Sun Oct 6 13:35:27 UTC 2024 I: starting to build r-bioc-scater/unstable/armhf on jenkins on '2024-10-06 13:35' Sun Oct 6 13:35:27 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_14/6910/console.log Sun Oct 6 13:35:27 UTC 2024 I: Downloading source for unstable/r-bioc-scater=1.32.1+ds-1 --2024-10-06 13:35:27-- http://deb.debian.org/debian/pool/main/r/r-bioc-scater/r-bioc-scater_1.32.1%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2610 (2.5K) [text/prs.lines.tag] Saving to: ‘r-bioc-scater_1.32.1+ds-1.dsc’ 0K .. 100% 305M=0s 2024-10-06 13:35:27 (305 MB/s) - ‘r-bioc-scater_1.32.1+ds-1.dsc’ saved [2610/2610] Sun Oct 6 13:35:27 UTC 2024 I: r-bioc-scater_1.32.1+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-scater Binary: r-bioc-scater Architecture: all Version: 1.32.1+ds-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/scater/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-scater Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-scater.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment (>= 1.26.0), r-bioc-scuttle (>= 1.14.0), r-cran-ggplot2, r-cran-matrix, r-bioc-biocgenerics (>= 0.50.0), r-bioc-s4vectors (>= 0.42.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-delayedarray (>= 0.30.1), r-bioc-matrixgenerics (>= 1.16.0), r-bioc-beachmat (>= 2.20.0), r-bioc-biocneighbors (>= 1.22.0), r-bioc-biocsingular (>= 1.20.0), r-bioc-biocparallel (>= 1.38.0), r-cran-rlang, r-cran-ggbeeswarm, r-cran-viridis, r-cran-rtsne, r-cran-rcolorbrewer, r-cran-rcppml, r-cran-uwot, r-cran-pheatmap, r-cran-ggrepel, r-cran-ggrastr Package-List: r-bioc-scater deb gnu-r optional arch=all Checksums-Sha1: bd9b6fa56cc7a3d2f68e2873186a77a4b077a602 238528 r-bioc-scater_1.32.1+ds.orig.tar.xz 9bd81ae2948f768a01176517369405e37d2b3b80 3892 r-bioc-scater_1.32.1+ds-1.debian.tar.xz Checksums-Sha256: 2a3eb2031a014fd62d977c5b78b30716ce5feccc5f731b5990fa26ebf2f1a2d1 238528 r-bioc-scater_1.32.1+ds.orig.tar.xz 2ad727446218222a60c654709ffadf9e14720be49e8212bddbe506f201b206db 3892 r-bioc-scater_1.32.1+ds-1.debian.tar.xz Files: 4df6859cdbecf8c2d16e1d978e270978 238528 r-bioc-scater_1.32.1+ds.orig.tar.xz ec031bd384f48594dbd386614735ff55 3892 r-bioc-scater_1.32.1+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbByZEACgkQPCZ2P2xn 5uLrzg//ZDjIaysIAI4FZ/go0nuccJRqVzd8vSTFwD2v7/WOaEjgVoVr9o5GAOkZ zqDRBARTnWchTZ19xeBp4Cq1hGjvIw2za10ZbOv1+kaWken1ZyEM209uqPRxi+5g SAN7ZrKzj6pyHKkUu0IslDKeAPfRUNdsdN4c54Id+HWhp36xAKCzaTuSXj/tFzUE ebpTg3XCey/7kFlSkxuFUp5nc7e+WZao6Z3djiMAiciM5pf92dl+UwZYFoFwhOVK 7mgYwTbuzisvWy5urTcn9Z3X4mOyCZKnWUfE5uJQHmji9I2+CzLcN2M0kGeQ8ap6 xkjNZtIPzWTuBg65z0pd5HMSnu7j74SxsRh3VYSvQmu/BrRczzEsTTcvYGDCohNj saAqrVUyoSzttz8uTFSJzBK2lZ2e/2289dpRao1Rrg/AjLyHYEcK4f0r+RIPjsdI 6TqR3GJO3/wrJe3odRREW7jUj/uwd4QorYIBsBwSuT3vgpZMvsQr7FaFQ8HVGjAM nXcqxT0KZdOsnmGfCLW2oUuTfbVOXB9ghY4oOCndRRZ0YfyxVsDuiwgR8Sg/0gf4 hanodYAFdv3AuL1b5/jE0Unrml3ShkVmu/KHVrcCP00I6r6LQBOdVG4P93PryeSz dnziJc5Z7yiOvdTpsKTG4nh8MnVASd4nG+v/GFr9GLYK1XJRzRY= =JflN -----END PGP SIGNATURE----- Sun Oct 6 13:35:27 UTC 2024 I: Checking whether the package is not for us Sun Oct 6 13:35:27 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Sun Oct 6 13:35:27 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Sun Oct 6 13:36:03 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 6 01:35:34 -12 2024 I: pbuilder-time-stamp: 1728221734 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-scater_1.32.1+ds-1.dsc] I: copying [./r-bioc-scater_1.32.1+ds.orig.tar.xz] I: copying [./r-bioc-scater_1.32.1+ds-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:14:41 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-scater_1.32.1+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-scater in r-bioc-scater-1.32.1+ds dpkg-source: info: unpacking r-bioc-scater_1.32.1+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-scater_1.32.1+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying exclude_snifter_from_test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8305/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='565bd609ea61447890f112517dd53d0e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8305' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hwx8Sstq/pbuilderrc_hj3m --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hwx8Sstq/b1 --logfile b1/build.log r-bioc-scater_1.32.1+ds-1.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-26-armmp-lpae #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/8305/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment (>= 1.26.0), r-bioc-scuttle (>= 1.14.0), r-cran-ggplot2, r-cran-matrix, r-bioc-biocgenerics (>= 0.50.0), r-bioc-s4vectors (>= 0.42.1), r-bioc-summarizedexperiment (>= 1.34.0), r-bioc-delayedarray (>= 0.30.1), r-bioc-matrixgenerics (>= 1.16.0), r-bioc-beachmat (>= 2.20.0), r-bioc-biocneighbors (>= 1.22.0), r-bioc-biocsingular (>= 1.20.0), r-bioc-biocparallel (>= 1.38.0), r-cran-rlang, r-cran-ggbeeswarm, r-cran-viridis, r-cran-rtsne, r-cran-rcolorbrewer, r-cran-rcppml, r-cran-uwot, r-cran-pheatmap, r-cran-ggrepel, r-cran-ggrastr dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19506 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment (>= 1.26.0); however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-scuttle (>= 1.14.0); however: Package r-bioc-scuttle is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.50.0); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.42.1); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedarray (>= 0.30.1); however: Package r-bioc-delayedarray is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-matrixgenerics (>= 1.16.0); however: Package r-bioc-matrixgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-beachmat (>= 2.20.0); however: Package r-bioc-beachmat is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocneighbors (>= 1.22.0); however: Package r-bioc-biocneighbors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocsingular (>= 1.20.0); however: Package r-bioc-biocsingular is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel (>= 1.38.0); however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rlang; however: Package r-cran-rlang is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggbeeswarm; however: Package r-cran-ggbeeswarm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-viridis; however: Package r-cran-viridis is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rtsne; however: Package r-cran-rtsne is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcolorbrewer; however: Package r-cran-rcolorbrewer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcppml; however: Package r-cran-rcppml is not installed. pbuilder-satisfydepends-dummy depends on r-cran-uwot; however: Package r-cran-uwot is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pheatmap; however: Package r-cran-pheatmap is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrepel; however: Package r-cran-ggrepel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggrastr; however: Package r-cran-ggrastr is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-matrixgenerics{a} r-bioc-s4vectors{a} r-cran-beeswarm{a} r-cran-bh{a} r-cran-cairo{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-dqrng{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fnn{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrastr{a} r-cran-ggrepel{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-irlba{a} r-cran-isoband{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-r6{a} r-cran-ragg{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppannoy{a} r-cran-rcppeigen{a} r-cran-rcppml{a} r-cran-rcppprogress{a} r-cran-rlang{a} r-cran-rspectra{a} r-cran-rtsne{a} r-cran-scales{a} r-cran-sitmo{a} r-cran-systemfonts{a} r-cran-textshaping{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-uwot{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpcg-cpp-dev libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-bench r-cran-bit64 r-cran-brio r-cran-callr r-cran-codetools r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-formattable r-cran-fs r-cran-generics r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-patchwork r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-rcpphnsw r-cran-readr r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-stringi r-cran-stringr r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-tinytest r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-vioplot r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 157 MB of archives. After unpacking 516 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: r-bioc-singlecellexperiment (>= 1.26.0) but it is not installable Depends: r-bioc-scuttle (>= 1.14.0) which is a virtual package and is not provided by any available package Depends: r-bioc-summarizedexperiment (>= 1.34.0) but it is not installable Depends: r-bioc-delayedarray (>= 0.30.1) which is a virtual package and is not provided by any available package Depends: r-bioc-beachmat (>= 2.20.0) which is a virtual package and is not provided by any available package Depends: r-bioc-biocneighbors (>= 1.22.0) which is a virtual package and is not provided by any available package Depends: r-bioc-biocsingular (>= 1.20.0) which is a virtual package and is not provided by any available package Depends: r-bioc-biocparallel (>= 1.38.0) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} littler{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-matrixgenerics{a} r-bioc-s4vectors{a} r-cran-beeswarm{a} r-cran-bh{a} r-cran-cairo{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-cpp11{a} r-cran-dqrng{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fnn{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-ggrastr{a} r-cran-ggrepel{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-irlba{a} r-cran-isoband{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pheatmap{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-png{a} r-cran-r6{a} r-cran-ragg{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppannoy{a} r-cran-rcppeigen{a} r-cran-rcppml{a} r-cran-rcppprogress{a} r-cran-rlang{a} r-cran-rspectra{a} r-cran-rtsne{a} r-cran-scales{a} r-cran-sitmo{a} r-cran-systemfonts{a} r-cran-textshaping{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-uwot{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpcg-cpp-dev libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-bench r-cran-bit64 r-cran-brio r-cran-callr r-cran-codetools r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-formattable r-cran-fs r-cran-generics r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-multcomp r-cran-mvtnorm r-cran-patchwork r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-rcpphnsw r-cran-readr r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-stringi r-cran-stringr r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-tinytest r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-vioplot r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 249 newly installed, 0 to remove and 0 not upgraded. Need to get 157 MB of archives. After unpacking 516 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8305 and its subdirectories Sun Oct 6 13:36:06 UTC 2024 W: No second build log, what happened? Sun Oct 6 13:36:06 UTC 2024 W: Downloading the build dependencies failed Sun Oct 6 13:36:06 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sun Oct 6 13:36:06 UTC 2024 W: Network problems are automatically rescheduled after some hours.