Thu Nov 28 20:39:11 UTC 2024 I: starting to build python-pyvcf/unstable/armhf on jenkins on '2024-11-28 20:38' Thu Nov 28 20:39:11 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_34/12605/console.log Thu Nov 28 20:39:11 UTC 2024 I: Downloading source for unstable/python-pyvcf=0.6.8+git20170215.476169c-11 --2024-11-28 20:39:11-- http://deb.debian.org/debian/pool/main/p/python-pyvcf/python-pyvcf_0.6.8%2bgit20170215.476169c-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2377 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ 0K .. 100% 314M=0s 2024-11-28 20:39:11 (314 MB/s) - ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ saved [2377/2377] Thu Nov 28 20:39:11 UTC 2024 I: python-pyvcf_0.6.8+git20170215.476169c-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyvcf Binary: python3-vcf, pyvcf, python-pyvcf-examples Architecture: any all Version: 0.6.8+git20170215.476169c-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jamescasbon/PyVCF Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pyvcf Vcs-Git: https://salsa.debian.org/med-team/python-pyvcf.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest , python3-pysam Package-List: python-pyvcf-examples deb python optional arch=all python3-vcf deb python optional arch=any pyvcf deb python optional arch=all Checksums-Sha1: fd87bba83272c2a1bbdb7ab633ef90e4b12b3836 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 5680a335404c24260efb2e8488ea18f7ebd87618 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Checksums-Sha256: df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 128b98a270b89df23931de8204327c4771d550a82b94a842d3698d486be89a48 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Files: 257a20310260fb287a7ec4f2b5a35678 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 975be4f7a144d117a49cea17c46d0410 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEUtW9Dn1NsITjS1hl1KQc+t2yDbUFAmdF98kACgkQ1KQc+t2y DbUyCxAApjDfCXzyHbFQuojN4hIm2y77pRuuMzCl7h1hJcBD84cBMysyKHqtozqj dL05JodJSNKXIZCJK8t1s0fJendb8Sxhc5gIDgOj4tmO7E543LyXSVAoLtzgh0WA Br3BSXzB3f63+KcIzDOb3C1bY7dx/3XxgkkRMtiNsvsl23GW0enrn5CeAFpWxzoi voNwvHbqfysHnwk0YhdQ1jZytQ2NdcV3Fpo3Z04Isv5FQ8yFsUtXP9RdDgmNCX+y K+Ws1cWU8vX8+kLVLguRyAXsl+tk4jT+Q0JdG2TJgF+fha2WvdWl0tyuLUnDgKuw ptloHlvHZWRYDLJIt94xoR6ZXn7yKJn70M/zjqhu0sksm1Ssg4Zvhi51HL6Syzx+ 1dHSbmnMk8tQugxi22FGRt5+6Kv6NYZR250T0d6UDORJZL80LhyOabUQ9FEhVLLn /rLbVZmd/GIMdojsBZn4K/ZpWdx2U18NRUZHrcYLjDkcAQHli+iyN7Qb2q7kcyKg W9tP2bTRyYbnst1Dal7T/BOCXzfrhAC5BAZdQ9gtcA4urGEaWrzre8qCoGwl4bc1 yghmsjfpwXXm0Q6/Jbeom5iml7JPpIvlxfKoCIuVvfh8gFWQkLiSWnsHWVCj1fhe SVp4YPmOnItQ3jSb+WU6kue2exmyekwfpqyjAgqo5h6NkM7r3Yk= =6lNL -----END PGP SIGNATURE----- Thu Nov 28 20:39:11 UTC 2024 I: Checking whether the package is not for us Thu Nov 28 20:39:11 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Thu Nov 28 20:39:11 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Thu Nov 28 20:41:28 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 28 08:39:17 -12 2024 I: pbuilder-time-stamp: 1732826357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-11.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 26 16:31:05 2024 gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11.dsc: no acceptable signature found dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying quitechar.patch dpkg-source: info: applying replace-pkg-resources-with-importlib.patch dpkg-source: info: applying replace-distutils-with-setuptools.patch dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/409/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='ecd4085300564f0683a13a43b3427104' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='409' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TKhbDxPn/pbuilderrc_OMUa --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TKhbDxPn/b1 --logfile b1/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/409/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 54.7 MB of archives. After unpacking 225 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-3 [800 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-3 [1808 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 12 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3+b1 [71.3 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b3 [35.0 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-3 [1819 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libpython3.13-minimal armhf 3.13.0-2 [843 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf python3.13-minimal armhf 3.13.0-2 [1691 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf cython3 armhf 3.0.11+dfsg-1+b1 [2812 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.2.0-1 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.2.0-1 [731 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20241024 [109 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.6.0-2 [56.8 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libngtcp2-16 armhf 1.9.1-1 [115 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.9.1-1 [15.8 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.11.0-1 [310 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.4-1 [140 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libpython3.12t64 armhf 3.12.7-3 [1848 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libpython3.12-dev armhf 3.12.7-3 [3808 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.12.7-1 [9976 B] Get: 90 http://deb.debian.org/debian unstable/main armhf libpython3.13-stdlib armhf 3.13.0-2 [1850 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libpython3.13 armhf 3.13.0-2 [1843 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libpython3.13-dev armhf 3.13.0-2 [3781 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.12.7-1 [1072 B] Get: 94 http://deb.debian.org/debian unstable/main armhf python3.13 armhf 3.13.0-2 [730 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.12.7-1 [1052 B] Get: 96 http://deb.debian.org/debian unstable/main armhf python3.12-dev armhf 3.12.7-3 [505 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.12.7-1 [26.1 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf python3.13-dev armhf 3.13.0-2 [504 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.12.7-1 [1076 B] Get: 100 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 101 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf python3-pysam armhf 0.22.1+ds-2+b2 [3755 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB] Fetched 54.7 MB in 1s (42.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.4-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_armhf.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:armhf (3.12.7-3) ... Setting up libexpat1:armhf (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20004 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_armhf.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_armhf.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21066 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_armhf.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:armhf. Preparing to unpack .../01-libpython3.13-minimal_3.13.0-2_armhf.deb ... Unpacking libpython3.13-minimal:armhf (3.13.0-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.0-2_armhf.deb ... Unpacking python3.13-minimal (3.13.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../11-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. 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Unpacking libelf1t64:armhf (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../27-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-2_armhf.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... 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Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../38-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../39-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../40-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../41-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../42-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. 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Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../49-libnghttp2-14_1.64.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:armhf. Preparing to unpack .../50-libnghttp3-9_1.6.0-2_armhf.deb ... Unpacking libnghttp3-9:armhf (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:armhf. Preparing to unpack .../51-libngtcp2-16_1.9.1-1_armhf.deb ... Unpacking libngtcp2-16:armhf (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:armhf. Preparing to unpack .../52-libngtcp2-crypto-gnutls8_1.9.1-1_armhf.deb ... Unpacking libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Selecting previously unselected package libpsl5t64:armhf. Preparing to unpack .../53-libpsl5t64_0.21.2-1.1+b1_armhf.deb ... Unpacking libpsl5t64:armhf (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../54-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../55-libssh2-1t64_1.11.1-1_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:armhf. Preparing to unpack .../56-libcurl3t64-gnutls_8.11.0-1_armhf.deb ... Unpacking libcurl3t64-gnutls:armhf (8.11.0-1) ... Selecting previously unselected package libdeflate0:armhf. Preparing to unpack .../57-libdeflate0_1.22-1_armhf.deb ... Unpacking libdeflate0:armhf (1.22-1) ... Selecting previously unselected package libexpat1-dev:armhf. Preparing to unpack .../58-libexpat1-dev_2.6.4-1_armhf.deb ... Unpacking libexpat1-dev:armhf (2.6.4-1) ... Selecting previously unselected package libhtscodecs2:armhf. Preparing to unpack .../59-libhtscodecs2_1.6.1-1_armhf.deb ... Unpacking libhtscodecs2:armhf (1.6.1-1) ... Selecting previously unselected package libhts3t64:armhf. Preparing to unpack .../60-libhts3t64_1.20+ds-2_armhf.deb ... Unpacking libhts3t64:armhf (1.20+ds-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../61-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../62-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../63-libjs-sphinxdoc_7.4.7-4_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-4) ... Selecting previously unselected package libpython3.12t64:armhf. Preparing to unpack .../64-libpython3.12t64_3.12.7-3_armhf.deb ... Unpacking libpython3.12t64:armhf (3.12.7-3) ... Selecting previously unselected package zlib1g-dev:armhf. 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Unpacking libpython3.13-dev:armhf (3.13.0-2) ... Selecting previously unselected package libpython3-all-dev:armhf. Preparing to unpack .../71-libpython3-all-dev_3.12.7-1_armhf.deb ... Unpacking libpython3-all-dev:armhf (3.12.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../72-python3.13_3.13.0-2_armhf.deb ... Unpacking python3.13 (3.13.0-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../73-python3-all_3.12.7-1_armhf.deb ... Unpacking python3-all (3.12.7-1) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../74-python3.12-dev_3.12.7-3_armhf.deb ... Unpacking python3.12-dev (3.12.7-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../75-python3-dev_3.12.7-1_armhf.deb ... Unpacking python3-dev (3.12.7-1) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../76-python3.13-dev_3.13.0-2_armhf.deb ... 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Unpacking python3-pytest (8.3.3-1) ... Setting up libhtscodecs2:armhf (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:armhf (1.5.8-1) ... Setting up libkeyutils1:armhf (1.6.3-4) ... Setting up libicu72:armhf (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:armhf (1.1.0-2+b6) ... Setting up libmagic1t64:armhf (1:5.45-3+b1) ... Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ... Setting up libnghttp2-14:armhf (1.64.0-1) ... Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 28 20:40:03 UTC 2024. Universal Time is now: Thu Nov 28 20:40:03 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:armhf (3.13.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:armhf (2.6.4-1) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:armhf (1.6.0-2) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.0-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:armhf (1.9.1-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:armhf (1.9.1-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:armhf (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:armhf (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3.13-stdlib:armhf (3.13.0-2) ... Setting up libpython3.13:armhf (3.13.0-2) ... Setting up libtirpc3t64:armhf (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:armhf (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:armhf (3.13.0-2) ... Setting up libnsl2:armhf (1.3.0-3+b3) ... Setting up libhts3t64:armhf (1.20+ds-2) ... Setting up libpython3.12-stdlib:armhf (3.12.7-3) ... Setting up python3.13-dev (3.13.0-2) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:armhf (3.12.7-3) ... Setting up libpython3-stdlib:armhf (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:armhf (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.1+ds-2+b2) ... Setting up libpython3-dev:armhf (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:armhf (3.12.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.7-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling vcf/cparse.pyx because it changed. [1/1] Cythonizing vcf/cparse.pyx building 'vcf.cparse' extension creating build/temp.linux-armv7l-cpython-313/vcf arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-armv7l-cpython-313/vcf/cparse.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-313/vcf/cparse.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test running build_ext building 'vcf.cparse' extension creating build/temp.linux-armv7l-cpython-312/vcf arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c vcf/cparse.c -o build/temp.linux-armv7l-cpython-312/vcf/cparse.o arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/vcf/cparse.o -L/usr/lib/arm-linux-gnueabihf -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.cpython-312-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/vcf_melt -> build/scripts-3.12 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.12 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.12 changing mode of build/scripts-3.12/vcf_melt from 644 to 755 changing mode of build/scripts-3.12/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.12/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.1 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 5.95s ======================== I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.1 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 6.62s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.3.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__pycache__/test_vcf.cpython-312-pytest-8.3.3.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/filters.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/sample_filter.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/prof.py to prof.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/parser.py to parser.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/model.py to model.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/sample_filter.py to sample_filter.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/filters.py to filters.cpython-312.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.12/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.12/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:180: version: 6.20241024 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:166: skipping package python-pyvcf-examples (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:205: processing package python3-vcf... D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.12/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf D: dh_python3 depends:253: D={'python3:any', 'python3 (>= 3.12~)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_armhf.deb'. dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_armhf.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/409 and its subdirectories I: Current time: Thu Nov 28 08:41:21 -12 2024 I: pbuilder-time-stamp: 1732826481 Thu Nov 28 20:41:30 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64a-armhf-rb.debian.net. Thu Nov 28 20:41:30 UTC 2024 I: Preparing to do remote build '2' on virt64a-armhf-rb.debian.net. Thu Nov 28 20:48:11 UTC 2024 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. Thu Nov 28 20:48:14 UTC 2024 I: python-pyvcf_0.6.8+git20170215.476169c-11_armhf.changes: Format: 1.8 Date: Tue, 26 Nov 2024 21:49:45 +0530 Source: python-pyvcf Binary: python-pyvcf-examples python3-vcf python3-vcf-dbgsym pyvcf Architecture: all armhf Version: 0.6.8+git20170215.476169c-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Ananthu C V Description: python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python python3-vcf - Variant Call Format (VCF) parser for Python 3 pyvcf - helper scripts for Variant Call Format (VCF) parser Closes: 1079359 1083698 Changes: python-pyvcf (0.6.8+git20170215.476169c-11) unstable; urgency=medium . * Team upload. * Drop dependency on python3-pkg-resources (Closes: #1083698) * Fix patch header format * Use setuptools instead of deprecated distutils * Use raw strings to prevent invalid escape sequences in regex (Closes: 1079359) * Use execute_after target instead of overriding dh_install * Bump standards version to 4.7.0 (no changes needed) Checksums-Sha1: cf46b813f3bf375d0c44def30b6845fe88d599ba 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb c4569b3d724af4748c93ac0027b5af1c2bc880a8 8348 python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo 2172eab198cc4624a0a5008a0da30e95fedbe81a 262044 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_armhf.deb a7db4c810887e8d1d4974657450bafb0f2df7bbe 54724 python3-vcf_0.6.8+git20170215.476169c-11_armhf.deb a85188c781641d54421166e9461f0c72d4fd483f 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Checksums-Sha256: 32a3d99d82109541dc3d06bb38d70ed8c9bb442cdfb5803196c5d54a62f383b4 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 8b632ee571cba46665c2a3f53422699764005e216d7a321a70e464e0f7a6649c 8348 python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo ca89eba21d4c8ebc65c3c572d99ce94c6df05cc80bead721f6ff98e067d621bd 262044 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_armhf.deb 1aa34acb4fde2bf698ef9b87951672dc588fd742b34bbd87b9bfa23fcb1bafb2 54724 python3-vcf_0.6.8+git20170215.476169c-11_armhf.deb 844ebf522606305414f8f1e0e273c4edff2f04711ff1d50a31fca8c21fc95e60 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Files: fa5d6b8b108f02e304168b11669f483d 945160 python optional python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 5c960f7d79662e3cb0caa98362e45065 8348 python optional python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo 48f1ffb03eaea3681575412be117db6a 262044 debug optional python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_armhf.deb ee413c2944d2b5eee6d4f95f083e3d40 54724 python optional python3-vcf_0.6.8+git20170215.476169c-11_armhf.deb e5a5e5011a7e1a8594427d7a19330c9b 11468 python optional pyvcf_0.6.8+git20170215.476169c-11_all.deb Thu Nov 28 20:48:15 UTC 2024 I: diffoscope 283 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_34-12605.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TKhbDxPn/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TKhbDxPn/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TKhbDxPn/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TKhbDxPn/b1/python-pyvcf_0.6.8+git20170215.476169c-11_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.TKhbDxPn/b2/python-pyvcf_0.6.8+git20170215.476169c-11_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.370s) 0.370s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.030s) 0.030s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 713ms CPU time consumed: 714ms Thu Nov 28 21:16:42 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 28 21:16:42 UTC 2024 I: python-pyvcf from unstable built successfully and reproducibly on armhf. Thu Nov 28 21:16:45 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 28 21:16:45 UTC 2024 I: Submitting 12K b1/python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo.asc Thu Nov 28 21:17:15 UTC 2024 E: Could not submit buildinfo from b1 to http://buildinfo.debian.net/api/submit Thu Nov 28 21:17:15 UTC 2024 I: Submitting 12K b2/python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo.asc Thu Nov 28 21:17:45 UTC 2024 E: Could not submit buildinfo from b2 to http://buildinfo.debian.net/api/submit Thu Nov 28 21:17:45 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 28 21:17:45 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 28 21:17:45 UTC 2024 I: Removing signed python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo.asc files: removed './b1/python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo.asc' removed './b2/python-pyvcf_0.6.8+git20170215.476169c-11_armhf.buildinfo.asc'