Thu Jan 25 05:11:33 UTC 2024 I: starting to build ska/unstable/armhf on jenkins on '2024-01-25 05:11' Thu Jan 25 05:11:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_29/152/console.log Thu Jan 25 05:11:33 UTC 2024 I: Downloading source for unstable/ska=1.0+dfsg-4 --2024-01-25 05:11:33-- http://deb.debian.org/debian/pool/main/s/ska/ska_1.0%2bdfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2032 (2.0K) [text/prs.lines.tag] Saving to: ‘ska_1.0+dfsg-4.dsc’ 0K . 100% 316M=0s 2024-01-25 05:11:33 (316 MB/s) - ‘ska_1.0+dfsg-4.dsc’ saved [2032/2032] Thu Jan 25 05:11:33 UTC 2024 I: ska_1.0+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ska Binary: ska Architecture: any Version: 1.0+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/simonrharris/SKA Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/ska Vcs-Git: https://salsa.debian.org/med-team/ska.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, googletest, libgtest-dev, zlib1g-dev Build-Depends: debhelper-compat (= 13), zlib1g-dev, googletest Package-List: ska deb science optional arch=any Checksums-Sha1: d5e6350fdb1968c91800d6b704495d54ecc0bfc4 85612 ska_1.0+dfsg.orig.tar.xz 66be56949bce8713fbc8ed0a91221394926a3345 4840 ska_1.0+dfsg-4.debian.tar.xz Checksums-Sha256: 1a4aaa448c44b93010ee7dbacd4ff44dcd0876d6f4d9ed20a5ac5bf837e2ab42 85612 ska_1.0+dfsg.orig.tar.xz c5142057c90e05a4a0b48d6eb5d97718c2bd00f132808f2a2c8fed226aacc953 4840 ska_1.0+dfsg-4.debian.tar.xz Files: 6fc4064b3eef8153bee41ead25059339 85612 ska_1.0+dfsg.orig.tar.xz aae9c148071cc82a37f0885618773d2a 4840 ska_1.0+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWuVGsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF2PQ//f33+kagu3Oysw5VV+y8hYnGpanTM10kX fgnT5x1POQg8AcAZgSp2F4JsbscNkH70mris1LbFsuSh3heh7uFvVczTo4a229ls MKS954ZOYA2jh2hqnCtjWY68AmhLn+eJmK/i12XDgS6VHmQ/VeDHU2F26iWmWpUx kwMbZiUBjcbd0Zov+uksiRPKCrqvWq8z3nnZqD61vRjsV69rttNyjrym2siBD268 RZKR/Tefsbg73JCsd0zmCS27wFkaD+mfQLVUhLQsI2nKMKxZk0CNyeXIHZyiRDkF ptbFKqPChvqdz71iePNFbCbxmAff6yVEVa40YbDUUIKyZoVJVFbZIMZ/VJ95mZ69 mFd9YCfCEH/CFs2iPURhxmRtENi2U9a66BNNcPApJVMJsNeKg/8ZHFmSAO8Z5El/ LgzEALWP6EBjYzdXZDD/2G5AGjh99y90gLmYHuXacf3oEIlJZba+Tg3adzNkRJZ0 OmmNtMU1rJBllue5MOmyPfxMCDcq0BoLLh4DRsRxDGb9vtg4/ZFZCqC0xrVMq7h4 VnzvWbXrErQg2x3D2ZUY3C4UztIK/1uPaqomFxa93+Q4jjF45tIqLE24pGdfIWSm IrtJp2Q1lzJGB2HA5cSyJpxjISVbV44NL3893TzFLyIz2WbQEiPhEqr2pRGO6YDu uA4osFTeVRM= =rUUd -----END PGP SIGNATURE----- Thu Jan 25 05:11:33 UTC 2024 I: Checking whether the package is not for us Thu Jan 25 05:11:33 UTC 2024 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Thu Jan 25 05:11:33 UTC 2024 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Thu Jan 25 05:15:14 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 24 17:11:44 -12 2024 I: pbuilder-time-stamp: 1706159504 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ska_1.0+dfsg-4.dsc] I: copying [./ska_1.0+dfsg.orig.tar.xz] I: copying [./ska_1.0+dfsg-4.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Jan 22 11:41:31 2024 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ska_1.0+dfsg-4.dsc: no acceptable signature found dpkg-source: info: extracting ska in ska-1.0+dfsg dpkg-source: info: unpacking ska_1.0+dfsg.orig.tar.xz dpkg-source: info: unpacking ska_1.0+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying include_vector.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6920/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8d75f3ba0cb64b188065e4966baf1056' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='6920' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0pg7Kcdy/pbuilderrc_sCw2 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0pg7Kcdy/b1 --logfile b1/build.log ska_1.0+dfsg-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32a 6.1.0-17-armmp-lpae #1 SMP Debian 6.1.69-1 (2023-12-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jan 22 07:44 /bin -> usr/bin I: user script /srv/workspace/pbuilder/6920/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, googletest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on googletest; however: Package googletest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After unpacking 73.2 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.20 [19.3 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-2+b1 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libmagic1 armhf 1:5.45-2+b1 [97.9 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-2+b1 [42.2 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14 [157 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1 [65.4 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3 [1088 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.39.3-6 [81.2 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-1+b2 [33.4 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.0-3 [1367 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.11.10 [82.9 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 23 http://deb.debian.org/debian unstable/main armhf libelf1 armhf 0.190-1+b1 [171 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1 [101 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4 [9057 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14 [1229 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf debhelper all 13.11.10 [882 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf googletest all 1.14.0-1 [512 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3+b1 [904 kB] Fetched 19.7 MB in 0s (42.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19616 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.20_all.deb ... Unpacking sensible-utils (0.0.20) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-2+b1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../02-libmagic1_1%3a5.45-2+b1_armhf.deb ... Unpacking libmagic1:armhf (1:5.45-2+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-2+b1_armhf.deb ... Unpacking file (1:5.45-2+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.21-14_armhf.deb ... Unpacking gettext-base (0.21-14) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../05-libuchardet0_0.0.8-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-3_armhf.deb ... Unpacking groff-base (1.23.0-3) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.39.3-6_armhf.deb ... Unpacking bsdextrautils (2.39.3-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../08-libpipeline1_1.5.7-1+b2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-1+b2) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.12.0-3_armhf.deb ... Unpacking man-db (2.12.0-3) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.21-14_all.deb ... Unpacking autopoint (0.21-14) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.11.10_all.deb ... Unpacking libdebhelper-perl (13.11.10) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../19-libsub-override-perl_0.10-1_all.deb ... Unpacking libsub-override-perl (0.10-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.13.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../22-libelf1_0.190-1+b1_armhf.deb ... Unpacking libelf1:armhf (0.190-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1_armhf.deb ... Unpacking dwz (0.15-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../24-libicu72_72.1-4_armhf.deb ... Unpacking libicu72:armhf (72.1-4) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../25-libxml2_2.9.14+dfsg-1.3+b2_armhf.deb ... Unpacking libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.21-14_armhf.deb ... Unpacking gettext (0.21-14) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.11.10_all.deb ... Unpacking debhelper (13.11.10) ... Selecting previously unselected package googletest. Preparing to unpack .../30-googletest_1.14.0-1_all.deb ... Unpacking googletest (1.14.0-1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../31-zlib1g-dev_1%3a1.3.dfsg-3+b1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up libpipeline1:armhf (1.5.7-1+b2) ... Setting up libicu72:armhf (72.1-4) ... Setting up bsdextrautils (2.39.3-6) ... Setting up libmagic-mgc (1:5.45-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.10) ... Setting up libmagic1:armhf (1:5.45-2+b1) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2+b1) ... Setting up googletest (1.14.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg-3+b1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:armhf (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libelf1:armhf (0.190-1+b1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-14) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.11.10) ... Processing triggers for libc-bin (2.37-14) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ska-1.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ska_1.0+dfsg-4_source.changes dpkg-buildpackage: info: source package ska dpkg-buildpackage: info: source version 1.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Komolehin Israel Timilehin dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j3 distclean make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' rm -f build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o rm -f bin/ska make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j3 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/DNA.cpp -o build/DNA.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/general.cpp -o build/general.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/kmers.cpp -o build/kmers.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_align.cpp -o build/sk_align.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_alleles.cpp -o build/sk_alleles.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_compare.cpp -o build/sk_compare.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_distance.cpp -o build/sk_distance.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fasta.cpp -o build/sk_fasta.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_fastq.cpp -o build/sk_fastq.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_find.cpp -o build/sk_find.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_humanise.cpp -o build/sk_humanise.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_info.cpp -o build/sk_info.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_merge.cpp -o build/sk_merge.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_refalign.cpp -o build/sk_refalign.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_summary.cpp -o build/sk_summary.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_type.cpp -o build/sk_type.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_unique.cpp -o build/sk_unique.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/sk_weed.cpp -o build/sk_weed.o g++ -g -std=c++0x -O2 -Isrc -Isrc -c src/ska.cpp -o build/ska.o g++ -g -std=c++0x -O2 -o bin/ska build/DNA.o build/general.o build/kmers.o build/sk_align.o build/sk_alleles.o build/sk_compare.o build/sk_distance.o build/sk_fasta.o build/sk_fastq.o build/sk_find.o build/sk_humanise.o build/sk_info.o build/sk_merge.o build/sk_refalign.o build/sk_summary.o build/sk_type.o build/sk_unique.o build/sk_weed.o build/ska.o -lz make[1]: Leaving directory '/build/reproducible-path/ska-1.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ska-1.0+dfsg' cp -a tests tests.bak cd tests && ln -s /usr/src/googletest/googletest && make && \ ./general_unittest && ./kmers_unittest && ./DNA_unittest make[2]: Entering directory '/build/reproducible-path/ska-1.0+dfsg/tests' g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -g -Wall -Wextra -pthread -c ../src//general.cpp ../src//general.cpp: In function ‘int openGzFileStream(const std::string&, igzstream&, bool)’: ../src//general.cpp:40:83: warning: unused parameter ‘verbose’ [-Wunused-parameter] 40 | int openGzFileStream(const std::string & fileName, igzstream & gzFileStream, bool verbose){ | ~~~~~^~~~~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest-all.cc g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -Igoogletest -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -g -Wall -Wextra -pthread -c \ googletest/src/gtest_main.cc ar rv gtest_main.a gtest-all.o gtest_main.o ar: creating gtest_main.a a - gtest-all.o a - gtest_main.o g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -g -Wall -Wextra -pthread -lpthread general.o general_unittest.cpp gtest_main.a -o general_unittest -lz g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -g -Wall -Wextra -pthread -c ../src//kmers.cpp ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:70:22: warning: unused variable ‘basefound’ [-Wunused-variable] 70 | bool basefound=false; | ^~~~~~~~~ ../src//kmers.cpp:75:22: warning: unused variable ‘maxbase’ [-Wunused-variable] 75 | char maxbase; | ^~~~~~~ ../src//kmers.cpp: In function ‘void addKmerToStringMap(std::unordered_map, std::__cxx11::basic_string >&, const std::string&, char, const std::vector&, const std::vector&, int, int, int)’: ../src//kmers.cpp:265:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 265 | for (int i=0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 274 | for (int i=0; i, std::array >&, const int&)’: ../src//kmers.cpp:304:15: warning: unused variable ‘filecovcutoff’ [-Wunused-variable] 304 | float filecovcutoff; | ^~~~~~~~~~~~~ ../src//kmers.cpp: In function ‘int printKmerFile(const std::unordered_map, std::array >&, std::string, int, float)’: ../src//kmers.cpp:69:22: warning: ‘base’ may be used uninitialized [-Wmaybe-uninitialized] 69 | char base; | ^~~~ g++ -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -isystem googletest/include -g -O2 -ffile-prefix-map=/build/reproducible-path/ska-1.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++14 -g -Wall -Wextra -pthread -c ../src//DNA.cpp ../src//DNA.cpp: In function ‘int circulariseSequence(std::string&, int)’: ../src//DNA.cpp:187:32: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string::size_type’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 187 | if (mySequence.length() Changed-By: Komolehin Israel Timilehin Description: ska - Split Kmer Analysis Changes: ska (1.0+dfsg-4) unstable; urgency=medium . * Team upload. * Added autopkgtest Checksums-Sha1: 89e8dab7ecf5ec8f852abc9543e0514eeba42a78 2219752 ska-dbgsym_1.0+dfsg-4_armhf.deb 61cedbee678b180ee670ce53eefc197525798e38 5051 ska_1.0+dfsg-4_armhf.buildinfo 75c7baf6b7641b8dab3b9b02db8457da5a4b783d 127852 ska_1.0+dfsg-4_armhf.deb Checksums-Sha256: 4e436881ee62452d2120098684f5650c9dca532a713b77c2376788618f4e63cd 2219752 ska-dbgsym_1.0+dfsg-4_armhf.deb cc6b870f1cb9c89fbb507a2932f5597996fb39a71b90d44e1ab5addd04947f03 5051 ska_1.0+dfsg-4_armhf.buildinfo 61b0bb5f4c69d902d09a6957a9cb959ea2e4b9b3ecbe3f6a45fedbe0f1efe079 127852 ska_1.0+dfsg-4_armhf.deb Files: d9dd36653bfe5e9389e505481b0ce497 2219752 debug optional ska-dbgsym_1.0+dfsg-4_armhf.deb df5abb8baf93b5f1d287ee39d3a47b1a 5051 science optional ska_1.0+dfsg-4_armhf.buildinfo 8e128be3b0b944fcf0c858460fa8511a 127852 science optional ska_1.0+dfsg-4_armhf.deb Thu Jan 25 05:21:25 UTC 2024 I: diffoscope 254 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.0pg7Kcdy/ska_1.0+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.0pg7Kcdy/ska_1.0+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.0pg7Kcdy/ska_1.0+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.0pg7Kcdy/b1/ska_1.0+dfsg-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.0pg7Kcdy/b2/ska_1.0+dfsg-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.301s) 0.301s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.033s) 0.033s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Jan 25 05:21:26 UTC 2024 I: diffoscope 254 found no differences in the changes files, and a .buildinfo file also exists. Thu Jan 25 05:21:26 UTC 2024 I: ska from unstable built successfully and reproducibly on armhf. Thu Jan 25 05:21:27 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Jan 25 05:21:27 UTC 2024 I: Submitting 8.0K b1/ska_1.0+dfsg-4_armhf.buildinfo.asc Thu Jan 25 05:21:28 UTC 2024 I: Submitting 8.0K b2/ska_1.0+dfsg-4_armhf.buildinfo.asc Thu Jan 25 05:21:29 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jan 25 05:21:29 UTC 2024 I: Done submitting .buildinfo files. Thu Jan 25 05:21:29 UTC 2024 I: Removing signed ska_1.0+dfsg-4_armhf.buildinfo.asc files: removed './b1/ska_1.0+dfsg-4_armhf.buildinfo.asc' removed './b2/ska_1.0+dfsg-4_armhf.buildinfo.asc'