Sat Dec 14 08:43:00 UTC 2024 I: starting to build parmed/unstable/armhf on jenkins on '2024-12-14 08:42' Sat Dec 14 08:43:00 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_29/14345/console.log Sat Dec 14 08:43:00 UTC 2024 I: Downloading source for unstable/parmed=4.3.0+dfsg-2 --2024-12-14 08:43:00-- http://deb.debian.org/debian/pool/main/p/parmed/parmed_4.3.0%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2352 (2.3K) [text/prs.lines.tag] Saving to: ‘parmed_4.3.0+dfsg-2.dsc’ 0K .. 100% 330M=0s 2024-12-14 08:43:00 (330 MB/s) - ‘parmed_4.3.0+dfsg-2.dsc’ saved [2352/2352] Sat Dec 14 08:43:00 UTC 2024 I: parmed_4.3.0+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: parmed Binary: python3-parmed Architecture: any Version: 4.3.0+dfsg-2 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://parmed.github.io/ParmEd/html/index.html Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/debichem-team/parmed Vcs-Git: https://salsa.debian.org/debichem-team/parmed.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-python, gromacs , gromacs-data , libopenmm-plugins , moreutils, python3-dev, python3-lxml , python3-networkx , python3-numpy , python3-openmm , python3-pandas , python3-pytest , python3-rdkit , python3-setuptools, python3-versioneer Package-List: python3-parmed deb science optional arch=any Checksums-Sha1: 23c359da1ed15292cccae178c4418c65f1f941ac 48452764 parmed_4.3.0+dfsg.orig.tar.xz c184dd925f21f77d98f0e5ba005deab0397f6843 7288 parmed_4.3.0+dfsg-2.debian.tar.xz Checksums-Sha256: 822f1ea346683f816e2a03780fed2dc4b3d1c1362698bd14458ae871968886fb 48452764 parmed_4.3.0+dfsg.orig.tar.xz c37130034199917fd34431d9503297e3150143f8cce20020374017732e8732d3 7288 parmed_4.3.0+dfsg-2.debian.tar.xz Files: 237d0c277092e38f9b3818aa3eeb6fd6 48452764 parmed_4.3.0+dfsg.orig.tar.xz 1e17fae8592756ddb9d9d3682d91eb6e 7288 parmed_4.3.0+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmdERiwSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKH+KsP/j8rG02BeEwKrZ/9bEtvLsYqsTfVypfO lqYzH34fhNSzYGmLgV/OFJmG1EEztam9fPBal7W9kOOa5ex5bBDxj6J+FrY3NXHD f1NuVL0ptGWBmn5hXKsQKmLWjuuxwp7pby8pHMTEBwKY0XlJ3nb4aFWebYiqQxJf plz2XUMMnmPX1w69Oyf74GaI8NH8SJtL4z4YG57QJZpoHJeoA/A4OAxvzZov7ofI GbcesmMODOI6wcn+5MYLG41t68MKDIVSR2g6pOQTX5rWdpPzYU64XbzeIreAQMtP a4wNpKHLPiULjgs7AbcEdCxung9imHtDjyR5yEZXGEstd1xqTPue/JGu0V5cUZOm XFAgn5PyoQ0gkDNkedSf06xqqdZyHknrl1rssrUvkO3dFDpWZCRUAM8WVPI3XMU9 BqEOW1H9ez3I1K4dmHd+5w9C+33hgSKjU5iShnSN5jcf271mDBKBTa1E1TMY+nbR ZrFx8M+4cC5i/LjL6o7EBsyy82ehQJQv/KFhQs2X8xSeOPJwf18u86vqMSz0EAjO 1XImYXdwiZIsSf+VAk6hRLahZ4GtG2lePiUJqe8lSYbSpopr1Zw/Fo2NtTM7dYfl 8q/ws2UtsepUUUepoB5Wn/LtAii5C/nvbWd0GIn6ym/1hXuS5Bqc/TODGQd8T+hM ZVAyoJzmBJgu =MKiw -----END PGP SIGNATURE----- Sat Dec 14 08:43:00 UTC 2024 I: Checking whether the package is not for us Sat Dec 14 08:43:00 UTC 2024 I: Starting 1st build on remote node virt32z-armhf-rb.debian.net. Sat Dec 14 08:43:00 UTC 2024 I: Preparing to do remote build '1' on virt32z-armhf-rb.debian.net. Sat Dec 14 08:44:23 UTC 2024 I: Deleting $TMPDIR on virt32z-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 13 20:43:27 -12 2024 I: pbuilder-time-stamp: 1734165807 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [parmed_4.3.0+dfsg-2.dsc] I: copying [./parmed_4.3.0+dfsg.orig.tar.xz] I: copying [./parmed_4.3.0+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Nov 25 09:41:00 2024 gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./parmed_4.3.0+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting parmed in parmed-4.3.0+dfsg dpkg-source: info: unpacking parmed_4.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking parmed_4.3.0+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-network-tests.patch dpkg-source: info: applying periodicity-must-be-positive.patch dpkg-source: info: applying skip-tests-after-file-removal.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/19013/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7bdedca281b545aa859b9c7e55643bbf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='19013' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5eX2H8YL/pbuilderrc_EPR1 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5eX2H8YL/b1 --logfile b1/build.log parmed_4.3.0+dfsg-2.dsc' SUDO_GID='110' SUDO_UID='103' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32z 6.1.0-28-armmp-lpae #1 SMP Debian 6.1.119-1 (2024-11-22) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/19013/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, gromacs, gromacs-data, libopenmm-plugins, moreutils, python3-dev, python3-lxml, python3-networkx, python3-numpy, python3-openmm, python3-pandas, python3-pytest, python3-rdkit, python3-setuptools, python3-versioneer dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19680 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on gromacs; however: Package gromacs is not installed. pbuilder-satisfydepends-dummy depends on gromacs-data; however: Package gromacs-data is not installed. pbuilder-satisfydepends-dummy depends on libopenmm-plugins; however: Package libopenmm-plugins is not installed. pbuilder-satisfydepends-dummy depends on moreutils; however: Package moreutils is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-lxml; however: Package python3-lxml is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-openmm; however: Package python3-openmm is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-rdkit; however: Package python3-rdkit is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-versioneer; however: Package python3-versioneer is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-freefont-ttf{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} gromacs-data{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-numpy1.83.0{a} libboost-python1.83.0{a} libboost-serialization1.83.0{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcoordgen3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libinchi1.07{a} libio-pty-perl{a} libipc-run-perl{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenmm-dev{a} libopenmm-plugins{a} libopenmm8.1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} librdkit1t64{a} libreadline8t64{a} libtime-duration-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libxslt1.1{a} m4{a} man-db{a} media-types{a} moreutils{a} netbase{a} ocl-icd-libopencl1{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dateutil{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-openmm{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-rdkit{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-versioneer{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} rdkit-data{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-gdal python3-html5lib python3-jinja2 python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pydot python3-pygments python3-pygraphviz python3-scipy python3-tables python3-yaml wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 158 MB of archives. After unpacking 874 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: gromacs which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-freefont-ttf{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} gromacs-data{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-numpy1.83.0{a} libboost-python1.83.0{a} libboost-serialization1.83.0{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcoordgen3{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libinchi1.07{a} libio-pty-perl{a} libipc-run-perl{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmaeparser1{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenmm-dev{a} libopenmm-plugins{a} libopenmm8.1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} librdkit1t64{a} libreadline8t64{a} libtime-duration-perl{a} libtimedate-perl{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libxslt1.1{a} m4{a} man-db{a} media-types{a} moreutils{a} netbase{a} ocl-icd-libopencl1{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dateutil{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-lxml{a} python3-minimal{a} python3-more-itertools{a} python3-networkx{a} python3-numpy{a} python3-openmm{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-rdkit{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-versioneer{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} rdkit-data{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-cssselect python3-gdal python3-html5lib python3-jinja2 python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pydot python3-pygments python3-pygraphviz python3-scipy python3-tables python3-yaml wget 0 packages upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 158 MB of archives. After unpacking 874 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/19013 and its subdirectories Sat Dec 14 08:44:26 UTC 2024 W: No second build log, what happened? Sat Dec 14 08:44:26 UTC 2024 W: Downloading the build dependencies failed Sat Dec 14 08:44:26 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Sat Dec 14 08:44:26 UTC 2024 W: Network problems are automatically rescheduled after some hours.