Sat Oct 19 02:25:04 UTC 2024 I: starting to build python-ete3/unstable/armhf on jenkins on '2024-10-19 02:24' Sat Oct 19 02:25:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_6/10400/console.log Sat Oct 19 02:25:04 UTC 2024 I: Downloading source for unstable/python-ete3=3.1.3+dfsg-3 --2024-10-19 02:25:04-- http://deb.debian.org/debian/pool/main/p/python-ete3/python-ete3_3.1.3%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2394 (2.3K) [text/prs.lines.tag] Saving to: ‘python-ete3_3.1.3+dfsg-3.dsc’ 0K .. 100% 339M=0s 2024-10-19 02:25:04 (339 MB/s) - ‘python-ete3_3.1.3+dfsg-3.dsc’ saved [2394/2394] Sat Oct 19 02:25:04 UTC 2024 I: python-ete3_3.1.3+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-ete3 Binary: python3-ete3 Architecture: all Version: 3.1.3+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Alba Crespi , zhao feng Homepage: http://etetoolkit.org Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-ete3 Vcs-Git: https://salsa.debian.org/med-team/python-ete3.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-numpy, python3-lxml, python3-pyqt5.qtopengl, python3-pyqt5.qtsvg, python3-scipy, python3-six, python3-skbio, python3-pytest Package-List: python3-ete3 deb python optional arch=all Checksums-Sha1: 44bb2bbca09dc39f56dab710f4321cd300a72b0f 3100884 python-ete3_3.1.3+dfsg.orig.tar.xz 75bda8f2ca4f3d60f4a170576d6381f9d7931442 132916 python-ete3_3.1.3+dfsg-3.debian.tar.xz Checksums-Sha256: 3926abaf4d8fa6fdf671d54ef51208a0cb8d8fdc0c48e80c38c0920bad6b08a8 3100884 python-ete3_3.1.3+dfsg.orig.tar.xz b6277bc618961dd9fe49d64a36591488a42385b762138d787964c721cd069e99 132916 python-ete3_3.1.3+dfsg-3.debian.tar.xz Files: f88542390fb211975514d25d43dc3d76 3100884 python-ete3_3.1.3+dfsg.orig.tar.xz 0cc9fb7af1f7c3c570773c3d48becf01 132916 python-ete3_3.1.3+dfsg-3.debian.tar.xz Dgit: 9f4cdd8612140a597382020006b7008e48335570 debian archive/debian/3.1.3+dfsg-3 https://git.dgit.debian.org/python-ete3 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbu1PwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdr8mg/+KPxdebpunlFEEgYl9FXPQBAXkShF LWq/tpAPmE0x8o3udhWbIePK5QDKYVQ4hSqzJ/nnkhDFepMP4JChiNbqikhs7V9e wpnT5FcdEhxWmxZybQXvP7lZ0dyhvXJLewsH1cnB//Muii9ZvIe+XpW1S77synCq AZbtCUS5ZCjrAyAgWNkm4M/E0erxqiL4s/khvW8g35DWF+9BjSEd2UWAG/CtL7za RM5HX62H0XZEKyHkx0xzaLV37UbNi+BFuLCwWanHGICd2wyCtChyfzDDxsbIHzzG LhCTL7kko1ybyjgcQyJSnrWtdrn/g5Qb7KKd6FXljQ/4TxwBT5sax9hKR84lArB2 tlJHwljJRD0QsKaHTOHDLKyKMIlv3z1cLKxNaxdsFl/1hKaWRni4xGet4HFZ8kFA axppFkTgtPki5crB4fxV0qTDlXH2P/VUGg9gmKd+pP6zD721zjiKTxWoahpYs6hO TcRYset9e26dAHp8EBGmJdFhOZJeOe8TEzbMp2NWblcb9bfb/doBJFK+pObBxKOA VQUBv1sQJkaMvD4SG5GWEHr+YrvRbXFcV3xnClHRV5054PDgztUBWqJtHxMfQMRh gKo1YHYftiBiIy00MJfiz26iF1j1kwej+ZiUYe4/dW09RwKAcwVd6eRq47tC+hXy JVmiH5QXh6pB3nQ= =9Paz -----END PGP SIGNATURE----- Sat Oct 19 02:25:04 UTC 2024 I: Checking whether the package is not for us Sat Oct 19 02:25:04 UTC 2024 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Sat Oct 19 02:25:04 UTC 2024 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Sat Oct 19 02:25:48 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 18 14:25:13 -12 2024 I: pbuilder-time-stamp: 1729304713 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-ete3_3.1.3+dfsg-3.dsc] I: copying [./python-ete3_3.1.3+dfsg.orig.tar.xz] I: copying [./python-ete3_3.1.3+dfsg-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Sep 21 14:15:24 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-ete3_3.1.3+dfsg-3.dsc: no acceptable signature found dpkg-source: info: extracting python-ete3 in python-ete3-3.1.3+dfsg dpkg-source: info: unpacking python-ete3_3.1.3+dfsg.orig.tar.xz dpkg-source: info: unpacking python-ete3_3.1.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying syntax_fixes.patch dpkg-source: info: applying pmodeltest_executable.patch dpkg-source: info: applying python3.12.patch dpkg-source: info: applying python3.13.patch dpkg-source: info: applying fix-warnings.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11663/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='5ee381259fb44cdfb472f4be17e5cf5f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11663' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4AKCdZMz/pbuilderrc_zHTh --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4AKCdZMz/b1 --logfile b1/build.log python-ete3_3.1.3+dfsg-3.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64b 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/11663/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-numpy, python3-lxml, python3-pyqt5.qtopengl, python3-pyqt5.qtsvg, python3-scipy, python3-six, python3-skbio, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19665 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-lxml; however: Package python3-lxml is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtopengl; however: Package python3-pyqt5.qtopengl is not installed. pbuilder-satisfydepends-dummy depends on python3-pyqt5.qtsvg; however: Package python3-pyqt5.qtsvg is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libevdev2{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgfortran5{a} libglapi-mesa{a} libgles2{a} libglib2.0-0t64{a} libglvnd0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libice6{a} libicu72{a} libinput-bin{a} libinput10{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libnsl2{a} libpcre2-16-0{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5svg5{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libreadline8t64{a} libsensors-config{a} libsensors5{a} libsm6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-pyqt5.qtsvg{a} python3-pyqt5.sip{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tzdata{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus krb5-locales libarchive-cpio-perl libcups2 libglib2.0-data libltdl-dev libmail-sendmail-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds lynx python3-bs4 python3-cssselect python3-html5lib python3-pil python3-pygments qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 425 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: python3-skbio which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcups2t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libelf1t64{a} libevdev2{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgbm1{a} libgfortran5{a} libglapi-mesa{a} libgles2{a} libglib2.0-0t64{a} libglvnd0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libice6{a} libicu72{a} libinput-bin{a} libinput10{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libnsl2{a} libpcre2-16-0{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5svg5{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libreadline8t64{a} libsensors-config{a} libsensors5{a} libsm6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libz3-4{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-decorator{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyqt5{a} python3-pyqt5.qtopengl{a} python3-pyqt5.qtsvg{a} python3-pyqt5.sip{a} python3-pytest{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tzdata{a} x11-common{a} xkb-data{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus krb5-locales libarchive-cpio-perl libcups2 libglib2.0-data libltdl-dev libmail-sendmail-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds lynx python3-bs4 python3-cssselect python3-html5lib python3-pil python3-pygments qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 0 packages upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After unpacking 425 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11663 and its subdirectories Sat Oct 19 02:25:51 UTC 2024 W: No second build log, what happened? Sat Oct 19 02:25:51 UTC 2024 W: Downloading the build dependencies failed Sat Oct 19 02:25:51 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat Oct 19 02:25:51 UTC 2024 W: Network problems are automatically rescheduled after some hours.