show == 1 ) std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:338:53: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 338 | if ( show == 2 ) std::cout << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::readTagGroupData(std::ifstream*, int, unsigned char*, bool)': src/core/dm_file.cpp:386:21: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 386 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:396:21: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 396 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::readTag(std::ifstream*, int, unsigned char*, bool, int&)': src/core/dm_file.cpp:429:49: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 429 | std::cout << "\tlen=" << len << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:430:63: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 430 | std::cerr << "Error: tag length too long!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:445:30: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 445 | std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:446:29: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 446 | for ( i=0; i" << tag << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:473:47: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 473 | if ( show == 1 ) std::cout << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:484:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 484 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:492:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 492 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:499:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 499 | for ( i=0; i" << buf << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:509:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 509 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:517:53: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 517 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:526:53: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 526 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:555:45: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] 555 | for ( i=0; i" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:559:86: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 559 | std::cerr << "Error: Data type " << dt << " not defined!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:589:92: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 589 | if ( show == 1 ) std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:593:130: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 593 | if ( show == 1 ) std::cout << "\t" << tag << "=" << samplingX() << samplingY() << samplingZ() << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:598:92: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 598 | if ( show == 1 ) std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:602:113: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 602 | if ( show == 1 ) std::cout << "\t" << "\t" << "=" << arr[0] << "x" << arr[1] << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:605:113: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 605 | if ( show == 1 ) std::cout << "\t" << "\t" << "=" << arr[0] << "x" << arr[1] << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:612:83: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 612 | std::cout << "\t" << tag << "=" << val << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:613:111: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 613 | for ( i=0; i" << dvalue << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp:664:79: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 664 | std::cout << "" << ivalue << "" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ src/core/dm_file.cpp: In member function 'int DMFile::dm3_type_length(int)': src/core/dm_file.cpp:687:99: warning: the address of 'wxTextOutputStream& endl(wxTextOutputStream&)' will never be NULL [-Waddress] 687 | std::cerr << "Error: Data type " << dm3_type << " length not defined!" << endl; | ^~~~ /usr/include/wx-3.2/wx/txtstrm.h:25:38: note: 'wxTextOutputStream& endl(wxTextOutputStream&)' declared here 25 | WXDLLIMPEXP_BASE wxTextOutputStream &endl( wxTextOutputStream &stream ); | ^~~~ In file included from src/core/core_headers.h:80, from src/core/image_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual bool ImageFile::OpenFile(std::string, bool, bool)': src/core/image_file.cpp:58:158: warning: statement is a reference, not call, to function 'abort' [-Waddress] 58 | default: MyPrintWithDetails("Unsupported file type\n"); MyDebugAssertTrue(false,"Unsupported file type: %s\n",filename.GetFullPath().ToStdString()); abort; break; | ^~~~~ src/core/image_file.cpp:58:158: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual void ImageFile::ReadSlicesFromDisk(int, int, float*)': src/core/image_file.cpp:85:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 85 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:85:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual void ImageFile::WriteSlicesToDisk(int, int, float*)': src/core/image_file.cpp:101:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 101 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:101:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnXSize()': src/core/image_file.cpp:113:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 113 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:113:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnYSize()': src/core/image_file.cpp:124:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 124 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:124:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnZSize()': src/core/image_file.cpp:135:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 135 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:135:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnNumberOfSlices()': src/core/image_file.cpp:146:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 146 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:146:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual float ImageFile::ReturnPixelSize()': src/core/image_file.cpp:157:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 157 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:157:65: warning: statement has no effect [-Wunused-value] src/core/image_file.cpp: In member function 'virtual bool ImageFile::IsOpen()': src/core/image_file.cpp:168:65: warning: statement is a reference, not call, to function 'abort' [-Waddress] 168 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~ src/core/image_file.cpp:168:65: warning: statement has no effect [-Wunused-value] src/core/dm_file.cpp: In member function 'virtual bool DMFile::OpenFile(std::string, bool, bool)': src/core/dm_file.cpp:57:15: warning: 'fake_pointer' is used uninitialized [-Wuninitialized] 57 | readDM(wxString(wanted_filename), fake_pointer, false); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/dm_file.cpp:56:24: note: 'fake_pointer' was declared here 56 | unsigned char *fake_pointer; | ^~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/job_packager.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:52: src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnXSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:113:18: note: in expansion of macro 'MyPrintWithDetails' 113 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnYSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:124:18: note: in expansion of macro 'MyPrintWithDetails' 124 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnZSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:135:18: note: in expansion of macro 'MyPrintWithDetails' 135 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual int ImageFile::ReturnNumberOfSlices()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:146:18: note: in expansion of macro 'MyPrintWithDetails' 146 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual float ImageFile::ReturnPixelSize()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:157:18: note: in expansion of macro 'MyPrintWithDetails' 157 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/image_file.cpp: In member function 'virtual bool ImageFile::IsOpen()': src/core/defines.h:25:65: warning: control reaches end of non-void function [-Wreturn-type] 25 | #define MyPrintWithDetails(...) {wxPrintf(__VA_ARGS__); wxPrintf("From %s:%i\n%s\n", __FILE__,__LINE__,__PRETTY_FUNCTION__);} | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/image_file.cpp:168:18: note: in expansion of macro 'MyPrintWithDetails' 168 | default: MyPrintWithDetails("Unsupported file type\n"); abort; break; | ^~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void JobPackage::SendJobPackage(wxSocketBase*)': src/core/job_packager.cpp:67:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 67 | for (counter = 0; counter < my_profile.executable_name.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:88:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 88 | for (counter = 0; counter < my_profile.gui_address.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:108:36: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 108 | for (counter = 0; counter < my_profile.controller_address.Length(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:14:13: warning: unused variable 'number_of_arguments' [-Wunused-variable] 14 | int number_of_arguments; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:16:13: warning: unused variable 'temp_job_number' [-Wunused-variable] 16 | int temp_job_number; | ^~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:55: src/core/job_packager.cpp: In member function 'void JobPackage::ReceiveJobPackage(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:348:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 348 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:358:13: warning: unused variable 'wanted_number_of_processes' [-Wunused-variable] 358 | int wanted_number_of_processes; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:365:13: warning: unused variable 'number_of_arguments' [-Wunused-variable] 365 | int number_of_arguments; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void RunJob::SendJob(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:838:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 838 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp: In member function 'void RunJob::RecieveJob(wxSocketBase*)': src/core/socket_codes.h:6:42: warning: unused variable 'socket_input_buffer' [-Wunused-variable] 6 | #define SETUP_SOCKET_CODES unsigned char socket_input_buffer[SOCKET_CODE_SIZE]; | ^~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:1019:9: note: in expansion of macro 'SETUP_SOCKET_CODES' 1019 | SETUP_SOCKET_CODES | ^~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/job_tracker.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_tracker.cpp: In member function 'void JobTracker::MarkJobFinished()': src/core/job_tracker.cpp:62:14: warning: unused variable 'seconds_per_job_per_process_since_last_update' [-Wunused-variable] 62 | long seconds_per_job_per_process_since_last_update; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_tracker.cpp:63:14: warning: unused variable 'time_since_last_update' [-Wunused-variable] 63 | long time_since_last_update = current_time - last_update_time; | ^~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp: In member function 'virtual bool CtffindApp::DoCalculation()': src/programs/ctffind/ctffind.cpp:2029:101: warning: array subscript 0 is outside array bounds of 'double [0]' [-Warray-bounds=] 2029 | results_array[5] = pixel_size_for_fitting / spatial_frequency[last_bin_with_good_fit]; // The resolution (Angstroms) up to which Thon rings are well fit by the CTF | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ cc1plus: note: source object is likely at address zero src/programs/ctffind/ctffind.cpp:1875:164: warning: array subscript 0 is outside array bounds of 'double [0]' [-Warray-bounds=] 1875 | normalization_radius_max = std::max(normalization_radius_max,float(average_spectrum->logical_x_dimension * spatial_frequency[last_bin_with_good_fit])); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ cc1plus: note: source object is likely at address zero src/core/dm_file.cpp: In member function 'int DMFile::readTag(std::ifstream*, int, unsigned char*, bool, int&)': src/core/dm_file.cpp:566:55: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] 566 | datatype_from_dm3_type((DMDataType)val); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ src/core/dm_file.cpp:415:33: note: 'val' was declared here 415 | double val, arr[256]; | ^~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-myapp.o `test -f 'src/core/myapp.cpp' || echo './'`src/core/myapp.cpp src/core/tiff_file.cpp:186:96: warning: 'strip_counter' may be used uninitialized [-Wmaybe-uninitialized] 186 | number_of_bytes_placed_in_buffer = TIFFReadEncodedStrip(tif, strip_counter, (char *) buf, (tsize_t) -1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/tiff_file.cpp:146:18: note: 'strip_counter' was declared here 146 | tstrip_t strip_counter; | ^~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2008:120: warning: 'output_text_avrot' may be used uninitialized [-Wmaybe-uninitialized] 2008 | wxPrintf("Detailed results, including 1D fit profiles : %s\n",output_text_avrot->ReturnFilename()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ src/programs/ctffind/ctffind.cpp:856:34: note: 'output_text_avrot' was declared here 856 | NumericTextFile *output_text_avrot; | ^~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2031:9: warning: 'last_bin_without_aliasing' may be used uninitialized [-Wmaybe-uninitialized] 2031 | if (last_bin_without_aliasing == 0) | ^~ src/programs/ctffind/ctffind.cpp:904:49: note: 'last_bin_without_aliasing' was declared here 904 | int last_bin_without_aliasing; | ^~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:969:98: warning: 'output_text' may be used uninitialized [-Wmaybe-uninitialized] 969 | wxPrintf("Results will be written to this file: %s\n",output_text->ReturnFilename()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ src/programs/ctffind/ctffind.cpp:855:34: note: 'output_text' was declared here 855 | NumericTextFile *output_text; | ^~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:1961:125: warning: 'my_progress_bar' may be used uninitialized [-Wmaybe-uninitialized] 1961 | if ( (!old_school_input) && number_of_micrographs > 1 && is_running_locally) my_progress_bar->Update(current_micrograph_number); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:854:42: note: 'my_progress_bar' was declared here 854 | ProgressBar *my_progress_bar; | ^~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:1157:25: warning: 'resampling_is_necessary' may be used uninitialized [-Wmaybe-uninitialized] 1157 | if (resampling_is_necessary) | ^~ src/programs/ctffind/ctffind.cpp:869:41: note: 'resampling_is_necessary' was declared here 869 | bool resampling_is_necessary; | ^~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2072:33: warning: 'conjugate_gradient_minimizer' may be used uninitialized [-Wmaybe-uninitialized] 2072 | if (! defocus_is_known) delete conjugate_gradient_minimizer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:884:30: note: 'conjugate_gradient_minimizer' was declared here 884 | ConjugateGradient *conjugate_gradient_minimizer; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:2022:26: warning: 'final_score' may be used uninitialized [-Wmaybe-uninitialized] 2022 | results_array[4] = final_score; // CTFFIND score | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ src/programs/ctffind/ctffind.cpp:907:41: note: 'final_score' was declared here 907 | float final_score; | ^~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/run_profiles.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/job_packager.cpp:1051:60: warning: 'transfer_size' may be used uninitialized [-Wmaybe-uninitialized] 1051 | unsigned char *transfer_buffer = new unsigned char[transfer_size]; | ^~~~~~~~~~~~~ src/core/job_packager.cpp:1024:14: note: 'transfer_size' declared here 1024 | long transfer_size; | ^~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-empirical_distribution.o `test -f 'src/core/empirical_distribution.cpp' || echo './'`src/core/empirical_distribution.cpp In member function 'void JobResult::SetResult(int, float*)', inlined from 'JobResult::JobResult(int, float*)' at src/core/job_packager.cpp:1416:11: src/core/job_packager.cpp:1458:33: warning: '*this.JobResult::result_data' is used uninitialized [-Wuninitialized] 1458 | if (result_size != 0 || result_data != NULL) | ^~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-ctf.o `test -f 'src/core/ctf.cpp' || echo './'`src/core/ctf.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-numeric_text_file.o `test -f 'src/core/numeric_text_file.cpp' || echo './'`src/core/numeric_text_file.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-progressbar.o `test -f 'src/core/progressbar.cpp' || echo './'`src/core/progressbar.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-downhill_simplex.o `test -f 'src/core/downhill_simplex.cpp' || echo './'`src/core/downhill_simplex.cpp g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-brute_force_search.o `test -f 'src/core/brute_force_search.cpp' || echo './'`src/core/brute_force_search.cpp src/core/brute_force_search.cpp:246: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 246 | #pragma omp parallel for default(none) num_threads(numThreads) shared( all_values, all_local_best_values, all_scores,numThreads,num_iterations_completed,my_progress_bar) private(current_iteration, current_values, current_values_for_local_minimization, i, accuracy_for_local_minimization) src/core/brute_force_search.cpp:257: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 257 | #pragma omp atomic g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-va04.o `test -f 'src/core/va04.cpp' || echo './'`src/core/va04.cpp In file included from src/core/core_headers.h:80, from src/core/myapp.cpp:2: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp: In member function 'virtual bool MyApp::OnInit()': src/core/myapp.cpp:170:35: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 170 | for (counter = 0; counter < possible_controller_addresses.GetCount(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp: In member function 'void MyApp::OnSlaveSocketEvent(wxSocketEvent&)': src/core/myapp.cpp:779:55: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 779 | for (int counter = 0; counter < temp_array.GetCount(); counter++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ src/core/myapp.cpp:664:16: warning: unused variable 'result' [-Wunused-variable] 664 | float *result; | ^~~~~~ In file included from src/core/core_headers.h:80, from src/core/ctf.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/empirical_distribution.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -DPACKAGE_NAME=\"ctffind\" -DPACKAGE_TARNAME=\"ctffind\" -DPACKAGE_VERSION=\"4.1.14\" -DPACKAGE_STRING=\"ctffind\ 4.1.14\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ctffind\" -DVERSION=\"4.1.14\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -Dwx_is_available=1 -I. -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o src/core/ctffind-conjugate_gradient.o `test -f 'src/core/conjugate_gradient.cpp' || echo './'`src/core/conjugate_gradient.cpp In file included from src/core/core_headers.h:80, from src/core/progressbar.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/numeric_text_file.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/downhill_simplex.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/brute_force_search.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp: In member function 'void BruteForceSearch::Run()': src/core/brute_force_search.cpp:180:25: warning: unused variable 'maxThreads' [-Wunused-variable] 180 | int numThreads, maxThreads = 12; | ^~~~~~~~~~ In member function 'void DownhillSimplex::free_dmatrix(double**, long int, long int, long int, long int)', inlined from 'DownhillSimplex::~DownhillSimplex()' at src/core/downhill_simplex.cpp:25:15: src/core/downhill_simplex.cpp:327:35: warning: 'void free(void*)' called on pointer '*(double**)((char*) + *4)' with nonzero offset 8 [-Wfree-nonheap-object] 327 | for(i=nrh;i>=nrl;i--) free((char*) (m[i]+ncl)); | ~~~~^~~~~~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp:328:13: warning: 'void free(void*)' called on pointer '*this.DownhillSimplex::initial_values' with nonzero offset 4 [-Wfree-nonheap-object] 328 | free((char*) (m+nrl)); | ~~~~^~~~~~~~~~~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'double DownhillSimplex::amotry(double**, double*, double*, long int, double (*)(double*), long int, double)' at src/core/downhill_simplex.cpp:168:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'double DownhillSimplex::amotry(double**, double*, double*, long int, double (*)(double*), long int, double)': src/core/downhill_simplex.cpp:156:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 156 | ptry=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'void DownhillSimplex::amoeba(double**, double*, long int, double, double (*)(double*), long int*)' at src/core/downhill_simplex.cpp:91:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'void DownhillSimplex::amoeba(double**, double*, long int, double, double (*)(double*), long int*)': src/core/downhill_simplex.cpp:42:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 42 | psum=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'double DownhillSimplex::amotry(double**, double*, double*, long int, void*, double (*)(void*, double*), long int, double)' at src/core/downhill_simplex.cpp:190:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'double DownhillSimplex::amotry(double**, double*, double*, long int, void*, double (*)(void*, double*), long int, double)': src/core/downhill_simplex.cpp:178:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 178 | ptry=dvector(1,ndim); | ~~~~~~~^~~~~~~~ In member function 'void DownhillSimplex::free_dvector(double*, long int, long int)', inlined from 'void DownhillSimplex::amoeba(double**, double*, long int, double, void*, double (*)(void*, double*), long int*)' at src/core/downhill_simplex.cpp:148:14: src/core/downhill_simplex.cpp:320:13: warning: 'void free(void*)' called on pointer '' with nonzero offset 8 [-Wfree-nonheap-object] 320 | free((char*) (v+nl)); | ~~~~^~~~~~~~~~~~~~~~ src/core/downhill_simplex.cpp: In member function 'void DownhillSimplex::amoeba(double**, double*, long int, double, void*, double (*)(void*, double*), long int*)': src/core/downhill_simplex.cpp:99:17: note: returned from 'double* DownhillSimplex::dvector(long int, long int)' 99 | psum=dvector(1,ndim); | ~~~~~~~^~~~~~~~ src/core/va04.cpp: In function 'int va04a_(int*, float*, float*, int*, float (*)(void*, float*), void*, float*, int*, int*, int*, float*)': src/core/va04.cpp:74:33: warning: empty parentheses were disambiguated as a function declaration [-Wvexing-parse] 74 | int s_wsfe(cilist *), e_wsfe(); | ^~ src/core/va04.cpp:74:33: note: remove parentheses to default-initialize a variable 74 | int s_wsfe(cilist *), e_wsfe(); | ^~ | -- src/core/va04.cpp:74:33: note: or replace parentheses with braces to value-initialize a variable src/core/va04.cpp:100:19: warning: unused variable 'io___32' [-Wunused-variable] 100 | static cilist io___32 = { 0, 6, 0, fmt_19, 0 }; | ^~~~~~~ src/core/va04.cpp:101:19: warning: unused variable 'io___42' [-Wunused-variable] 101 | static cilist io___42 = { 0, 6, 0, fmt_52, 0 }; | ^~~~~~~ src/core/va04.cpp:102:19: warning: unused variable 'io___45' [-Wunused-variable] 102 | static cilist io___45 = { 0, 6, 0, fmt_80, 0 }; | ^~~~~~~ src/core/myapp.cpp: In member function 'virtual void* CalculateThread::Entry()': src/core/myapp.cpp:1612:17: warning: 'thread_action_copy' may be used uninitialized [-Wmaybe-uninitialized] 1612 | if (thread_action_copy == THREAD_START_NEXT_JOB) | ^~ src/core/myapp.cpp:1588:13: note: 'thread_action_copy' was declared here 1588 | int thread_action_copy; | ^~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp:259:56: warning: 'my_progress_bar' may be used uninitialized [-Wmaybe-uninitialized] 259 | my_progress_bar->Update(num_iterations_completed); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/brute_force_search.cpp:181:22: note: 'my_progress_bar' was declared here 181 | ProgressBar *my_progress_bar; | ^~~~~~~~~~~~~~~ src/core/va04.cpp: At global scope: src/core/va04.cpp:21:12: warning: 'c__1' defined but not used [-Wunused-variable] 21 | static int c__1 = 1; | ^~~~ src/core/numeric_text_file.cpp: In member function 'void NumericTextFile::Init()': src/core/numeric_text_file.cpp:167:34: warning: 'current_records_per_line' may be used uninitialized [-Wmaybe-uninitialized] 167 | records_per_line = current_records_per_line; | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/numeric_text_file.cpp:106:21: note: 'current_records_per_line' was declared here 106 | int current_records_per_line; | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from src/core/core_headers.h:80, from src/core/conjugate_gradient.cpp:1: src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnThetaBin(float)': src/core/angular_distribution_histogram.h:33:47: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 33 | for (theta_bin = 0; theta_bin < theta_boundaries.GetCount(); theta_bin++) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/angular_distribution_histogram.h: In member function 'int AngularDistributionHistogram::ReturnPhiBin(float)': src/core/angular_distribution_histogram.h:57:43: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] 57 | for (phi_bin = 0; phi_bin < phi_boundaries.GetCount(); phi_bin++) | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/core/conjugate_gradient.cpp: In member function 'float ConjugateGradient::Run()': src/core/conjugate_gradient.cpp:72:13: warning: variable 'va04_success' set but not used [-Wunused-but-set-variable] 72 | int va04_success = 0; | ^~~~~~~~~~~~ /bin/bash ./libtool --tag=CXX --mode=link g++ -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -L/usr/lib/i386-linux-gnu -pthread -lwx_baseu-3.2 -lwx_baseu_net-3.2 -Wl,-z,relro -Wl,-z,now -o ctffind src/programs/ctffind/ctffind-ctffind.o src/core/ctffind-functions.o src/core/ctffind-globals.o src/core/ctffind-randomnumbergenerator.o src/core/ctffind-userinput.o src/core/ctffind-curve.o ctffind-image_trim.o src/core/ctffind-matrix.o src/core/ctffind-symmetry_matrix.o src/core/ctffind-abstract_image_file.o src/core/ctffind-mrc_header.o src/core/ctffind-mrc_file.o src/core/ctffind-tiff_file.o src/core/ctffind-dm_file.o src/core/ctffind-image_file.o src/core/ctffind-job_packager.o src/core/ctffind-job_tracker.o src/core/ctffind-run_profiles.o src/core/ctffind-myapp.o src/core/ctffind-empirical_distribution.o src/core/ctffind-ctf.o src/core/ctffind-numeric_text_file.o src/core/ctffind-progressbar.o src/core/ctffind-downhill_simplex.o src/core/ctffind-brute_force_search.o src/core/ctffind-va04.o src/core/ctffind-conjugate_gradient.o -ltiff -ljpeg -lz -ldl -lfftw3f libtool: link: g++ -I/usr/lib/i386-linux-gnu/wx/include/gtk3-unicode-3.2 -I/usr/include/wx-3.2 -D_FILE_OFFSET_BITS=64 -DWXUSINGDLL -D__WXGTK__ -DwxUSE_GUI=0 -g -O2 -ffile-prefix-map=/build/reproducible-path/ctffind-4.1.14=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -funroll-loops -O3 -Wall -pipe -fexpensive-optimizations -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o ctffind src/programs/ctffind/ctffind-ctffind.o src/core/ctffind-functions.o src/core/ctffind-globals.o src/core/ctffind-randomnumbergenerator.o src/core/ctffind-userinput.o src/core/ctffind-curve.o ctffind-image_trim.o src/core/ctffind-matrix.o src/core/ctffind-symmetry_matrix.o src/core/ctffind-abstract_image_file.o src/core/ctffind-mrc_header.o src/core/ctffind-mrc_file.o src/core/ctffind-tiff_file.o src/core/ctffind-dm_file.o src/core/ctffind-image_file.o src/core/ctffind-job_packager.o src/core/ctffind-job_tracker.o src/core/ctffind-run_profiles.o src/core/ctffind-myapp.o src/core/ctffind-empirical_distribution.o src/core/ctffind-ctf.o src/core/ctffind-numeric_text_file.o src/core/ctffind-progressbar.o src/core/ctffind-downhill_simplex.o src/core/ctffind-brute_force_search.o src/core/ctffind-va04.o src/core/ctffind-conjugate_gradient.o -L/usr/lib/i386-linux-gnu -lwx_baseu-3.2 -lwx_baseu_net-3.2 -ltiff -ljpeg -lz -ldl -lfftw3f -pthread make[1]: Leaving directory '/build/reproducible-path/ctffind-4.1.14' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ctffind-4.1.14' no automatic installation make[1]: Leaving directory '/build/reproducible-path/ctffind-4.1.14' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ctffind' in '../ctffind_4.1.14-3_i386.deb'. dpkg-deb: building package 'ctffind-dbgsym' in '../ctffind-dbgsym_4.1.14-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../ctffind_4.1.14-3_i386.buildinfo dpkg-genchanges --build=binary -O../ctffind_4.1.14-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10363 and its subdirectories I: Current time: Thu Oct 24 13:29:02 -12 2024 I: pbuilder-time-stamp: 1729819742 Fri Oct 25 01:29:03 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Oct 25 01:29:03 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Oct 25 01:30:14 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Oct 25 01:30:14 UTC 2024 I: ctffind_4.1.14-3_i386.changes: Format: 1.8 Date: Wed, 17 Jul 2024 12:01:49 +0000 Source: ctffind Binary: ctffind ctffind-dbgsym Architecture: i386 Version: 4.1.14-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alex Myczko Description: ctffind - fast and accurate defocus estimation from electron micrographs Changes: ctffind (4.1.14-3) unstable; urgency=medium . * Bump standards version to 4.7.0. Checksums-Sha1: e940ec3fff24ba99a2e84309617b5075cbf95178 2601332 ctffind-dbgsym_4.1.14-3_i386.deb e1b7adeba3138ab553f137acc0cdadcd1b764fa1 10660 ctffind_4.1.14-3_i386.buildinfo 581e73ad19cd9c40d6648c29897fbc3dc0ac9c62 318400 ctffind_4.1.14-3_i386.deb Checksums-Sha256: 4d3bc11ea13cbfbfde9f793bdfc572dbb7cd2acfee4ae84bac93e49f14db201d 2601332 ctffind-dbgsym_4.1.14-3_i386.deb 5a9db2878b98bc9ba1cf2952d6c75aac389e6da50ef6a66e3626b31af6816e53 10660 ctffind_4.1.14-3_i386.buildinfo f648a5d94d81d6768b2e1750bc7add6ead057adc373dfccf93ea79d8bd5386a0 318400 ctffind_4.1.14-3_i386.deb Files: e017d05c0daa7dc26ac174bc939760ca 2601332 debug optional ctffind-dbgsym_4.1.14-3_i386.deb 659b0a1b00d30e7403dd83bf007b4786 10660 science optional ctffind_4.1.14-3_i386.buildinfo 2e1e61285d6e39227b7a331c7cb69ac7 318400 science optional ctffind_4.1.14-3_i386.deb Fri Oct 25 01:30:16 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_3-40087.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.rdNvoHwe/ctffind_4.1.14-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.rdNvoHwe/ctffind_4.1.14-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.rdNvoHwe/ctffind_4.1.14-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.rdNvoHwe/b1/ctffind_4.1.14-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.rdNvoHwe/b2/ctffind_4.1.14-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.423s) 0.423s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.049s) 0.049s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 781ms CPU time consumed: 780ms Fri Oct 25 01:30:17 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 25 01:30:17 UTC 2024 I: ctffind from unstable built successfully and reproducibly on i386. Fri Oct 25 01:30:18 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Oct 25 01:30:18 UTC 2024 I: Submitting 12K b1/ctffind_4.1.14-3_i386.buildinfo.asc Fri Oct 25 01:30:19 UTC 2024 I: Submitting 12K b2/ctffind_4.1.14-3_i386.buildinfo.asc Fri Oct 25 01:30:20 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Oct 25 01:30:20 UTC 2024 I: Done submitting .buildinfo files. Fri Oct 25 01:30:20 UTC 2024 I: Removing signed ctffind_4.1.14-3_i386.buildinfo.asc files: removed './b1/ctffind_4.1.14-3_i386.buildinfo.asc' removed './b2/ctffind_4.1.14-3_i386.buildinfo.asc'