Sat Oct 5 18:26:36 UTC 2024 I: starting to build r-bioc-noiseq/unstable/armhf on jenkins on '2024-10-05 18:26' Sat Oct 5 18:26:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_27/9484/console.log Sat Oct 5 18:26:36 UTC 2024 I: Downloading source for unstable/r-bioc-noiseq=2.48.0-1 --2024-10-05 18:26:36-- http://deb.debian.org/debian/pool/main/r/r-bioc-noiseq/r-bioc-noiseq_2.48.0-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2061 (2.0K) [text/prs.lines.tag] Saving to: ‘r-bioc-noiseq_2.48.0-1.dsc’ 0K .. 100% 152M=0s 2024-10-05 18:26:36 (152 MB/s) - ‘r-bioc-noiseq_2.48.0-1.dsc’ saved [2061/2061] Sat Oct 5 18:26:36 UTC 2024 I: r-bioc-noiseq_2.48.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-noiseq Binary: r-bioc-noiseq Architecture: all Version: 2.48.0-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/NOISeq/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-noiseq Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-noiseq.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-cran-matrix Package-List: r-bioc-noiseq deb gnu-r optional arch=all Checksums-Sha1: 382bc3bfaeacc59583f6cfdbfec55d5fc58998dc 1978384 r-bioc-noiseq_2.48.0.orig.tar.gz c440baf227222fce62fd0b24730fe896934b2fd4 5572 r-bioc-noiseq_2.48.0-1.debian.tar.xz Checksums-Sha256: 7fd5002ed01dd9371cb971cba591ae8f0ef89bb1b6e7adde9dc4a1f2e025f0aa 1978384 r-bioc-noiseq_2.48.0.orig.tar.gz b8ad16cd3847ca3163174e513cf8c3eca0612819e6795e50a27b69e80e8070de 5572 r-bioc-noiseq_2.48.0-1.debian.tar.xz Files: 53cdfbc42a3d474bb3ead14299dec340 1978384 r-bioc-noiseq_2.48.0.orig.tar.gz b9eb87e3acdc39ce4f61ecfc70e75691 5572 r-bioc-noiseq_2.48.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAma/YwoACgkQPCZ2P2xn 5uK5ThAAl6k2i/B8eRY0TeZ89kVoEAQFBmVNMnpmigmZEPhZECp+kwZIc34HuBMK 7bMITnsglXI7rWNsivejOjM0GCrWPbMffkY4XaNpkvKcldBapA792gf0t49J1mpb TKplm2wgijM1d8Nn+2yF786xbusXCKV3qXWOHS0BiXAwl8ERGvVX6ZuzRQKai63j dsEXmS071js3qyR8fFWSC80YRRaiJeXQFUrEMFF1GW2HFNe1K2kSdHEsMcFreYn1 EnjxLp+yY+7W8yDrf3R9iFx67pPv/20jFemlv/WuQ2Z+kkiN/y42lBo6b2Sx9lLS zDKd/Y9vahhELoXnbm46g883wOuo0p5+OB42MUeb0HDNEW9GuwBBypfZwnlnZ/9a AWzlOljkp3MkoJjw5xfbtM8sRCtbabjbwFG30mb41pyfwtooyntsueofEc1IrmMr bPe0VepfHqS6fj5Y9yngMTgMO+YhtfUNFn1c+9taJXU18cdPYzqh1Je6mkJ0Lvgw PvkUj0DudnSXy1yb9qVVBDdGPqlSADIFK5z552/cWTLo/VdX772PZy34oXQE/1mU v7ln3On1aEh5mOhlTiGZqy3DcOItxECC8AZranLxH2OMjV3W0BaEtxiScTNXwNZh DEDVdNWAl4C8md5/cpKko/+YmbUoGqwo99sXUjAhzwYA+wp5Ugg= =oAbj -----END PGP SIGNATURE----- Sat Oct 5 18:26:36 UTC 2024 I: Checking whether the package is not for us Sat Oct 5 18:26:36 UTC 2024 I: Starting 1st build on remote node virt64z-armhf-rb.debian.net. Sat Oct 5 18:26:36 UTC 2024 I: Preparing to do remote build '1' on virt64z-armhf-rb.debian.net. Sat Oct 5 18:29:37 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 5 06:26:42 -12 2024 I: pbuilder-time-stamp: 1728152802 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-noiseq_2.48.0-1.dsc] I: copying [./r-bioc-noiseq_2.48.0.orig.tar.gz] I: copying [./r-bioc-noiseq_2.48.0-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 14:32:42 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-noiseq_2.48.0-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-noiseq in r-bioc-noiseq-2.48.0 dpkg-source: info: unpacking r-bioc-noiseq_2.48.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-noiseq_2.48.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24641/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='37cd63d16a5c41a4946a3e32b41631a8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24641' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AEtiyxXu/pbuilderrc_lKad --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AEtiyxXu/b1 --logfile b1/build.log r-bioc-noiseq_2.48.0-1.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64z 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/24641/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-cran-matrix dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19506 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biobase; however: Package r-bioc-biobase is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-arm-linux-gnueabihf{a} gfortran-arm-linux-gnueabihf{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-cran-lattice{a} r-cran-matrix{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 189 newly installed, 0 to remove and 0 not upgraded. Need to get 101 MB of archives. After unpacking 271 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-2 [256 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.3.2-1 [1348 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf zip armhf 3.0-14 [221 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf unzip armhf 6.0-28 [152 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libpaper1 armhf 1.1.29+b1 [12.2 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libpaper-utils armhf 1.1.29+b1 [8700 B] Get: 40 http://deb.debian.org/debian unstable/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.44-2 [263 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2 [140 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-2 [114 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-2 [105 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.2-2 [443 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 65 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3 [163 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.63.0-1 [62.9 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-7 [199 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.10.1-1 [303 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.21-1 [36.3 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.82.1-1 [1325 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-5 [262 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.15-1 [70.0 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 9.0.0-1 [417 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.54.0+ds-2 [198 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.54.0+ds-2 [47.5 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.54.0+ds-2 [31.1 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.15+dfsg-2 [934 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b1 [46.4 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b1 [16.4 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.15-1 [697 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libice6 armhf 2:1.0.10-1+b1 [50.1 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libsm6 armhf 2:1.2.3-1+b1 [31.7 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libxt6t64 armhf 1:1.2.1-1.2 [159 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf r-base-core armhf 4.4.1-3 [28.0 MB] Get: 107 http://deb.debian.org/debian unstable/main armhf libgfortran-14-dev armhf 14.2.0-5 [315 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf gfortran-14-arm-linux-gnueabihf armhf 14.2.0-5 [8719 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf gfortran-14 armhf 14.2.0-5 [11.8 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf gfortran-arm-linux-gnueabihf armhf 4:14.1.0-2 [1288 B] Get: 111 http://deb.debian.org/debian unstable/main armhf gfortran armhf 4:14.1.0-2 [1432 B] Get: 112 http://deb.debian.org/debian unstable/main armhf libblas-dev armhf 3.12.0-3 [119 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf liblapack-dev armhf 3.12.0-3 [1903 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libncurses6 armhf 6.5-2 [81.8 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libncurses-dev armhf 6.5-2 [309 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libreadline-dev armhf 8.2-5 [138 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-3 [260 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-3 [71.9 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf libpcre2-16-0 armhf 10.42-4+b1 [212 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libpcre2-32-0 armhf 10.42-4+b1 [203 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf libpcre2-posix3 armhf 10.42-4+b1 [55.3 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf libpcre2-dev armhf 10.42-4+b1 [668 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf libpng-dev armhf 1.6.44-2 [349 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.2-2 [288 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf icu-devtools armhf 72.1-5 [185 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf libicu-dev armhf 72.1-5 [10.1 MB] Get: 129 http://deb.debian.org/debian unstable/main armhf libxmuu1 armhf 2:1.1.3-3+b2 [21.2 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf xauth armhf 1:1.1.2-1 [33.2 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-3 [31.7 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-3 [29.1 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-3 [26.1 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf libtirpc-dev armhf 1.3.4+ds-1.3 [180 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.21-1 [44.5 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf r-base-dev all 4.4.1-3 [4512 B] Get: 137 http://deb.debian.org/debian unstable/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf libclone-perl armhf 0.47-1 [13.0 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian unstable/main armhf liburi-perl all 5.29-1 [103 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf libhttp-message-perl all 6.46-1 [79.7 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf libparams-util-perl armhf 1.102-3 [23.0 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian unstable/main armhf libb-hooks-op-check-perl armhf 0.22-3+b1 [10.2 kB] Get: 151 http://deb.debian.org/debian unstable/main armhf libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian unstable/main armhf libdevel-callchecker-perl armhf 0.009-1 [15.7 kB] Get: 153 http://deb.debian.org/debian unstable/main armhf libparams-classify-perl armhf 0.015-2+b3 [21.3 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian unstable/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian unstable/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian unstable/main armhf libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf libclass-load-xs-perl armhf 0.10-2+b3 [13.8 kB] Get: 160 http://deb.debian.org/debian unstable/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian unstable/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian unstable/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian unstable/main armhf libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian unstable/main armhf libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian unstable/main armhf libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian unstable/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian unstable/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf libpackage-stash-xs-perl armhf 0.30-1+b3 [18.4 kB] Get: 173 http://deb.debian.org/debian unstable/main armhf libmoose-perl armhf 2.2207-1+b1 [766 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf libvariable-magic-perl armhf 0.64-1 [42.2 kB] Get: 175 http://deb.debian.org/debian unstable/main armhf libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian unstable/main armhf libsub-identify-perl armhf 0.14-3+b2 [10.8 kB] Get: 177 http://deb.debian.org/debian unstable/main armhf libsub-name-perl armhf 0.27-1+b2 [12.0 kB] Get: 178 http://deb.debian.org/debian unstable/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.4.0-1 [55.1 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf libngtcp2-16 armhf 1.6.0-1 [118 kB] Get: 181 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.6.0-1 [17.1 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.10.1-1 [308 kB] Get: 183 http://deb.debian.org/debian unstable/main armhf libwww-curl-perl armhf 4.17-10+b2 [56.1 kB] Get: 184 http://deb.debian.org/debian unstable/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian unstable/main armhf r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 187 http://deb.debian.org/debian unstable/main armhf r-bioc-biobase armhf 2.64.0-4 [2130 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf r-cran-lattice armhf 0.22-6-1 [1391 kB] Get: 189 http://deb.debian.org/debian unstable/main armhf r-cran-matrix armhf 1.7-0-3 [4046 kB] Fetched 101 MB in 2s (43.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19506 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-2_all.deb ... Unpacking tzdata (2024b-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-1_armhf.deb ... Unpacking openssl (3.3.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../009-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-9_armhf.deb ... Unpacking bsdextrautils (2.40.2-9) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../012-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3_armhf.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../027-libelf1t64_0.191-2_armhf.deb ... Unpacking libelf1t64:armhf (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../029-libicu72_72.1-5_armhf.deb ... Unpacking libicu72:armhf (72.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-14_armhf.deb ... Unpacking zip (3.0-14) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28_armhf.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package libpaper1:armhf. Preparing to unpack .../037-libpaper1_1.1.29+b1_armhf.deb ... Unpacking libpaper1:armhf (1.1.29+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29+b1_armhf.deb ... Unpacking libpaper-utils (1.1.29+b1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../040-libblas3_3.12.0-3_armhf.deb ... Unpacking libblas3:armhf (3.12.0-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../041-libexpat1_2.6.3-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../042-libbrotli1_1.1.0-2+b4_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b4) ... Selecting previously unselected package libpng16-16t64:armhf. Preparing to unpack .../043-libpng16-16t64_1.6.44-2_armhf.deb ... Unpacking libpng16-16t64:armhf (1.6.44-2) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../044-libfreetype6_2.13.3+dfsg-1_armhf.deb ... Unpacking libfreetype6:armhf (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../045-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. 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Selecting previously unselected package libglib2.0-0t64:armhf. Preparing to unpack .../075-libglib2.0-0t64_2.82.1-1_armhf.deb ... Unpacking libglib2.0-0t64:armhf (2.82.1-1) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../076-libjpeg62-turbo_1%3a2.1.5-3_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.1.5-3) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../077-libgfortran5_14.2.0-5_armhf.deb ... Unpacking libgfortran5:armhf (14.2.0-5) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../078-liblapack3_3.12.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.12.0-3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../079-fontconfig_2.15.0-1.1_armhf.deb ... Unpacking fontconfig (2.15.0-1.1) ... Selecting previously unselected package libfribidi0:armhf. Preparing to unpack .../080-libfribidi0_1.0.15-1_armhf.deb ... Unpacking libfribidi0:armhf (1.0.15-1) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../081-libgraphite2-3_1.3.14-2_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.14-2) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../082-libharfbuzz0b_9.0.0-1_armhf.deb ... Unpacking libharfbuzz0b:armhf (9.0.0-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../083-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libdatrie1:armhf. Preparing to unpack .../084-libdatrie1_0.2.13-3_armhf.deb ... Unpacking libdatrie1:armhf (0.2.13-3) ... Selecting previously unselected package libthai0:armhf. Preparing to unpack .../085-libthai0_0.1.29-2_armhf.deb ... Unpacking libthai0:armhf (0.1.29-2) ... Selecting previously unselected package libpango-1.0-0:armhf. Preparing to unpack .../086-libpango-1.0-0_1.54.0+ds-2_armhf.deb ... Unpacking libpango-1.0-0:armhf (1.54.0+ds-2) ... Selecting previously unselected package libpangoft2-1.0-0:armhf. Preparing to unpack .../087-libpangoft2-1.0-0_1.54.0+ds-2_armhf.deb ... Unpacking libpangoft2-1.0-0:armhf (1.54.0+ds-2) ... Selecting previously unselected package libpangocairo-1.0-0:armhf. Preparing to unpack .../088-libpangocairo-1.0-0_1.54.0+ds-2_armhf.deb ... Unpacking libpangocairo-1.0-0:armhf (1.54.0+ds-2) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../089-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libtcl8.6:armhf. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_armhf.deb ... Unpacking libtcl8.6:armhf (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../091-libjbig0_2.1-6.1+b1_armhf.deb ... Unpacking libjbig0:armhf (2.1-6.1+b1) ... Selecting previously unselected package liblerc4:armhf. Preparing to unpack .../092-liblerc4_4.0.0+ds-4+b1_armhf.deb ... Unpacking liblerc4:armhf (4.0.0+ds-4+b1) ... Selecting previously unselected package libsharpyuv0:armhf. Preparing to unpack .../093-libsharpyuv0_1.4.0-0.1_armhf.deb ... Unpacking libsharpyuv0:armhf (1.4.0-0.1) ... Selecting previously unselected package libwebp7:armhf. Preparing to unpack .../094-libwebp7_1.4.0-0.1_armhf.deb ... Unpacking libwebp7:armhf (1.4.0-0.1) ... Selecting previously unselected package libtiff6:armhf. Preparing to unpack .../095-libtiff6_4.5.1+git230720-5_armhf.deb ... Unpacking libtiff6:armhf (4.5.1+git230720-5) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../096-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../097-libtirpc3t64_1.3.4+ds-1.3_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libxft2:armhf. Preparing to unpack .../098-libxft2_2.3.6-1+b1_armhf.deb ... Unpacking libxft2:armhf (2.3.6-1+b1) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:armhf. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b1_armhf.deb ... Unpacking libxss1:armhf (1:1.2.3-1+b1) ... Selecting previously unselected package libtk8.6:armhf. Preparing to unpack .../101-libtk8.6_8.6.15-1_armhf.deb ... Unpacking libtk8.6:armhf (8.6.15-1) ... Selecting previously unselected package libice6:armhf. Preparing to unpack .../102-libice6_2%3a1.0.10-1+b1_armhf.deb ... Unpacking libice6:armhf (2:1.0.10-1+b1) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../103-libsm6_2%3a1.2.3-1+b1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.3-1+b1) ... Selecting previously unselected package libxt6t64:armhf. Preparing to unpack .../104-libxt6t64_1%3a1.2.1-1.2_armhf.deb ... Unpacking libxt6t64:armhf (1:1.2.1-1.2) ... Selecting previously unselected package r-base-core. Preparing to unpack .../105-r-base-core_4.4.1-3_armhf.deb ... Unpacking r-base-core (4.4.1-3) ... Selecting previously unselected package libgfortran-14-dev:armhf. Preparing to unpack .../106-libgfortran-14-dev_14.2.0-5_armhf.deb ... Unpacking libgfortran-14-dev:armhf (14.2.0-5) ... Selecting previously unselected package gfortran-14-arm-linux-gnueabihf. Preparing to unpack .../107-gfortran-14-arm-linux-gnueabihf_14.2.0-5_armhf.deb ... Unpacking gfortran-14-arm-linux-gnueabihf (14.2.0-5) ... Selecting previously unselected package gfortran-14. Preparing to unpack .../108-gfortran-14_14.2.0-5_armhf.deb ... Unpacking gfortran-14 (14.2.0-5) ... Selecting previously unselected package gfortran-arm-linux-gnueabihf. Preparing to unpack .../109-gfortran-arm-linux-gnueabihf_4%3a14.1.0-2_armhf.deb ... Unpacking gfortran-arm-linux-gnueabihf (4:14.1.0-2) ... Selecting previously unselected package gfortran. Preparing to unpack .../110-gfortran_4%3a14.1.0-2_armhf.deb ... Unpacking gfortran (4:14.1.0-2) ... Selecting previously unselected package libblas-dev:armhf. Preparing to unpack .../111-libblas-dev_3.12.0-3_armhf.deb ... Unpacking libblas-dev:armhf (3.12.0-3) ... Selecting previously unselected package liblapack-dev:armhf. Preparing to unpack .../112-liblapack-dev_3.12.0-3_armhf.deb ... Unpacking liblapack-dev:armhf (3.12.0-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../113-libncurses6_6.5-2_armhf.deb ... Unpacking libncurses6:armhf (6.5-2) ... Selecting previously unselected package libncurses-dev:armhf. Preparing to unpack .../114-libncurses-dev_6.5-2_armhf.deb ... Unpacking libncurses-dev:armhf (6.5-2) ... Selecting previously unselected package libreadline-dev:armhf. Preparing to unpack .../115-libreadline-dev_8.2-5_armhf.deb ... Unpacking libreadline-dev:armhf (8.2-5) ... Selecting previously unselected package libjpeg62-turbo-dev:armhf. Preparing to unpack .../116-libjpeg62-turbo-dev_1%3a2.1.5-3_armhf.deb ... Unpacking libjpeg62-turbo-dev:armhf (1:2.1.5-3) ... Selecting previously unselected package libjpeg-dev:armhf. Preparing to unpack .../117-libjpeg-dev_1%3a2.1.5-3_armhf.deb ... Unpacking libjpeg-dev:armhf (1:2.1.5-3) ... Selecting previously unselected package libpcre2-16-0:armhf. Preparing to unpack .../118-libpcre2-16-0_10.42-4+b1_armhf.deb ... Unpacking libpcre2-16-0:armhf (10.42-4+b1) ... Selecting previously unselected package libpcre2-32-0:armhf. Preparing to unpack .../119-libpcre2-32-0_10.42-4+b1_armhf.deb ... Unpacking libpcre2-32-0:armhf (10.42-4+b1) ... Selecting previously unselected package libpcre2-posix3:armhf. Preparing to unpack .../120-libpcre2-posix3_10.42-4+b1_armhf.deb ... Unpacking libpcre2-posix3:armhf (10.42-4+b1) ... Selecting previously unselected package libpcre2-dev:armhf. Preparing to unpack .../121-libpcre2-dev_10.42-4+b1_armhf.deb ... Unpacking libpcre2-dev:armhf (10.42-4+b1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Selecting previously unselected package libpng-dev:armhf. Preparing to unpack .../123-libpng-dev_1.6.44-2_armhf.deb ... Unpacking libpng-dev:armhf (1.6.44-2) ... Selecting previously unselected package libbz2-dev:armhf. 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Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:armhf (1:1.0.9-1+b1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up libkeyutils1:armhf (1.6.3-3) ... Setting up libxcb1:armhf (1.17.0-2) ... Setting up libicu72:armhf (72.1-5) ... Setting up liblerc4:armhf (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40.2-9) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libdatrie1:armhf (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libxcb-render0:armhf (1.17.0-2) ... Setting up libclone-perl:armhf (0.47-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up unzip (6.0-28) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b4) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:armhf (0.21.2-1.1) ... Setting up libnghttp2-14:armhf (1.63.0-1) ... Setting up libdeflate0:armhf (1.21-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:armhf (1.17.0-2) ... Setting up libcom-err2:armhf (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libpcre2-16-0:armhf (10.42-4+b1) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Oct 5 18:28:06 UTC 2024. Universal Time is now: Sat Oct 5 18:28:06 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... Setting up libpackage-stash-xs-perl:armhf (0.30-1+b3) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:armhf (10.42-4+b1) ... Setting up libglib2.0-0t64:armhf (2.82.1-1) ... No schema files found: doing nothing. Setting up libblas3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libpkgconf3:armhf (1.8.1-3) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-3) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Setting up libncurses6:armhf (6.5-2) ... Setting up libfribidi0:armhf (1.0.15-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.44-2) ... Setting up libvariable-magic-perl (0.64-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:armhf (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:armhf (0.22-3+b1) ... Setting up icu-devtools (72.1-5) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-3) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libparams-util-perl (1.102-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up libgfortran5:armhf (14.2.0-5) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.4.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:armhf (1.4.0-0.1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:armhf (5.6.2-2) ... Setting up libsub-name-perl:armhf (0.27-1+b2) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1) ... Setting up libpcre2-posix3:armhf (10.42-4+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:armhf (4.5.1+git230720-5) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libngtcp2-16:armhf (1.6.0-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libssh2-1t64:armhf (1.11.0-7) ... Setting up openssl (3.3.2-1) ... Setting up libdeflate-dev:armhf (1.21-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:armhf (72.1-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.29-1) ... Setting up libxmuu1:armhf (2:1.1.3-3+b2) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.6.0-1) ... Setting up libblas-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode Setting up dctrl-tools (2.24-3) ... Setting up libbz2-dev:armhf (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:armhf (14.2.0-5) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:armhf (2:1.0.10-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up libncurses-dev:armhf (6.5-2) ... Setting up gettext (0.22.5-2) ... Setting up libpcre2-dev:armhf (10.42-4+b1) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libpng-dev:armhf (1.6.44-2) ... Setting up libjpeg-dev:armhf (1:2.1.5-3) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:armhf (0.009-1) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3) ... Setting up pkgconf:armhf (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:armhf (2.13.3+dfsg-1) ... Setting up liblapack-dev:armhf (3.12.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1) ... Setting up groff-base (1.23.0-5) ... Setting up libharfbuzz0b:armhf (9.0.0-1) ... Setting up libxss1:armhf (1:1.2.3-1+b1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:armhf (2:1.2.3-1+b1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up gfortran-14-arm-linux-gnueabihf (14.2.0-5) ... Setting up libpaper1:armhf (1.1.29+b1) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libxft2:armhf (2.3.6-1+b1) ... Setting up libcurl4t64:armhf (8.10.1-1) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:armhf (8.6.15-1) ... Setting up libparams-classify-perl:armhf (0.015-2+b3) ... Setting up libpango-1.0-0:armhf (1.54.0+ds-2) ... Setting up libcurl3t64-gnutls:armhf (8.10.1-1) ... Setting up libwww-curl-perl:armhf (4.17-10+b2) ... Setting up libpaper-utils (1.1.29+b1) ... Setting up libreadline-dev:armhf (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.2-2) ... Setting up gfortran-arm-linux-gnueabihf (4:14.1.0-2) ... Setting up libtirpc-dev:armhf (1.3.4+ds-1.3) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:armhf (1:1.2.1-1.2) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:armhf (1.54.0+ds-2) ... Setting up gfortran-14 (14.2.0-5) ... Setting up libpangocairo-1.0-0:armhf (1.54.0+ds-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up gfortran (4:14.1.0-2) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.1-3) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-6-1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b3) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-base-dev (4.4.1-3) ... Setting up libmoose-perl:armhf (2.2207-1+b1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-cran-matrix (1.7-0-3) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-noiseq-2.48.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-noiseq_2.48.0-1_source.changes dpkg-buildpackage: info: source package r-bioc-noiseq dpkg-buildpackage: info: source version 2.48.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/r-bioc-noiseq-2.48.0' dh_auto_install I: R Package: NOISeq Version: 2.48.0 I: Building using R version 4.4.1-3 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 16 Aug 2024 16:32:21 +0200 mkdir -p /build/reproducible-path/r-bioc-noiseq-2.48.0/debian/r-bioc-noiseq/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-noiseq-2.48.0/debian/r-bioc-noiseq/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 16 Aug 2024 16:32:21 +0200'" * installing *source* package 'NOISeq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NOISeq) W: Ignoring specified R dependency: R (>= 2.13.0) I: Using r-bioc-biobase for Depends:Biobase (>= 2.13.11) I: Version replacement between package version 1.2 and Debian version 1.7-0-3 suspicious. Do not replace anything. I: Using r-cran-matrix by changing version to (>= 1.2) for Depends:Matrix (>= 1.2) I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-noiseq as Debian binary package for variables substitution chmod -x debian/r-bioc-noiseq/usr/lib/R/site-library/NOISeq/doc/NOISeq.Rnw make[1]: Leaving directory '/build/reproducible-path/r-bioc-noiseq-2.48.0' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-noiseq' in '../r-bioc-noiseq_2.48.0-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-noiseq_2.48.0-1_armhf.buildinfo dpkg-genchanges --build=binary -O../r-bioc-noiseq_2.48.0-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24641 and its subdirectories I: Current time: Sat Oct 5 06:29:29 -12 2024 I: pbuilder-time-stamp: 1728152969 Sat Oct 5 18:29:39 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32a-armhf-rb.debian.net. Sat Oct 5 18:29:39 UTC 2024 I: Preparing to do remote build '2' on virt32a-armhf-rb.debian.net. Sat Oct 5 18:32:19 UTC 2024 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. Sat Oct 5 18:32:21 UTC 2024 I: r-bioc-noiseq_2.48.0-1_armhf.changes: Format: 1.8 Date: Fri, 16 Aug 2024 16:32:21 +0200 Source: r-bioc-noiseq Binary: r-bioc-noiseq Architecture: all Version: 2.48.0-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-noiseq - Exploratory analysis and differential expression for RNA-seq data Changes: r-bioc-noiseq (2.48.0-1) unstable; urgency=medium . * Team upload. * Upload to unstable. Checksums-Sha1: 877cbb7ec33c89a9729e07691e7de0192dcadbff 2339028 r-bioc-noiseq_2.48.0-1_all.deb 0b78686fa2edb0f29ffae52105bca4d481e6a291 9681 r-bioc-noiseq_2.48.0-1_armhf.buildinfo Checksums-Sha256: 6907b9dfe26254cbfcff3811926643402b4919cd168963c376e940a2afcb357b 2339028 r-bioc-noiseq_2.48.0-1_all.deb 53066c4dc5eab949ed01dd736710c9871c5ffbb12c3eed3c7ce5592e609180a2 9681 r-bioc-noiseq_2.48.0-1_armhf.buildinfo Files: 591a1505fdc01b32c0e5459183b8b2e3 2339028 gnu-r optional r-bioc-noiseq_2.48.0-1_all.deb aedbf569ddfa39ab366de3a414a78ade 9681 gnu-r optional r-bioc-noiseq_2.48.0-1_armhf.buildinfo Sat Oct 5 18:32:23 UTC 2024 I: diffoscope 278 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_27-9484.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.AEtiyxXu/r-bioc-noiseq_2.48.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.AEtiyxXu/r-bioc-noiseq_2.48.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.AEtiyxXu/r-bioc-noiseq_2.48.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.AEtiyxXu/b1/r-bioc-noiseq_2.48.0-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.AEtiyxXu/b2/r-bioc-noiseq_2.48.0-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.392s) 0.392s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.040s) 0.040s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 710ms CPU time consumed: 711ms Sat Oct 5 18:32:24 UTC 2024 I: diffoscope 278 found no differences in the changes files, and a .buildinfo file also exists. Sat Oct 5 18:32:24 UTC 2024 I: r-bioc-noiseq from unstable built successfully and reproducibly on armhf. Sat Oct 5 18:32:25 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Oct 5 18:32:25 UTC 2024 I: Submitting 12K b1/r-bioc-noiseq_2.48.0-1_armhf.buildinfo.asc Sat Oct 5 18:32:28 UTC 2024 I: Submitting 12K b2/r-bioc-noiseq_2.48.0-1_armhf.buildinfo.asc Sat Oct 5 18:32:34 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Oct 5 18:32:34 UTC 2024 I: Done submitting .buildinfo files. Sat Oct 5 18:32:34 UTC 2024 I: Removing signed r-bioc-noiseq_2.48.0-1_armhf.buildinfo.asc files: removed './b1/r-bioc-noiseq_2.48.0-1_armhf.buildinfo.asc' removed './b2/r-bioc-noiseq_2.48.0-1_armhf.buildinfo.asc'