Sun Jul 28 09:06:24 UTC 2024 I: starting to build spoa/unstable/armhf on jenkins on '2024-07-28 09:05' Sun Jul 28 09:06:24 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_27/8498/console.log Sun Jul 28 09:06:24 UTC 2024 I: Downloading source for unstable/spoa=4.1.4-2 --2024-07-28 09:06:25-- http://deb.debian.org/debian/pool/main/s/spoa/spoa_4.1.4-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2306 (2.3K) [text/prs.lines.tag] Saving to: ‘spoa_4.1.4-2.dsc’ 0K .. 100% 199M=0s 2024-07-28 09:06:25 (199 MB/s) - ‘spoa_4.1.4-2.dsc’ saved [2306/2306] Sun Jul 28 09:06:25 UTC 2024 I: spoa_4.1.4-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spoa Binary: spoa, libspoa7.0.0, libspoa-dev Architecture: any Version: 4.1.4-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/rvaser/spoa Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/spoa Vcs-Git: https://salsa.debian.org/med-team/spoa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev [any-amd64 any-i386] Package-List: libspoa-dev deb libdevel optional arch=any libspoa7.0.0 deb libs optional arch=any spoa deb science optional arch=any Checksums-Sha1: 4238e0d435b3e0df7d0b377d07f71fe463b9f836 47516 spoa_4.1.4.orig.tar.gz b6b267b927d061faad721546907cfc2fe5f8de17 8916 spoa_4.1.4-2.debian.tar.xz Checksums-Sha256: ea696650460b17881595454c2546a05905f2724927dbbf4d71f4bb8a3f6a99cd 47516 spoa_4.1.4.orig.tar.gz 4829ccc110a3b45b65ec89bf781d0b872a3b3e7d05dd0ea6f83138ea9c8b96fe 8916 spoa_4.1.4-2.debian.tar.xz Files: b8eb09427cc97cdf94602ad71828adbf 47516 spoa_4.1.4.orig.tar.gz 4b1c264b2541ae76ad230cedf82d1dbc 8916 spoa_4.1.4-2.debian.tar.xz Dgit: 42af53d79785430a8d68c815f2e48d8786ebc476 debian archive/debian/4.1.4-2 https://git.dgit.debian.org/spoa -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmahXg8UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpt0BAAqboi+lvHXH3U2zN6ek60fTDEorTx anmKlDgzk57ZTv+7woccGHJ+43o5q27k7AYLjKiAESK4wWIt3p8z0Vc/B2sKeN/A qKyIyZ8fkfH9CZVQzzZH7BFqRl4SYTBiaoXcatvUYKiu6/nE62NE+EvR2pJUP7I2 UsjVW7I1sJyrZgnYrA30KjMo6y4W70l+CP4oVRJwd2D7HCyNXCXG8o4nl6592rxl dtEpLPhQXzL2MzlrLyefGCEGsASQ513JO5B0yBODmY/ZGrkw0iFwx274fi2Qw8Hp GMOp037AbyCA7KB9vT+OSCNXH5wimvluTKQdRiOne5A3+/urczhbRJ/nJa/TXb5d kCAdV1+j7a+wYBU4PNMpAWy27WCicSUsYjJAqivdFhf963zBnGpnGhbhTKyZI9ri ju59ifnOyXHLobgIXEKQxGMIbKsdYiaKzz/YBKtT2NWWUJGdPRawMW2hBkhy1hNQ w/vkR8jizsrgYsq1G4/uWaQj6deRPVuBOOuY6VSyiWJ8ESfn9TRnZLN7JeLEfKSR LliGsaaSQcdpcYTihEMc8LXq2VUFwOlcR7YKdyZOE6ZMSGRAeACDG79Gdgq/+b7m osLwVT8a/9eIPp+p/8gaGBwAsji09K9A2NQFL9SnX9EliVcuSsB5gFo8K/n9aAmZ /EIBm5jgzqRoVF0= =w30O -----END PGP SIGNATURE----- Sun Jul 28 09:06:25 UTC 2024 I: Checking whether the package is not for us Sun Jul 28 09:06:25 UTC 2024 I: Starting 1st build on remote node virt64z-armhf-rb.debian.net. Sun Jul 28 09:06:25 UTC 2024 I: Preparing to do remote build '1' on virt64z-armhf-rb.debian.net. Sun Jul 28 09:09:07 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 27 21:06:31 -12 2024 I: pbuilder-time-stamp: 1722157591 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [spoa_4.1.4-2.dsc] I: copying [./spoa_4.1.4.orig.tar.gz] I: copying [./spoa_4.1.4-2.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Jul 24 20:03:27 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-2.dsc: no acceptable signature found dpkg-source: info: extracting spoa in spoa-4.1.4 dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz dpkg-source: info: unpacking spoa_4.1.4-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-ftbfs-gcc-10.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24424/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='16f0983b742c47d0bf7b68d6bbf3ea4f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24424' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1KMo5FwZ/pbuilderrc_2iAW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1KMo5FwZ/b1 --logfile b1/build.log spoa_4.1.4-2.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-23-arm64 #1 SMP Debian 6.1.99-1 (2024-07-15) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/24424/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libssl3 linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 32.4 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-5 [55.8 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-5 [863 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-1 [87.8 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg-3+b1 [583 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.2-2.1 [304 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-2 [162 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.62.1-2 [63.7 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-6 [199 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.9.0-2 [414 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-5 [134 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.30.1-1 [2268 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.30.1-1 [5292 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf d-shlibs all 0.106 [10.9 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf debhelper all 13.16 [891 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf googletest all 1.15.0-1 [514 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libbiosoup-dev all 0.11.0-2 [8000 B] Get: 57 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libbioparser-dev all 3.1.0-1 [9108 B] Get: 59 http://deb.debian.org/debian unstable/main armhf rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libcereal-dev armhf 1.3.2+dfsg-5 [221 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libgtest-dev armhf 1.15.0-1 [245 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libsimde-dev all 0.8.2-1 [465 kB] Fetched 32.4 MB in 0s (81.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-5_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-5) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-5_armhf.deb ... Unpacking procps (2:4.0.4-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-1_armhf.deb ... Unpacking bsdextrautils (2.40.2-1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.12.1-2_armhf.deb ... Unpacking man-db (2.12.1-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../17-libicu72_72.1-5_armhf.deb ... Unpacking libicu72:armhf (72.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../18-libxml2_2.12.7+dfsg-3+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg-3+b1) ... Selecting previously unselected package libarchive13t64:armhf. Preparing to unpack .../19-libarchive13t64_3.7.2-2.1_armhf.deb ... Unpacking libarchive13t64:armhf (3.7.2-2.1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../20-libbrotli1_1.1.0-2+b4_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b4) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../21-libkrb5support0_1.21.3-3_armhf.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.1.4-2_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.1.4-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures .. -- The CXX compiler identification is GNU 14.1.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/share/cmake-3.30/Modules/FetchContent.cmake:1953 (message): Calling FetchContent_Populate(simde) is deprecated, call FetchContent_MakeAvailable(simde) instead. Policy CMP0169 can be set to OLD to allow FetchContent_Populate(simde) to be called directly for now, but the ability to call it with declared details will be removed completely in a future version. Call Stack (most recent call first): CMakeLists.txt:53 (FetchContent_Populate) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning at /usr/share/cmake-3.30/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency simde to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.30/Modules/FetchContent.cmake:1978:EVAL:1 (__FetchContent_Populate) /usr/share/cmake-3.30/Modules/FetchContent.cmake:1978 (cmake_language) CMakeLists.txt:53 (FetchContent_Populate) -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY spoa_build_executable -- Build files have been written to: /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_auto_build -O--no-parallel cd obj-arm-linux-gnueabihf && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f 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CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp [ 28%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 35%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/version.cpp [ 42%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 42%] Built target spoa make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 57%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 71%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 71%] Built target spoa_static make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 78%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/main.cpp [ 85%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/lib: lib/libspoa.so.7.0.0 -lz make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 85%] Built target spoa_exe make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' cd /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [ 92%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/reproducible-path/spoa-4.1.4/test/spoa_test.cpp [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/lib lib/libspoa.so.7.0.0 -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' [100%] Built target spoa_test make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' `find . -name spoa_test` Running main() from ./googletest/src/gtest_main.cc [==========] Running 22 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (1874 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (938 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (1280 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (2207 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (932 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (1288 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (2200 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (876 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (1208 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (2143 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (879 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (1213 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (2132 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (868 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (1200 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (2126 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (872 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (1199 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (2124 ms) [----------] 19 tests from SpoaTest (27573 ms total) [----------] Global test environment tear-down [==========] 22 tests from 2 test suites ran. (27574 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel cd obj-arm-linux-gnueabihf && make -j1 install DESTDIR=/build/reproducible-path/spoa-4.1.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa_static.a -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa -- Set non-toolchain portion of runtime path of "/build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/arm-linux-gnueabihf/cmake /usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so debian/libspoa-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev//usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libspoa-dev//usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'spoa' in '../spoa_4.1.4-2_armhf.deb'. dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-2_armhf.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-2_armhf.deb'. dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-2_armhf.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-2_armhf.buildinfo dpkg-genchanges --build=binary -O../spoa_4.1.4-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24424 and its subdirectories I: Current time: Sat Jul 27 21:08:56 -12 2024 I: pbuilder-time-stamp: 1722157736 Sun Jul 28 09:09:09 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32a-armhf-rb.debian.net. Sun Jul 28 09:09:09 UTC 2024 I: Preparing to do remote build '2' on virt32a-armhf-rb.debian.net. Sun Jul 28 09:12:51 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. Sun Jul 28 09:12:53 UTC 2024 I: spoa_4.1.4-2_armhf.changes: Format: 1.8 Date: Wed, 24 Jul 2024 21:59:08 +0200 Source: spoa Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym Architecture: armhf Version: 4.1.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libspoa-dev - SIMD partial order alignment library (development files) libspoa7.0.0 - SIMD partial order alignment library spoa - SIMD partial order alignment tool Closes: 1075532 Changes: spoa (4.1.4-2) unstable; urgency=medium . * d/libspoa7.0.0.symbols.amd64: mark some compiler symbols as optional. (Closes: #1075532) * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: a97198a650567c2e6a7eb5d07f5490026413cf07 9520 libspoa-dev_4.1.4-2_armhf.deb 6cc6ddd22c215e9251445f8c7b35ebd7f8da1891 676596 libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb 14cb6f550334122efa7fc1a75a5eafd303cc782b 61616 libspoa7.0.0_4.1.4-2_armhf.deb 0f27389aaf8550ff6188c4aeaf8b9c82985d0085 240452 spoa-dbgsym_4.1.4-2_armhf.deb 8c0df95b3a37e166cca1a8e5a2ebd0f7b96cd01d 7118 spoa_4.1.4-2_armhf.buildinfo 55347bdbc60d5200db2723f678c4d2aaeea8a9a1 34736 spoa_4.1.4-2_armhf.deb Checksums-Sha256: fee1587fd44f4a90a2eafea33fc4f0a2782fb14e387ebdb621e05eb47449fd8c 9520 libspoa-dev_4.1.4-2_armhf.deb 9a82edbd0ee716cd92da2933acaea32748c0ca48830b44c63b2888da0761e8f6 676596 libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb 92c31de0f62cf4e92d91347b3a4a1a6154474fc30fe6c2e4aee95dd7ec74244b 61616 libspoa7.0.0_4.1.4-2_armhf.deb 8e996248384a01a5e0140ba2fd45298ae1a5c8cf5658fc6ece3c50edd35d1947 240452 spoa-dbgsym_4.1.4-2_armhf.deb f6f736b4a031e64f477c7270a09ca587268460ce4a067fa21e2023bff81fc5c3 7118 spoa_4.1.4-2_armhf.buildinfo a896e794a3b8651cf8532f43be90a27f6146dc912b54ddcbb78cf0a5506f3a3e 34736 spoa_4.1.4-2_armhf.deb Files: 0649cdc9b0aa5a1edf620ffe481aed6e 9520 libdevel optional libspoa-dev_4.1.4-2_armhf.deb 29afcc40ee76b48b94e60caa67dd71a7 676596 debug optional libspoa7.0.0-dbgsym_4.1.4-2_armhf.deb d0688fbf774fc94201f332406078aa8b 61616 libs optional libspoa7.0.0_4.1.4-2_armhf.deb 9e4007fa1959b5443c24881cbd8122af 240452 debug optional spoa-dbgsym_4.1.4-2_armhf.deb 82174fba4d73a1c38294c507ff91e6af 7118 science optional spoa_4.1.4-2_armhf.buildinfo da360c1dac4a209cf2a44b10c8d53a87 34736 science optional spoa_4.1.4-2_armhf.deb Sun Jul 28 09:12:55 UTC 2024 I: diffoscope 272 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_27-8498.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1KMo5FwZ/spoa_4.1.4-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1KMo5FwZ/spoa_4.1.4-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1KMo5FwZ/spoa_4.1.4-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1KMo5FwZ/b1/spoa_4.1.4-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.1KMo5FwZ/b2/spoa_4.1.4-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.394s) 0.394s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.031s) 0.031s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 740ms CPU time consumed: 741ms Sun Jul 28 09:12:56 UTC 2024 I: diffoscope 272 found no differences in the changes files, and a .buildinfo file also exists. Sun Jul 28 09:12:56 UTC 2024 I: spoa from unstable built successfully and reproducibly on armhf. Sun Jul 28 09:12:57 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Jul 28 09:12:57 UTC 2024 I: Submitting 8.0K b1/spoa_4.1.4-2_armhf.buildinfo.asc Sun Jul 28 09:12:58 UTC 2024 I: Submitting 8.0K b2/spoa_4.1.4-2_armhf.buildinfo.asc Sun Jul 28 09:12:59 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jul 28 09:12:59 UTC 2024 I: Done submitting .buildinfo files. Sun Jul 28 09:12:59 UTC 2024 I: Removing signed spoa_4.1.4-2_armhf.buildinfo.asc files: removed './b1/spoa_4.1.4-2_armhf.buildinfo.asc' removed './b2/spoa_4.1.4-2_armhf.buildinfo.asc'