Tue Oct 15 05:41:03 UTC 2024 I: starting to build biomaj3-cli/unstable/i386 on jenkins on '2024-10-15 05:40' Tue Oct 15 05:41:03 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_13/45276/console.log Tue Oct 15 05:41:03 UTC 2024 I: Downloading source for unstable/biomaj3-cli=3.1.11-5 --2024-10-15 05:41:03-- http://deb.debian.org/debian/pool/main/b/biomaj3-cli/biomaj3-cli_3.1.11-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2140 (2.1K) [text/prs.lines.tag] Saving to: ‘biomaj3-cli_3.1.11-5.dsc’ 0K .. 100% 295M=0s 2024-10-15 05:41:03 (295 MB/s) - ‘biomaj3-cli_3.1.11-5.dsc’ saved [2140/2140] Tue Oct 15 05:41:03 UTC 2024 I: biomaj3-cli_3.1.11-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biomaj3-cli Binary: python3-biomaj3-cli Architecture: all Version: 3.1.11-5 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/genouest/biomaj-cli Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/biomaj3-cli Vcs-Git: https://salsa.debian.org/med-team/biomaj3-cli.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-requests, python3-setuptools, python3-biomaj3-core, python3-biomaj3-daemon Package-List: python3-biomaj3-cli deb python optional arch=all Checksums-Sha1: 518af72a743285d7153062262396c926bda532af 16508 biomaj3-cli_3.1.11.orig.tar.xz 4d0603c3fb8fbc02d1c91623c57cf6b933e45636 13308 biomaj3-cli_3.1.11-5.debian.tar.xz Checksums-Sha256: 4327f6c3186168cb8a76acf015cd29f0b11e37e0b735a84d9949aa32dd2f2940 16508 biomaj3-cli_3.1.11.orig.tar.xz c31d14e134fd70cf1cf9175477299880ecb8b4b521457a1fd13a2beb55c36ed3 13308 biomaj3-cli_3.1.11-5.debian.tar.xz Files: 8db1849df1ec7b5e182570b02fad8ef1 16508 biomaj3-cli_3.1.11.orig.tar.xz 36fe02c4deb6e3239e6ca0f12d6046ed 13308 biomaj3-cli_3.1.11-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmaJzO4RHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBozeg/+MBgNHueVewcS4tX11Pl/pUuRsaTdxkAZ q/PBihRxl4pHcpDbmZRBL1A9+xCzwol1F0APP78eQemKHbaJTLSCWEgy6f1bmB0n MsMwyQr6/xlrt4yAlA0fL/LHicTYcqjVzGI2HdYxzBMWoADZ15C+R7sz7A3Bsinz X+NVsNr1elL+wLYDlfHEqBvirUPGTQI3K+vOHau8OOsg/XAoyUvqtxOyXXRHGZvH Te3LIWxiQ971wH5ThhgHwKtHeca9qebMThVpIZ+6gUB5nIY+SB8iZ8kXiN4Awm+0 GVqtlNUrEEEhuLVDtnFCiGU/Wqjo+2yn3Nk1hkcHebpBBwiUGqXcNhxNkR9c0AEN rK/SIJpATRFsGPZ6VGRICTS7ae2WrnBgsY76Ug+Ap9EpUx2IAU2w2gItir/+LGVQ T8O7crfdx8dkmBxBJOsH8GUpc9wDUkCOVCxLuEDrBJKmg8UZdANkoB8Ux62oomOe NnvEFe8EqHEm8+luTnICU4gl8QLI+tchffB6alanvHO3Y22eCCZJiZFMHTBWvNR2 e7ch1xuJ4h4HSYnUY0M/nFrJKGiWZDx/mRjMBtMoJmm5KB1H1oJhf1IZZUDOjC6m QPCgRTnf0eTP7r1tUOma7eMDafT1qOz/jQLMGFASmHlFrFFrzkWvlM/Ce2S2MC+R Kd3OUnI1gWY= =3+CB -----END PGP SIGNATURE----- Tue Oct 15 05:41:03 UTC 2024 I: Checking whether the package is not for us Tue Oct 15 05:41:03 UTC 2024 I: Starting 1st build on remote node infom07-i386.debian.net. Tue Oct 15 05:41:03 UTC 2024 I: Preparing to do remote build '1' on infom07-i386.debian.net. Tue Oct 15 05:43:48 UTC 2024 I: Deleting $TMPDIR on infom07-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 14 17:41:06 -12 2024 I: pbuilder-time-stamp: 1728970866 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [biomaj3-cli_3.1.11-5.dsc] I: copying [./biomaj3-cli_3.1.11.orig.tar.xz] I: copying [./biomaj3-cli_3.1.11-5.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Jul 6 23:02:06 2024 gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A gpgv: issuer "tchet@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biomaj3-cli_3.1.11-5.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-cli in biomaj3-cli-3.1.11 dpkg-source: info: unpacking biomaj3-cli_3.1.11.orig.tar.xz dpkg-source: info: unpacking biomaj3-cli_3.1.11-5.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26169/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='451c0922488b49a3a13e674b4d60099d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='26169' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.PRdsWwz4/pbuilderrc_h5fw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.PRdsWwz4/b1 --logfile b1/build.log biomaj3-cli_3.1.11-5.dsc' SUDO_GID='111' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom07-i386 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/26169/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-requests, python3-setuptools, python3-biomaj3-core, python3-biomaj3-daemon dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 21866 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-daemon; however: Package python3-biomaj3-daemon is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3{a} python3-biomaj3-cli{a} python3-biomaj3-core{a} python3-biomaj3-daemon{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-consul{a} python3-dateutil{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-elasticsearch{a} python3-flask{a} python3-flask-cors{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-influxdb{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-msgpack{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-six{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sphinx-rtd-theme-common{a} tzdata{a} unzip{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-dotenv python3-gridfs python3-openssl python3-pyinotify python3-pymongo-ext python3-simplejson wget 0 packages upgraded, 140 newly installed, 0 to remove and 0 not upgraded. Need to get 41.9 MB of archives. After unpacking 161 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main i386 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main i386 libpython3.12-minimal i386 3.12.7-1 [813 kB] Get: 3 http://deb.debian.org/debian unstable/main i386 libexpat1 i386 2.6.3-1 [107 kB] Get: 4 http://deb.debian.org/debian unstable/main i386 python3.12-minimal i386 3.12.7-1 [2239 kB] Get: 5 http://deb.debian.org/debian unstable/main i386 python3-minimal i386 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian unstable/main i386 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian unstable/main i386 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian unstable/main i386 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian unstable/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 10 http://deb.debian.org/debian unstable/main i386 libcom-err2 i386 1.47.1-1 [23.1 kB] Get: 11 http://deb.debian.org/debian unstable/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 12 http://deb.debian.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-3 [9432 B] Get: 13 http://deb.debian.org/debian unstable/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 14 http://deb.debian.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 15 http://deb.debian.org/debian unstable/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian unstable/main i386 libtirpc3t64 i386 1.3.4+ds-1.3 [90.2 kB] Get: 17 http://deb.debian.org/debian unstable/main i386 libnsl2 i386 1.3.0-3+b2 [42.4 kB] Get: 18 http://deb.debian.org/debian unstable/main i386 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian unstable/main i386 libreadline8t64 i386 8.2-5 [173 kB] Get: 20 http://deb.debian.org/debian unstable/main i386 libpython3.12-stdlib i386 3.12.7-1 [1966 kB] Get: 21 http://deb.debian.org/debian unstable/main i386 python3.12 i386 3.12.7-1 [671 kB] Get: 22 http://deb.debian.org/debian unstable/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian unstable/main i386 python3 i386 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian unstable/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main i386 openssl i386 3.3.2-1 [1386 kB] Get: 26 http://deb.debian.org/debian unstable/main i386 ca-certificates all 20240203 [158 kB] Get: 27 http://deb.debian.org/debian unstable/main i386 libmagic-mgc i386 1:5.45-3 [314 kB] Get: 28 http://deb.debian.org/debian unstable/main i386 libmagic1t64 i386 1:5.45-3 [114 kB] Get: 29 http://deb.debian.org/debian unstable/main i386 file i386 1:5.45-3 [42.9 kB] Get: 30 http://deb.debian.org/debian unstable/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 31 http://deb.debian.org/debian unstable/main i386 libuchardet0 i386 0.0.8-1+b1 [69.1 kB] Get: 32 http://deb.debian.org/debian unstable/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 33 http://deb.debian.org/debian unstable/main i386 bsdextrautils i386 2.40.2-9 [102 kB] Get: 34 http://deb.debian.org/debian unstable/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 35 http://deb.debian.org/debian unstable/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 36 http://deb.debian.org/debian unstable/main i386 m4 i386 1.4.19-4 [293 kB] Get: 37 http://deb.debian.org/debian unstable/main i386 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian unstable/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian unstable/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian unstable/main i386 autopoint all 0.22.5-2 [723 kB] Get: 41 http://deb.debian.org/debian unstable/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main i386 libtool all 2.4.7-7 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main i386 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main i386 libelf1t64 i386 0.191-2 [194 kB] Get: 48 http://deb.debian.org/debian unstable/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main i386 libicu72 i386 72.1-5 [9550 kB] Get: 50 http://deb.debian.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.1 [733 kB] Get: 51 http://deb.debian.org/debian unstable/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 52 http://deb.debian.org/debian unstable/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main i386 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main i386 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian unstable/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main i386 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main i386 python3-zipp all 3.20.2-1 [10.3 kB] Get: 64 http://deb.debian.org/debian unstable/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 65 http://deb.debian.org/debian unstable/main i386 dh-python all 6.20240824 [109 kB] Get: 66 http://deb.debian.org/debian unstable/main i386 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 67 http://deb.debian.org/debian unstable/main i386 libbrotli1 i386 1.1.0-2+b4 [309 kB] Get: 68 http://deb.debian.org/debian unstable/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 69 http://deb.debian.org/debian unstable/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 70 http://deb.debian.org/debian unstable/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3 [200 kB] Get: 71 http://deb.debian.org/debian unstable/main i386 libnghttp2-14 i386 1.63.0-1 [82.7 kB] Get: 72 http://deb.debian.org/debian unstable/main i386 libpsl5t64 i386 0.21.2-1.1 [57.4 kB] Get: 73 http://deb.debian.org/debian unstable/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b4 [62.0 kB] Get: 74 http://deb.debian.org/debian unstable/main i386 libssh2-1t64 i386 1.11.0-7 [226 kB] Get: 75 http://deb.debian.org/debian unstable/main i386 libcurl4t64 i386 8.10.1-2 [391 kB] Get: 76 http://deb.debian.org/debian unstable/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 77 http://deb.debian.org/debian unstable/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 78 http://deb.debian.org/debian unstable/main i386 libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 79 http://deb.debian.org/debian unstable/main i386 libprotobuf32t64 i386 3.21.12-10 [1066 kB] Get: 80 http://deb.debian.org/debian unstable/main i386 libyaml-0-2 i386 0.2.5-1+b1 [55.2 kB] Get: 81 http://deb.debian.org/debian unstable/main i386 python3-all i386 3.12.6-1 [1040 B] Get: 82 http://deb.debian.org/debian unstable/main i386 python3-async-timeout all 4.0.3-1 [7660 B] Get: 83 http://deb.debian.org/debian unstable/main i386 python3-bcrypt i386 4.2.0-2 [222 kB] Get: 84 http://deb.debian.org/debian unstable/main i386 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 85 http://deb.debian.org/debian unstable/main i386 python3-urllib3 all 2.0.7-2 [111 kB] Get: 86 http://deb.debian.org/debian unstable/main i386 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 87 http://deb.debian.org/debian unstable/main i386 python3-charset-normalizer i386 3.3.2-4 [118 kB] Get: 88 http://deb.debian.org/debian unstable/main i386 python3-idna all 3.8-2 [41.6 kB] Get: 89 http://deb.debian.org/debian unstable/main i386 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 90 http://deb.debian.org/debian unstable/main i386 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 91 http://deb.debian.org/debian unstable/main i386 python3-biomaj3-core all 3.0.28-2 [25.0 kB] Get: 92 http://deb.debian.org/debian unstable/main i386 python3-biomaj3-cli all 3.1.11-5 [18.9 kB] Get: 93 http://deb.debian.org/debian unstable/main i386 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 94 http://deb.debian.org/debian unstable/main i386 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 95 http://deb.debian.org/debian unstable/main i386 python3-consul all 1.5.1+dfsg-1 [22.7 kB] Get: 96 http://deb.debian.org/debian unstable/main i386 python3-blinker all 1.8.2-1 [13.1 kB] Get: 97 http://deb.debian.org/debian unstable/main i386 python3-colorama all 0.4.6-4 [36.2 kB] Get: 98 http://deb.debian.org/debian unstable/main i386 python3-click all 8.1.7-2 [94.3 kB] Get: 99 http://deb.debian.org/debian unstable/main i386 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 100 http://deb.debian.org/debian unstable/main i386 python3-markupsafe i386 2.1.5-1+b1 [13.7 kB] Get: 101 http://deb.debian.org/debian unstable/main i386 python3-jinja2 all 3.1.3-1 [119 kB] Get: 102 http://deb.debian.org/debian unstable/main i386 python3-werkzeug all 3.0.4-1 [207 kB] Get: 103 http://deb.debian.org/debian unstable/main i386 python3-flask all 3.0.3-1 [104 kB] Get: 104 http://deb.debian.org/debian unstable/main i386 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 105 http://deb.debian.org/debian unstable/main i386 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 106 http://deb.debian.org/debian unstable/main i386 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 107 http://deb.debian.org/debian unstable/main i386 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 108 http://deb.debian.org/debian unstable/main i386 python3-prettytable all 3.10.1-1 [37.1 kB] Get: 109 http://deb.debian.org/debian unstable/main i386 python3-six all 1.16.0-7 [16.4 kB] Get: 110 http://deb.debian.org/debian unstable/main i386 python3-irodsclient all 2.1.0-1 [204 kB] Get: 111 http://deb.debian.org/debian unstable/main i386 python3-pika all 1.3.2-1 [125 kB] Get: 112 http://deb.debian.org/debian unstable/main i386 python3-decorator all 5.1.1-5 [15.1 kB] Get: 113 http://deb.debian.org/debian unstable/main i386 python3-prometheus-client all 0.19.0+ds1-1 [35.0 kB] Get: 114 http://deb.debian.org/debian unstable/main i386 python3-protobuf i386 3.21.12-10 [255 kB] Get: 115 http://deb.debian.org/debian unstable/main i386 python3-pycurl i386 7.45.3-2+b1 [73.4 kB] Get: 116 http://deb.debian.org/debian unstable/main i386 python3-wrapt i386 1.15.0-3 [43.9 kB] Get: 117 http://deb.debian.org/debian unstable/main i386 python3-deprecated all 1.2.14-1 [14.3 kB] Get: 118 http://deb.debian.org/debian unstable/main i386 python3-packaging all 24.1-1 [45.8 kB] Get: 119 http://deb.debian.org/debian unstable/main i386 python3-redis all 4.3.4-3 [188 kB] Get: 120 http://deb.debian.org/debian unstable/main i386 python3-simpleeval all 1.0.0-1 [24.0 kB] Get: 121 http://deb.debian.org/debian unstable/main i386 python3-tenacity all 8.4.2+really8.4.1-1 [46.0 kB] Get: 122 http://deb.debian.org/debian unstable/main i386 python3-yaml i386 6.0.2-1 [134 kB] Get: 123 http://deb.debian.org/debian unstable/main i386 python3-biomaj3-download all 3.2.12-1 [49.4 kB] Get: 124 http://deb.debian.org/debian unstable/main i386 python3-biomaj3-process all 3.0.19-1 [26.2 kB] Get: 125 http://deb.debian.org/debian unstable/main i386 python3-pyasn1 all 0.6.0-1 [70.0 kB] Get: 126 http://deb.debian.org/debian unstable/main i386 python3-ldap3 all 2.9.1-2 [235 kB] Get: 127 http://deb.debian.org/debian unstable/main i386 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 128 http://deb.debian.org/debian unstable/main i386 python3-biomaj3-user all 3.0.12-2 [19.7 kB] Get: 129 http://deb.debian.org/debian unstable/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 130 http://deb.debian.org/debian unstable/main i386 python3-msgpack i386 1.0.3-3+b2 [83.1 kB] Get: 131 http://deb.debian.org/debian unstable/main i386 python3-tz all 2024.1-2 [30.9 kB] Get: 132 http://deb.debian.org/debian unstable/main i386 python3-influxdb all 5.3.2-3 [53.5 kB] Get: 133 http://deb.debian.org/debian unstable/main i386 python3-bson all 4.10.1-2 [87.0 kB] Get: 134 http://deb.debian.org/debian unstable/main i386 python3-pymongo all 4.10.1-2 [265 kB] Get: 135 http://deb.debian.org/debian unstable/main i386 python3-yapsy all 1.12.2-2 [30.4 kB] Get: 136 http://deb.debian.org/debian unstable/main i386 unzip i386 6.0-28 [166 kB] Get: 137 http://deb.debian.org/debian unstable/main i386 python3-biomaj3 all 3.1.24-1 [65.0 kB] Get: 138 http://deb.debian.org/debian unstable/main i386 sphinx-rtd-theme-common all 2.0.0+dfsg-2 [1021 kB] Get: 139 http://deb.debian.org/debian unstable/main i386 python3-flask-cors all 5.0.0-1 [46.3 kB] Get: 140 http://deb.debian.org/debian unstable/main i386 python3-biomaj3-daemon all 3.0.24-3 [30.7 kB] Fetched 41.9 MB in 5s (7697 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21866 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.12-minimal:i386. Preparing to unpack .../libpython3.12-minimal_3.12.7-1_i386.deb ... Unpacking libpython3.12-minimal:i386 (3.12.7-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.3-1_i386.deb ... Unpacking libexpat1:i386 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_i386.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:i386 (3.12.7-1) ... Setting up libexpat1:i386 (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 22212 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:i386. Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ... Unpacking libkrb5support0:i386 (1.21.3-3) ... Selecting previously unselected package libcom-err2:i386. Preparing to unpack .../05-libcom-err2_1.47.1-1_i386.deb ... Unpacking libcom-err2:i386 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:i386. Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ... Unpacking libk5crypto3:i386 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:i386. Preparing to unpack .../07-libkeyutils1_1.6.3-3_i386.deb ... Unpacking libkeyutils1:i386 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:i386. Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ... Unpacking libkrb5-3:i386 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:i386. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ... Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_i386.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ... Unpacking libpython3-stdlib:i386 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23272 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_i386.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.3.2-1_i386.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3_i386.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3_i386.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.22.5-2_i386.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../008-libuchardet0_0.0.8-1+b1_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-5_i386.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.2-9_i386.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../011-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-4_i386.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../024-libelf1t64_0.191-2_i386.deb ... Unpacking libelf1t64:i386 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../026-libicu72_72.1-5_i386.deb ... Unpacking libicu72:i386 (72.1-5) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../027-libxml2_2.12.7+dfsg+really2.9.14-0.1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_i386.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../032-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../033-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../034-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../035-python3-typeguard_4.3.0-1_all.deb ... Unpacking python3-typeguard (4.3.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../036-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../037-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../038-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:i386 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-3) ... Setting up libreadline8t64:i386 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libcurl4t64:i386 (8.10.1-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:i386 (1.3.0-3+b2) ... 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Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pyasn1 (0.6.0-1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-msgpack (1.0.3-3+b2) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-10) ... Setting up python3-pymongo (4.10.1-2) ... Setting up python3-prettytable (3.10.1-1) ... Setting up python3-deprecated (1.2.14-1) ... Setting up python3-yapsy (1.12.2-2) ... /usr/lib/python3/dist-packages/yapsy/__init__.py:73: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:76: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W", re.U) /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:78: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") Setting up python3-blinker (1.8.2-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.3.2-4) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-1) ... Setting up python3-bcrypt (4.2.0-2) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-yaml (6.0.2-1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.19.0+ds1-1) ... Setting up python3-redis (4.3.4-3) ... Setting up python3-irodsclient (2.1.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]' new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z''' /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]' new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$') /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s' NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:854: SyntaxWarning: invalid escape sequence '\S' find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:855: SyntaxWarning: invalid escape sequence '\S' re.finditer(u'target_host = (\S+)', search_text) ) /usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '.*\[Hello world!\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]') Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-flask-cors (5.0.0-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-consul (1.5.1+dfsg-1) ... Setting up dh-python (6.20240824) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-influxdb (5.3.2-3) ... Setting up python3-biomaj3-core (3.0.28-2) ... Setting up python3-biomaj3-cli (3.1.11-5) ... Setting up python3-biomaj3-download (3.2.12-1) ... Setting up python3-biomaj3-user (3.0.12-2) ... Setting up python3-biomaj3-process (3.0.19-1) ... Setting up python3-biomaj3 (3.1.24-1) ... Setting up python3-biomaj3-daemon (3.0.24-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-cli-3.1.11/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-cli_3.1.11-5_source.changes dpkg-buildpackage: info: source package biomaj3-cli dpkg-buildpackage: info: source version 3.1.11-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli copying biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli running egg_info creating biomaj_cli.egg-info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts creating build creating build/scripts-3.12 copying and adjusting bin/biomaj-cli.py -> build/scripts-3.12 changing mode of build/scripts-3.12/biomaj-cli.py from 644 to 755 create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-cli/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_cli.egg-info/PKG-INFO writing dependency_links to biomaj_cli.egg-info/dependency_links.txt writing requirements to biomaj_cli.egg-info/requires.txt writing top-level names to biomaj_cli.egg-info/top_level.txt reading manifest file 'biomaj_cli.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'biomaj_cli.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12 creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/utils.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli copying /build/reproducible-path/biomaj3-cli-3.1.11/.pybuild/cpython3_3.12_biomaj-cli/build/biomaj_cli/__init__.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli/__init__.py to __init__.cpython-312.pyc running install_egg_info Copying biomaj_cli.egg-info to /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/lib/python3.12/dist-packages/biomaj_cli-3.1.11.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin copying build/scripts-3.12/biomaj-cli.py -> /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin changing mode of /build/reproducible-path/biomaj3-cli-3.1.11/debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-cli/usr/bin/biomaj-cli.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-cli-3.1.11' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-cli: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-cli: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-cli' in '../python3-biomaj3-cli_3.1.11-5_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-cli_3.1.11-5_i386.buildinfo dpkg-genchanges --build=binary -O../biomaj3-cli_3.1.11-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26169 and its subdirectories I: Current time: Mon Oct 14 17:43:46 -12 2024 I: pbuilder-time-stamp: 1728971026 Tue Oct 15 05:43:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom08-i386.debian.net. Tue Oct 15 05:43:48 UTC 2024 I: Preparing to do remote build '2' on infom08-i386.debian.net. Tue Oct 15 05:44:35 UTC 2024 I: Deleting $TMPDIR on infom08-i386.debian.net. Tue Oct 15 05:44:36 UTC 2024 I: biomaj3-cli_3.1.11-5_i386.changes: Format: 1.8 Date: Sun, 07 Jul 2024 00:10:08 +0200 Source: biomaj3-cli Binary: python3-biomaj3-cli Architecture: all Version: 3.1.11-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-biomaj3-cli - BioMAJ client Changes: biomaj3-cli (3.1.11-5) unstable; urgency=medium . * Team Upload. * remove extraneous & deprecated build-dep on python3-mock Checksums-Sha1: 3e94106620d82fe2b777f565ea89cb88f24b87d0 8402 biomaj3-cli_3.1.11-5_i386.buildinfo 0924fd73d1f12fdd4847cc89584477ed4de25e8a 18904 python3-biomaj3-cli_3.1.11-5_all.deb Checksums-Sha256: f8149798a8ce81f3a1e6c275fe4b5797239a813c6909a1c22a8dd87dd86b21bc 8402 biomaj3-cli_3.1.11-5_i386.buildinfo 27a4cec117151ba7160f0a34c723ef4a5e0c5c40db3f1cfda796841a47c00fb8 18904 python3-biomaj3-cli_3.1.11-5_all.deb Files: 7a0489b752dc7508ab6e660db69e001e 8402 python optional biomaj3-cli_3.1.11-5_i386.buildinfo 4a9550e07546a509d815a9a6bc275bdc 18904 python optional python3-biomaj3-cli_3.1.11-5_all.deb Tue Oct 15 05:44:37 UTC 2024 I: diffoscope 280 will be used to compare the two builds: Running as unit: rb-diffoscope-i386_13-45276.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.PRdsWwz4/biomaj3-cli_3.1.11-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.PRdsWwz4/biomaj3-cli_3.1.11-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.PRdsWwz4/biomaj3-cli_3.1.11-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.PRdsWwz4/b1/biomaj3-cli_3.1.11-5_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.PRdsWwz4/b2/biomaj3-cli_3.1.11-5_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.394s) 0.394s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 746ms CPU time consumed: 746ms Tue Oct 15 05:44:39 UTC 2024 I: diffoscope 280 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 15 05:44:39 UTC 2024 I: biomaj3-cli from unstable built successfully and reproducibly on i386. Tue Oct 15 05:44:40 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Oct 15 05:44:40 UTC 2024 I: Submitting 12K b1/biomaj3-cli_3.1.11-5_i386.buildinfo.asc Tue Oct 15 05:44:41 UTC 2024 I: Submitting 12K b2/biomaj3-cli_3.1.11-5_i386.buildinfo.asc Tue Oct 15 05:44:42 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 15 05:44:42 UTC 2024 I: Done submitting .buildinfo files. Tue Oct 15 05:44:42 UTC 2024 I: Removing signed biomaj3-cli_3.1.11-5_i386.buildinfo.asc files: removed './b1/biomaj3-cli_3.1.11-5_i386.buildinfo.asc' removed './b2/biomaj3-cli_3.1.11-5_i386.buildinfo.asc'