Thu Mar 6 07:49:27 UTC 2025 I: starting to build python-bioframe/unstable/armhf on jenkins on '2025-03-06 07:48'
Thu Mar 6 07:49:27 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_3/14075/console.log
Thu Mar 6 07:49:27 UTC 2025 I: Downloading source for unstable/python-bioframe=0.4.1-2
--2025-03-06 07:49:27-- http://deb.debian.org/debian/pool/main/p/python-bioframe/python-bioframe_0.4.1-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2253 (2.2K) [text/prs.lines.tag]
Saving to: ‘python-bioframe_0.4.1-2.dsc’
0K .. 100% 355M=0s
2025-03-06 07:49:27 (355 MB/s) - ‘python-bioframe_0.4.1-2.dsc’ saved [2253/2253]
Thu Mar 6 07:49:27 UTC 2025 I: python-bioframe_0.4.1-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-bioframe
Binary: python3-bioframe
Architecture: all
Version: 0.4.1-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <nilesh@debian.org>,
Homepage: https://github.com/open2c/bioframe
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-bioframe
Vcs-Git: https://salsa.debian.org/med-team/python-bioframe.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-all, python3-pytest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest <!nocheck>, python3-requests, python3-setuptools, python3-wheel
Package-List:
python3-bioframe deb science optional arch=all
Checksums-Sha1:
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3b9cf25076d094f060ea7f359c8e27c0c48d2fad 3576 python-bioframe_0.4.1-2.debian.tar.xz
Checksums-Sha256:
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b292d3b1884da8a8efab3bfae62e2551e9dff1316294c26628151a1e714557d3 3576 python-bioframe_0.4.1-2.debian.tar.xz
Files:
55755babf1289bb7bdd5538e2bcced10 815763 python-bioframe_0.4.1.orig.tar.gz
5b106202d21444da3d759f854cfc95c2 3576 python-bioframe_0.4.1-2.debian.tar.xz
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Thu Mar 6 07:49:27 UTC 2025 I: Checking whether the package is not for us
Thu Mar 6 07:49:27 UTC 2025 I: Starting 1st build on remote node ff4a-armhf-rb.debian.net.
Thu Mar 6 07:49:27 UTC 2025 I: Preparing to do remote build '1' on ff4a-armhf-rb.debian.net.
Thu Mar 6 07:53:45 UTC 2025 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Mar 5 19:49:34 -12 2025
I: pbuilder-time-stamp: 1741247374
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-bioframe_0.4.1-2.dsc]
I: copying [./python-bioframe_0.4.1.orig.tar.gz]
I: copying [./python-bioframe_0.4.1-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./python-bioframe_0.4.1-2.dsc: unsupported subcommand
dpkg-source: info: extracting python-bioframe in python-bioframe-0.4.1
dpkg-source: info: unpacking python-bioframe_0.4.1.orig.tar.gz
dpkg-source: info: unpacking python-bioframe_0.4.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 32-bits.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/7150/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='armhf'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 '
DISTRIBUTION='unstable'
HOME='/root'
HOST_ARCH='armhf'
IFS='
'
INVOCATION_ID='6edf6af138ad4bf68ed0459ebae2ef1c'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='7150'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/pbuilderrc_Mpes --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/b1 --logfile b1/build.log python-bioframe_0.4.1-2.dsc'
SUDO_GID='113'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://10.0.0.15:3142/'
I: uname -a
Linux ff4a 6.1.0-31-armmp-lpae #1 SMP Debian 6.1.128-1 (2025-02-07) armv7l GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/7150/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: armhf
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-matplotlib, python3-numpy, python3-pandas, python3-pytest, python3-requests, python3-setuptools, python3-wheel
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19508 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
Package dh-sequence-python3 is not installed.
pbuilder-satisfydepends-dummy depends on python3-all; however:
Package python3-all is not installed.
pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
Package python3-matplotlib is not installed.
pbuilder-satisfydepends-dummy depends on python3-numpy; however:
Package python3-numpy is not installed.
pbuilder-satisfydepends-dummy depends on python3-pandas; however:
Package python3-pandas is not installed.
pbuilder-satisfydepends-dummy depends on python3-pytest; however:
Package python3-pytest is not installed.
pbuilder-satisfydepends-dummy depends on python3-requests; however:
Package python3-requests is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-wheel; however:
Package python3-wheel is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyparsing{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a}
The following packages are RECOMMENDED but will NOT be installed:
curl isympy-common javascript-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pygments python3-tables shared-mime-info wget xdg-user-dirs
0 packages upgraded, 149 newly installed, 0 to remove and 0 not upgraded.
Need to get 113 MB of archives. After unpacking 420 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.13-minimal armhf 3.13.2-1 [845 kB]
Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB]
Get: 3 http://deb.debian.org/debian unstable/main armhf python3.13-minimal armhf 3.13.2-1 [1842 kB]
Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.13.2-2 [27.1 kB]
Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 12.0.0 [28.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian unstable/main armhf libffi8 armhf 3.4.7-1 [20.3 kB]
Get: 9 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-6 [146 kB]
Get: 11 http://deb.debian.org/debian unstable/main armhf libpython3.13-stdlib armhf 3.13.2-1 [1853 kB]
Get: 12 http://deb.debian.org/debian unstable/main armhf python3.13 armhf 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.13.2-2 [10.1 kB]
Get: 14 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.13.2-2 [28.1 kB]
Get: 15 http://deb.debian.org/debian unstable/main armhf python3-numpy-dev armhf 1:2.2.3+ds-4 [133 kB]
Get: 16 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.1-2 [116 kB]
Get: 17 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-17 [263 kB]
Get: 18 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.1-2 [1835 kB]
Get: 19 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:2.2.3+ds-4 [3477 kB]
Get: 20 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB]
Get: 21 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.4.1-1 [1393 kB]
Get: 22 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20241223 [164 kB]
Get: 23 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB]
Get: 24 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB]
Get: 25 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB]
Get: 26 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.23.1-1 [238 kB]
Get: 27 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB]
Get: 28 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-7 [1095 kB]
Get: 29 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.4-5 [84.9 kB]
Get: 30 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB]
Get: 31 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB]
Get: 32 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-7 [272 kB]
Get: 33 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB]
Get: 34 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get: 35 http://deb.debian.org/debian unstable/main armhf automake all 1:1.17-3 [862 kB]
Get: 36 http://deb.debian.org/debian unstable/main armhf autopoint all 0.23.1-1 [770 kB]
Get: 37 http://deb.debian.org/debian unstable/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [934 kB]
Get: 38 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b7 [284 kB]
Get: 39 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.47-1 [264 kB]
Get: 40 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB]
Get: 41 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 42 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get: 43 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-2 [317 kB]
Get: 44 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-2 [371 kB]
Get: 45 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB]
Get: 46 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB]
Get: 47 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB]
Get: 48 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.10-2 [337 kB]
Get: 49 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.10-2 [750 kB]
Get: 50 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b4 [25.0 kB]
Get: 51 http://deb.debian.org/debian unstable/main armhf libxft2 armhf 2.3.6-1+b4 [46.4 kB]
Get: 52 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b3 [45.2 kB]
Get: 53 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+24 [217 kB]
Get: 54 http://deb.debian.org/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b3 [16.4 kB]
Get: 55 http://deb.debian.org/debian unstable/main armhf libtk8.6 armhf 8.6.16-1 [698 kB]
Get: 56 http://deb.debian.org/debian unstable/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-8 [483 kB]
Get: 57 http://deb.debian.org/debian unstable/main armhf blt armhf 2.5.3+dfsg-8 [5984 B]
Get: 58 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 59 http://deb.debian.org/debian unstable/main armhf libtool all 2.5.4-4 [539 kB]
Get: 60 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB]
Get: 61 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get: 62 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 63 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 64 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB]
Get: 65 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB]
Get: 66 http://deb.debian.org/debian unstable/main armhf libunistring5 armhf 1.3-1 [444 kB]
Get: 67 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-6 [9086 kB]
Get: 68 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b2 [605 kB]
Get: 69 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.23.1-1 [1560 kB]
Get: 70 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 71 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get: 72 http://deb.debian.org/debian unstable/main armhf debhelper all 13.24.1 [920 kB]
Get: 73 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 74 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 75 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 76 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.4.2-1 [37.3 kB]
Get: 77 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB]
Get: 78 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.1-1 [8276 B]
Get: 79 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 80 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 75.8.0-1 [222 kB]
Get: 81 http://deb.debian.org/debian unstable/main armhf python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 82 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.21.0-1 [10.6 kB]
Get: 83 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 75.8.0-1 [724 kB]
Get: 84 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20250108 [113 kB]
Get: 85 http://deb.debian.org/debian unstable/main armhf fonts-lyx all 2.4.3-1 [190 kB]
Get: 86 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.23-1+b1 [36.7 kB]
Get: 87 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB]
Get: 88 http://deb.debian.org/debian unstable/main armhf libgpg-error0 armhf 1.51-3 [71.9 kB]
Get: 89 http://deb.debian.org/debian unstable/main armhf libgcrypt20 armhf 1.11.0-7 [727 kB]
Get: 90 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.83.5-1 [1339 kB]
Get: 91 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB]
Get: 92 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 10.2.0-1 [419 kB]
Get: 93 http://deb.debian.org/debian unstable/main armhf libimagequant0 armhf 2.18.0-1+b2 [30.5 kB]
Get: 94 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB]
Get: 95 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3.1 [145 kB]
Get: 96 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 97 http://deb.debian.org/debian unstable/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 98 http://deb.debian.org/debian unstable/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b2 [25.6 kB]
Get: 99 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.16-2 [131 kB]
Get: 100 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB]
Get: 101 http://deb.debian.org/debian unstable/main armhf libopenjp2-7 armhf 2.5.3-1 [184 kB]
Get: 102 http://deb.debian.org/debian unstable/main armhf libqhull-r8.0 armhf 2020.2-6+b2 [220 kB]
Get: 103 http://deb.debian.org/debian unstable/main armhf libraqm0 armhf 0.10.2-1 [11.6 kB]
Get: 104 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.5.0-0.1 [114 kB]
Get: 105 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.5.0-0.1 [273 kB]
Get: 106 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-5 [302 kB]
Get: 107 http://deb.debian.org/debian unstable/main armhf libwebpdemux2 armhf 1.5.0-0.1 [112 kB]
Get: 108 http://deb.debian.org/debian unstable/main armhf libwebpmux3 armhf 1.5.0-0.1 [123 kB]
Get: 109 http://deb.debian.org/debian unstable/main armhf libxslt1.1 armhf 1.1.35-1.1+b1 [212 kB]
Get: 110 http://deb.debian.org/debian unstable/main armhf python-matplotlib-data all 3.8.3-7 [2735 kB]
Get: 111 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.13.2-2 [1044 B]
Get: 112 http://deb.debian.org/debian unstable/main armhf python3-attr all 25.1.0-1 [68.7 kB]
Get: 113 http://deb.debian.org/debian unstable/main armhf python3-brotli armhf 1.1.0-2+b7 [293 kB]
Get: 114 http://deb.debian.org/debian unstable/main armhf python3-certifi all 2025.1.31+ds-1 [9652 B]
Get: 115 http://deb.debian.org/debian unstable/main armhf python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 116 http://deb.debian.org/debian unstable/main armhf python3-charset-normalizer armhf 3.4.1-1+b1 [118 kB]
Get: 117 http://deb.debian.org/debian unstable/main armhf python3-contourpy armhf 1.3.1-1+b1 [181 kB]
Get: 118 http://deb.debian.org/debian unstable/main armhf python3-cycler all 0.12.1-1 [9496 B]
Get: 119 http://deb.debian.org/debian unstable/main armhf python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 120 http://deb.debian.org/debian unstable/main armhf python3-decorator all 5.1.1-5 [15.1 kB]
Get: 121 http://deb.debian.org/debian unstable/main armhf python3-platformdirs all 4.3.6-1 [16.6 kB]
Get: 122 http://deb.debian.org/debian unstable/main armhf python3-fs all 2.4.16-7 [95.2 kB]
Get: 123 http://deb.debian.org/debian unstable/main armhf python3-lxml armhf 5.3.1-1+b1 [1192 kB]
Get: 124 http://deb.debian.org/debian unstable/main armhf python3-lz4 armhf 4.4.0+dfsg-1+b1 [24.1 kB]
Get: 125 http://deb.debian.org/debian unstable/main armhf python3-scipy armhf 1.14.1-4+b1 [15.5 MB]
Get: 126 http://deb.debian.org/debian unstable/main armhf python3-mpmath all 1.3.0-1 [419 kB]
Get: 127 http://deb.debian.org/debian unstable/main armhf python3-sympy all 1.13.3-5 [4148 kB]
Get: 128 http://deb.debian.org/debian unstable/main armhf python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB]
Get: 129 http://deb.debian.org/debian unstable/main armhf unicode-data all 15.1.0-1 [8547 kB]
Get: 130 http://deb.debian.org/debian unstable/main armhf python3-fonttools armhf 4.55.3-2+b1 [1393 kB]
Get: 131 http://deb.debian.org/debian unstable/main armhf python3-idna all 3.10-1 [42.0 kB]
Get: 132 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B]
Get: 133 http://deb.debian.org/debian unstable/main armhf python3-kiwisolver armhf 1.4.7-3+b1 [54.7 kB]
Get: 134 http://deb.debian.org/debian unstable/main armhf python3-pil armhf 11.1.0-5+b1 [481 kB]
Get: 135 http://deb.debian.org/debian unstable/main armhf python3.13-tk armhf 3.13.2-1 [100 kB]
Get: 136 http://deb.debian.org/debian unstable/main armhf python3-tk armhf 3.13.2-1 [9516 B]
Get: 137 http://deb.debian.org/debian unstable/main armhf python3-pil.imagetk armhf 11.1.0-5+b1 [81.2 kB]
Get: 138 http://deb.debian.org/debian unstable/main armhf python3-pyparsing all 3.1.2-1 [146 kB]
Get: 139 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.2-1 [55.3 kB]
Get: 140 http://deb.debian.org/debian unstable/main armhf python3-matplotlib armhf 3.8.3-7+b1 [22.9 MB]
Get: 141 http://deb.debian.org/debian unstable/main armhf python3-pytz all 2025.1-3 [150 kB]
Get: 142 http://deb.debian.org/debian unstable/main armhf python3-tz all 2025.1-3 [4004 B]
Get: 143 http://deb.debian.org/debian unstable/main armhf python3-pandas-lib armhf 2.2.3+dfsg-8+b1 [4141 kB]
Get: 144 http://deb.debian.org/debian unstable/main armhf python3-pandas all 2.2.3+dfsg-8 [3097 kB]
Get: 145 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 146 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.4-1 [250 kB]
Get: 147 http://deb.debian.org/debian unstable/main armhf python3-urllib3 all 2.3.0-1 [114 kB]
Get: 148 http://deb.debian.org/debian unstable/main armhf python3-requests all 2.32.3+dfsg-4 [72.1 kB]
Get: 149 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.45.1-1 [56.7 kB]
Fetched 113 MB in 7s (17.2 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:armhf.
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Setting up libpython3.13-minimal:armhf (3.13.2-1) ...
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Unpacking readline-common (8.2-6) ...
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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:armhf (8.2-6) ...
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Setting up python3-minimal (3.13.2-2) ...
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Preparing to unpack .../000-python3_3.13.2-2_armhf.deb ...
Unpacking python3 (3.13.2-2) ...
Selecting previously unselected package python3-numpy-dev:armhf.
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Unpacking libblas3:armhf (3.12.1-2) ...
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invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
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Setting up tzdata (2025a-2) ...
Current default time zone: 'Etc/UTC'
Local time is now: Thu Mar 6 07:51:11 UTC 2025.
Universal Time is now: Thu Mar 6 07:51:11 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up netbase (6.4) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
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Setting up automake (1:1.17-3) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.23.1-1) ...
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Setting up intltool-debian (0.35.0+20060710.6) ...
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Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libglib2.0-0t64:armhf (2.83.5-1) ...
No schema files found: doing nothing.
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Setting up libpython3.13-stdlib:armhf (3.13.2-1) ...
Setting up libpython3-stdlib:armhf (3.13.2-2) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.4-1+b2) ...
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Setting up python3.13 (3.13.2-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
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Setting up python3 (3.13.2-2) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-platformdirs (4.3.6-1) ...
Setting up python3-fs (2.4.16-7) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-packaging (24.2-1) ...
Setting up python3-chardet (5.2.0+dfsg-2) ...
Setting up python3-pyparsing (3.1.2-1) ...
Setting up python3-certifi (2025.1.31+ds-1) ...
Setting up python3-brotli (1.1.0-2+b7) ...
Setting up libraqm0:armhf (0.10.2-1) ...
Setting up python3-cycler (0.12.1-1) ...
Setting up python3-kiwisolver (1.4.7-3+b1) ...
Setting up python3-idna (3.10-1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-numpy (1:2.2.3+ds-4) ...
Setting up python3-urllib3 (2.3.0-1) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up python3-lxml:armhf (5.3.1-1+b1) ...
Setting up python3-dateutil (2.9.0-3) ...
Setting up python3-contourpy (1.3.1-1+b1) ...
Setting up python3-mpmath (1.3.0-1) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.13.3-5) ...
Setting up python3-attr (25.1.0-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ...
Setting up python3-scipy (1.14.1-4+b1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.1-1) ...
Setting up python3-lz4 (4.4.0+dfsg-1+b1) ...
Setting up python3-charset-normalizer (3.4.1-1+b1) ...
Setting up python3-pytest (8.3.4-1) ...
Setting up blt (2.5.3+dfsg-8) ...
Setting up python3-pandas-lib:armhf (2.2.3+dfsg-8+b1) ...
Setting up python3-typeguard (4.4.2-1) ...
Setting up python3-all (3.13.2-2) ...
Setting up python3-tk:armhf (3.13.2-1) ...
Setting up debhelper (13.24.1) ...
Setting up python3-pytz (2025.1-3) ...
Setting up python3-tz (2025.1-3) ...
Setting up python3-pil:armhf (11.1.0-5+b1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-pandas (2.2.3+dfsg-8) ...
Setting up python3-pil.imagetk:armhf (11.1.0-5+b1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-requests (2.32.3+dfsg-4) ...
Setting up python3-pkg-resources (75.8.0-1) ...
Setting up python3-setuptools (75.8.0-1) ...
Setting up dh-python (6.20250108) ...
Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
Setting up python3-fonttools (4.55.3-2+b1) ...
Setting up python3-matplotlib (3.8.3-7+b1) ...
Processing triggers for libc-bin (2.41-3) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-bioframe-0.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-bioframe_0.4.1-2_source.changes
dpkg-buildpackage: info: source package python-bioframe
dpkg-buildpackage: info: source version 0.4.1-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Alexandre Detiste <tchet@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running clean
removing '/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running build
running build_py
creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe
copying bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe
copying bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe
copying bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe
copying bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe
copying bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe
creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io
copying bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io
copying bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io
copying bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io
copying bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io
creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core
copying bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core
copying bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core
copying bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core
copying bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core
copying bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core
copying bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core
creating /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
copying bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/python-bioframe-0.4.1
plugins: typeguard-4.4.2
collected 50 items
tests/test_core_checks.py ........ [ 16%]
tests/test_core_construction.py .... [ 24%]
tests/test_core_specs.py ..... [ 34%]
tests/test_core_stringops.py .... [ 42%]
tests/test_extras.py ..sss.. [ 56%]
tests/test_io.py .. [ 60%]
tests/test_ops.py ............. [ 86%]
tests/test_ops_select.py ....... [100%]
=============================== warnings summary ===============================
bioframe/io/resources.py:13
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/resources.py:13: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
tests/test_io.py:23
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:23: SyntaxWarning: invalid escape sequence '\s'
assert bioframe.read_table(StringIO(d), schema="bed3", sep="\s+").shape == (3, 3)
tests/test_io.py:24
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:24: SyntaxWarning: invalid escape sequence '\s'
assert bioframe.read_table(StringIO(d), schema="bed6", sep="\s+").shape == (3, 6)
tests/test_io.py:25
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:25: SyntaxWarning: invalid escape sequence '\s'
assert bioframe.read_table(StringIO(d), schema="bed12", sep="\s+").shape == (3, 12)
tests/test_io.py:33
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_io.py:33: SyntaxWarning: invalid escape sequence '\s'
StringIO(d), schema="bedpe", sep="\s+", schema_is_strict=True
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 84 warnings
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py: 28 warnings
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_specs.py: 12 warnings
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_extras.py: 24 warnings
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 326 warnings
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/specs.py:150: DeprecationWarning: is_categorical_dtype is deprecated and will be removed in a future version. Use isinstance(dtype, pd.CategoricalDtype) instead
pd.api.types.is_categorical_dtype(chrom_dtype),
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 4 warnings
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 6 warnings
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py:1550: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
df_trimmed[sk].clip(lower=lower_vector, upper=upper_vector, inplace=True)
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_checks.py: 4 warnings
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py: 6 warnings
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py:1551: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
df_trimmed[ek].clip(lower=lower_vector, upper=upper_vector, inplace=True)
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py::test_any
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method.
The behavior will change in pandas 3.0. This inplace method will never work because the intermediate object on which we are setting values always behaves as a copy.
For example, when doing 'df[col].method(value, inplace=True)', try using 'df.method({col: value}, inplace=True)' or df[col] = df[col].method(value) instead, to perform the operation inplace on the original object.
out_df[sk1].fillna(0, inplace=True)
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_core_construction.py::test_any
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py:154: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
out_df[sk1].fillna(0, inplace=True)
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_trim
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:210: FutureWarning: Mismatched null-like values <NA> and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise.
pd.testing.assert_frame_equal(
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_overlap
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:442: DeprecationWarning: Bitwise inversion '~' on bool is deprecated and will be removed in Python 3.16. This returns the bitwise inversion of the underlying int object and is usually not what you expect from negating a bool. Use the 'not' operator for boolean negation or ~int(x) if you really want the bitwise inversion of the underlying int.
assert ~df1.equals(
.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py::test_assign_view
/build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/tests/test_ops.py:1632: FutureWarning: Mismatched null-like values <NA> and None found. In a future version, pandas equality-testing functions (e.g. assert_frame_equal) will consider these not-matching and raise.
pd.testing.assert_frame_equal(
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
================= 47 passed, 3 skipped, 504 warnings in 13.97s =================
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-bioframe/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require'
warnings.warn(msg)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running install_lib
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/ops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/schemas.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/fileops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/resources.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/fileops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/resources.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/__pycache__/schemas.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__pycache__
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/hg38.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/wuhCor1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/danRer10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/hg19.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/ce11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/sacCer3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.0.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm39.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/t2t-chm13-v1.1.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/dm3.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/dm6.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/ce10.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/danRer11.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/GRCh37.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/io/data/mm9.seqinfo.tsv -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/data
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/vis.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/extras.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/ops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/vis.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/__pycache__/extras.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__pycache__
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/stringops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__init__.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/specs.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/checks.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/construction.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core
creating /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/specs.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/construction.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/stringops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/arrops.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/__pycache__/checks.cpython-313.pyc -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__pycache__
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/core/arrops.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core
copying /build/reproducible-path/python-bioframe-0.4.1/.pybuild/cpython3_3.13_python-bioframe/build/bioframe/_version.py -> /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/ops.py to ops.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/schemas.py to schemas.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/fileops.py to fileops.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/io/resources.py to resources.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/vis.py to vis.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/extras.py to extras.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/stringops.py to stringops.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/specs.py to specs.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/checks.py to checks.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/construction.py to construction.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/core/arrops.py to arrops.cpython-313.pyc
byte-compiling /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe/_version.py to _version.cpython-313.pyc
running install_egg_info
running egg_info
creating bioframe.egg-info
writing bioframe.egg-info/PKG-INFO
writing dependency_links to bioframe.egg-info/dependency_links.txt
writing requirements to bioframe.egg-info/requires.txt
writing top-level names to bioframe.egg-info/top_level.txt
writing manifest file 'bioframe.egg-info/SOURCES.txt'
reading manifest file 'bioframe.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '__pycache__/*' found anywhere in distribution
warning: no previously-included files matching '*.so' found anywhere in distribution
warning: no previously-included files matching '*.pyd' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
warning: no previously-included files matching '.git*' found anywhere in distribution
warning: no previously-included files matching '.deps/*' found anywhere in distribution
warning: no previously-included files matching '.DS_Store' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'bioframe.egg-info/SOURCES.txt'
Copying bioframe.egg-info to /build/reproducible-path/python-bioframe-0.4.1/debian/python3-bioframe/usr/lib/python3.13/dist-packages/bioframe-0.4.1.egg-info
Skipping SOURCES.txt
running install_scripts
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_python3 -O--buildsystem=pybuild
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
dh_fixperms -O--buildsystem=pybuild
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dpkg-gencontrol: warning: Depends field of package python3-bioframe: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-bioframe' in '../python3-bioframe_0.4.1-2_all.deb'.
dpkg-genbuildinfo --build=binary -O../python-bioframe_0.4.1-2_armhf.buildinfo
dpkg-genchanges --build=binary -O../python-bioframe_0.4.1-2_armhf.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/7150 and its subdirectories
I: Current time: Wed Mar 5 19:53:40 -12 2025
I: pbuilder-time-stamp: 1741247620
Thu Mar 6 07:53:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net.
Thu Mar 6 07:53:47 UTC 2025 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net.
Thu Mar 6 07:56:23 UTC 2025 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net.
Thu Mar 6 07:56:25 UTC 2025 I: python-bioframe_0.4.1-2_armhf.changes:
Format: 1.8
Date: Sat, 15 Feb 2025 20:11:30 +0100
Source: python-bioframe
Binary: python3-bioframe
Architecture: all
Version: 0.4.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Alexandre Detiste <tchet@debian.org>
Description:
python3-bioframe - library to enable flexible, scalable operations on genomic interv
Changes:
python-bioframe (0.4.1-2) unstable; urgency=medium
.
* Team Upload
* Reformat d/control with debputy
* Add a runtime dep on python3-pkg-resources
* Use dh-sequence-python3
* Bump Standards-Version to 4.7.0
Checksums-Sha1:
ca6ce7d10eb09aedde4f61fafa924a4a9b8a6645 8200 python-bioframe_0.4.1-2_armhf.buildinfo
2ad275b943898f6e4dfcc44efb31e89c3a2907cf 71964 python3-bioframe_0.4.1-2_all.deb
Checksums-Sha256:
b0fbfa4dc18861c53818639a73373bf71717f01fd8092ec4fded14327272dc70 8200 python-bioframe_0.4.1-2_armhf.buildinfo
f2593b33515d4ea9e4632bc21277ae4af826a400c784da50627e7641da974d66 71964 python3-bioframe_0.4.1-2_all.deb
Files:
1d98438d6ef2875e2b98846f5dd1b418 8200 science optional python-bioframe_0.4.1-2_armhf.buildinfo
05a2d4934ab79fe22fbd9472b2207c0e 71964 science optional python3-bioframe_0.4.1-2_all.deb
Thu Mar 6 07:56:26 UTC 2025 I: diffoscope 289 will be used to compare the two builds:
Running as unit: rb-diffoscope-armhf_3-14075.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/python-bioframe_0.4.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/python-bioframe_0.4.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/python-bioframe_0.4.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/b1/python-bioframe_0.4.1-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.GlUP4HIC/b2/python-bioframe_0.4.1-2_armhf.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call diffoscope.comparators.binary.FilesystemFile
## main (total time: 0.003s)
0.003s 2 calls outputs
0.000s 1 call cleanup
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 282ms
CPU time consumed: 283ms
Thu Mar 6 07:56:27 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists.
Thu Mar 6 07:56:27 UTC 2025 I: python-bioframe from unstable built successfully and reproducibly on armhf.
Thu Mar 6 07:56:28 UTC 2025 I: Submitting .buildinfo files to external archives:
Thu Mar 6 07:56:28 UTC 2025 I: Submitting 12K b1/python-bioframe_0.4.1-2_armhf.buildinfo.asc
Thu Mar 6 07:56:29 UTC 2025 I: Submitting 12K b2/python-bioframe_0.4.1-2_armhf.buildinfo.asc
Thu Mar 6 07:56:32 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Thu Mar 6 07:56:32 UTC 2025 I: Done submitting .buildinfo files.
Thu Mar 6 07:56:32 UTC 2025 I: Removing signed python-bioframe_0.4.1-2_armhf.buildinfo.asc files:
removed './b1/python-bioframe_0.4.1-2_armhf.buildinfo.asc'
removed './b2/python-bioframe_0.4.1-2_armhf.buildinfo.asc'