Sun Oct 20 06:32:45 UTC 2024 I: starting to build opentsne/unstable/armhf on jenkins on '2024-10-20 06:32' Sun Oct 20 06:32:45 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_32/19576/console.log Sun Oct 20 06:32:45 UTC 2024 I: Downloading source for unstable/opentsne=1.0.2-2 --2024-10-20 06:32:45-- http://deb.debian.org/debian/pool/main/o/opentsne/opentsne_1.0.2-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2323 (2.3K) [text/prs.lines.tag] Saving to: ‘opentsne_1.0.2-2.dsc’ 0K .. 100% 296M=0s 2024-10-20 06:32:45 (296 MB/s) - ‘opentsne_1.0.2-2.dsc’ saved [2323/2323] Sun Oct 20 06:32:45 UTC 2024 I: opentsne_1.0.2-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: opentsne Binary: python3-opentsne Architecture: any Version: 1.0.2-2 Maintainer: Debian PaN Maintainers Uploaders: Debian Science Maintainers , Picca Frédéric-Emmanuel , Roland Mas , Homepage: https://github.com/pavlin-policar/openTSNE Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/science-team/opentsne Vcs-Git: https://salsa.debian.org/science-team/opentsne.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn Package-List: python3-opentsne deb python optional arch=any Checksums-Sha1: 6c3dba6ffa253e6d0666c6d2b3755cd3bdea04cf 22107860 opentsne_1.0.2.orig.tar.gz adc859b42b1048ee3063f2492a2e6ea491f4ff0d 4712 opentsne_1.0.2-2.debian.tar.xz Checksums-Sha256: 41d34d969b26649a1f3a3778a1b874b690bfbe71536c0d436fe35318bf3aedae 22107860 opentsne_1.0.2.orig.tar.gz 4850a3a075049c2500b6fbac9dc5b1b86a09242a197758ce6c4c790485f3dc78 4712 opentsne_1.0.2-2.debian.tar.xz Files: f8431e0c31572599f673433506ad7eea 22107860 opentsne_1.0.2.orig.tar.gz 2be9018e5537d4743d907dbb892feacf 4712 opentsne_1.0.2-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEtBU2D1kett1zr/uD0w3s0lmTIvwFAmb8M/0ACgkQ0w3s0lmT Ivx5dQ/7BRoDwWGOLwbJXQTSsmXU1GAXci+VBrZ2hjkza7+gVJai/sUsTNXip8sf QDzeBc/qUl8dl/iHMbc/3n5anOgJ3304cZBKWXVPcabmQ5mAc8J/s9nYs0DL6Fs7 2jRbWKSg8t9QDK+ctNv3ot6an+3Z5KfK/0BNxnlz95QwY6Q4LAXb+SxUvmAEOcsN y4DHUvCkaoZnA3wjoDoWvs37sn48lCcomtBbXP9m8MOc0xJdakSFPhTdemaaNSDu 6bhzcjfbIf4YyC4UjkdpeDPWaAeabJZzCgcufa8cZBJjiF/TO16sxCLYuE5vnhtq z87Syh76/hP1RdkcZqQB+D+a9njexJ+ZPipF8Gmo8VsTrzK4rVMSPWdKV7zeav26 wnTpmQY14Z1xU4+RLtrqEkxElbdO1ngBM7oQPIoKWF2W3QI9+PvJl17aV4h82EOV UlYR9OJDj7sJMCLGis1+e81o+tkvj3vQWJ6iV/0IQqDeAu02AgZSSG36f+JH8vXO 2U5XLbCR51WCqRzWWPyOf+M3aDQUoLq+/91gesUpOlClOVQJfLRHxVmIf5k3P+GT P0I6jwnt3BqUpY5K7wT7HQIa++8wwaeBHL4zQCncXq27DGE0ZxfTv08sqfEOmrFx /JZXegF2Zk2zvn2pU1TPCU1zy6BpzgQHEvvX8Rdlk1tSwOyjPwE= =ZQwD -----END PGP SIGNATURE----- Sun Oct 20 06:32:45 UTC 2024 I: Checking whether the package is not for us Sun Oct 20 06:32:45 UTC 2024 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Sun Oct 20 06:32:45 UTC 2024 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Sun Oct 20 06:43:13 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Oct 19 18:32:56 -12 2024 I: pbuilder-time-stamp: 1729405976 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [opentsne_1.0.2-2.dsc] I: copying [./opentsne_1.0.2.orig.tar.gz] I: copying [./opentsne_1.0.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 1 17:40:13 2024 gpgv: using RSA key B415360F591EB6DD73AFFB83D30DECD2599322FC gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./opentsne_1.0.2-2.dsc: no acceptable signature found dpkg-source: info: extracting opentsne in opentsne-1.0.2 dpkg-source: info: unpacking opentsne_1.0.2.orig.tar.gz dpkg-source: info: unpacking opentsne_1.0.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-one-test-on-i386.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/17007/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='36dacb40db5b46cebf55b018c33f6721' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='17007' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LMxKbLVv/pbuilderrc_HpP6 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LMxKbLVv/b1 --logfile b1/build.log opentsne_1.0.2-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-26-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/17007/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-sequence-numpy3, dh-sequence-python3, libfftw3-dev, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-pytest, python3-pytest-runner, python3-scipy, python3-setuptools, python3-sklearn dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19665 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-numpy3; however: Package dh-sequence-numpy3 is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libfftw3-dev; however: Package libfftw3-dev is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-runner; however: Package python3-pytest-runner is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sklearn; however: Package python3-sklearn is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-decorator{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-joblib{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-runner{a} python3-scipy{a} python3-setuptools{a} python3-sklearn{a} python3-sklearn-lib{a} python3-threadpoolctl{a} python3-toml{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl linux-sysctl-defaults lynx psmisc python3-matplotlib python3-pil python3-psutil python3-pygments python3-simplejson wget 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 66.5 MB of archives. After unpacking 254 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-1 [800 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-1 [1809 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 12 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-1 [1820 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-6 [864 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf cython3 armhf 3.0.11+dfsg-1 [2265 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.3.0-1 [36.5 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 74.1.2-2 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.20.2-1 [10.3 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 74.1.2-2 [736 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20240824 [109 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libblas3 armhf 3.12.0-3 [108 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.3-1 [139 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libfftw3-double3 armhf 3.3.10-1+b3 [331 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libfftw3-single3 armhf 3.3.10-1+b3 [520 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libfftw3-bin armhf 3.3.10-1+b3 [42.0 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libfftw3-dev armhf 3.3.10-1+b3 [834 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-6 [263 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf liblapack3 armhf 3.12.0-3 [1803 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1+b1 [25.5 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libpython3.12t64 armhf 3.12.7-1 [1848 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libpython3.12-dev armhf 3.12.7-1 [3808 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.12.6-1 [9952 B] Get: 82 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.12.6-1 [1064 B] Get: 83 http://deb.debian.org/debian unstable/main armhf python3-packaging all 24.1-1 [45.8 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf python3-pyproject-hooks all 1.1.0-2 [11.3 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf python3-toml all 0.10.2-1 [16.2 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf python3-wheel all 0.44.0-2 [53.4 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf python3-build all 1.2.2-1 [36.0 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf pybuild-plugin-pyproject all 6.20240824 [11.2 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.12.6-1 [1040 B] Get: 91 http://deb.debian.org/debian unstable/main armhf python3.12-dev armhf 3.12.7-1 [505 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.12.6-1 [26.1 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.12.6-1 [1068 B] Get: 94 http://deb.debian.org/debian unstable/main armhf python3-decorator all 5.1.1-5 [15.1 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf python3-iniconfig all 1.1.1-2 [6396 B] Get: 96 http://deb.debian.org/debian unstable/main armhf python3-joblib all 1.3.2-4 [216 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf python3-numpy armhf 1:1.26.4+ds-11 [3340 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf python3-pluggy all 1.5.0-1 [26.9 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf python3-pytest all 8.3.3-1 [249 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf python3-pytest-runner all 2.11.1-4 [8432 B] Get: 101 http://deb.debian.org/debian unstable/main armhf python3-scipy armhf 1.13.1-5 [15.2 MB] Get: 102 http://deb.debian.org/debian unstable/main armhf python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf python3-sklearn-lib armhf 1.4.2+dfsg-6 [3163 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf python3-sklearn all 1.4.2+dfsg-6 [2248 kB] Fetched 66.5 MB in 1s (52.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19665 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.3-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_armhf.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:armhf (3.12.7-1) ... Setting up libexpat1:armhf (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19985 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_armhf.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21045 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_armhf.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package libproc2-0:armhf. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-6_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-6_armhf.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/opentsne-1.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../opentsne_1.0.2-2_source.changes dpkg-buildpackage: info: source package opentsne dpkg-buildpackage: info: source version 1.0.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Roland Mas dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules execute_after_dh_clean make[1]: Entering directory '/build/reproducible-path/opentsne-1.0.2' # remove the cython generated file to force rebuild rm -f openTSNE/_tsne.cpp openTSNE/kl_divergence.cpp openTSNE/quad_tree.cpp openTSNE/_matrix_mul/matrix_mul_fftw3.cpp openTSNE/_matrix_mul/matrix_mul_numpy.cpp make[1]: Leaving directory '/build/reproducible-path/opentsne-1.0.2' debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne * Building wheel... FFTW3 header files found. Using FFTW implementation of FFT. running bdist_wheel running build running build_py creating build/lib.linux-armv7l-cpython-312 creating build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/metrics.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/sklearn.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/callbacks.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/initialization.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/tsne.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/nearest_neighbors.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/__init__.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/affinity.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/utils.py -> build/lib.linux-armv7l-cpython-312/openTSNE copying openTSNE/version.py -> build/lib.linux-armv7l-cpython-312/openTSNE creating build/lib.linux-armv7l-cpython-312/openTSNE/dependencies copying openTSNE/dependencies/__init__.py -> build/lib.linux-armv7l-cpython-312/openTSNE/dependencies creating build/lib.linux-armv7l-cpython-312/openTSNE/_matrix_mul copying openTSNE/_matrix_mul/__init__.py -> build/lib.linux-armv7l-cpython-312/openTSNE/_matrix_mul creating build/lib.linux-armv7l-cpython-312/openTSNE/dependencies/annoy copying openTSNE/dependencies/annoy/__init__.py -> build/lib.linux-armv7l-cpython-312/openTSNE/dependencies/annoy running build_ext creating build/reproducible-path/opentsne-1.0.2/tmp4oq561_q arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -pedantic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -c /build/reproducible-path/opentsne-1.0.2/tmp4oq561_q/omp.c -o build/reproducible-path/opentsne-1.0.2/tmp4oq561_q/omp.o arm-linux-gnueabihf-gcc build/reproducible-path/opentsne-1.0.2/tmp4oq561_q/omp.o -o /build/reproducible-path/opentsne-1.0.2/tmp4oq561_q/omp.c performance hint: openTSNE/quad_tree.pyx:73:5: Exception check on 'update_center_of_mass' will always require the GIL to be acquired. Possible solutions: 1. Declare 'update_center_of_mass' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on 'update_center_of_mass' to allow an error code to be returned. performance hint: openTSNE/quad_tree.pxd:21:18: No exception value declared for 'is_close' in pxd file. Users cimporting this function and calling it without the gil will always require an exception check. Suggest adding an explicit exception value. warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' warning: openTSNE/quad_tree.pyx:166:24: Not all members given for struct 'Node' Found openmp. Compiling with openmp flags... Compiling openTSNE/quad_tree.pyx because it changed. [1/1] Cythonizing openTSNE/quad_tree.pyx building 'openTSNE.quad_tree' extension creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/openTSNE arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/quad_tree.cpp -o build/temp.linux-armv7l-cpython-312/openTSNE/quad_tree.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/quad_tree.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/openTSNE/quad_tree.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/openTSNE/quad_tree.cpython-312-arm-linux-gnueabihf.so -fopenmp warning: openTSNE/_tsne.pyx:9:7: implicit declaration of 'np' performance hint: openTSNE/_tsne.pyx:225:5: Exception check on '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dest_sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dtype' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'arg_base' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_series' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'last_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sig_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sigindex_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'dst_type' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_matches' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'found_candidates' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'sn' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'type_match' warning: openTSNE/_tsne.pyx:104:6: implicit declaration of 'candidates' warning: openTSNE/_tsne.pyx:540:8: implicit declaration of 'coord_max' warning: openTSNE/_tsne.pyx:542:8: implicit declaration of 'coord_min' performance hint: openTSNE/_tsne.pyx:207:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. performance hint: openTSNE/_tsne.pyx:234:56: Exception check after calling 'is_close' will always require the GIL to be acquired. Possible solutions: 1. Declare 'is_close' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Declare any exception value explicitly for functions in pxd files. performance hint: openTSNE/_tsne.pyx:275:42: Exception check after calling '_estimate_negative_gradient_single' will always require the GIL to be acquired. Possible solutions: 1. Declare '_estimate_negative_gradient_single' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2. Use an 'int' return type on '_estimate_negative_gradient_single' to allow an error code to be returned. Compiling openTSNE/_tsne.pyx because it changed. [1/1] Cythonizing openTSNE/_tsne.pyx building 'openTSNE._tsne' extension arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_tsne.cpp -o build/temp.linux-armv7l-cpython-312/openTSNE/_tsne.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_tsne.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/openTSNE/_tsne.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/openTSNE/_tsne.cpython-312-arm-linux-gnueabihf.so -fopenmp warning: openTSNE/kl_divergence.pyx:9:7: implicit declaration of 'np' warning: openTSNE/kl_divergence.pyx:17:19: implicit declaration of 'estimate_positive_gradient_nn' Compiling openTSNE/kl_divergence.pyx because it changed. [1/1] Cythonizing openTSNE/kl_divergence.pyx building 'openTSNE.kl_divergence' extension arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/kl_divergence.cpp -o build/temp.linux-armv7l-cpython-312/openTSNE/kl_divergence.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/kl_divergence.cpp:1279: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/openTSNE/kl_divergence.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/openTSNE/kl_divergence.cpython-312-arm-linux-gnueabihf.so -fopenmp building 'openTSNE.dependencies.annoy.annoylib' extension creating build/temp.linux-armv7l-cpython-312/openTSNE/dependencies creating build/temp.linux-armv7l-cpython-312/openTSNE/dependencies/annoy arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/dependencies/annoy/annoymodule.cc -o build/temp.linux-armv7l-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -std=c++14 -DANNOYLIB_MULTITHREADED_BUILD -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp openTSNE/dependencies/annoy/annoymodule.cc: In function 'bool convert_list_to_vector(PyObject*, int, std::vector >*)': openTSNE/dependencies/annoy/annoymodule.cc:304:69: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Py_ssize_t' {aka 'int'} [-Wformat=] 304 | snprintf(buf, 128, "Vector has wrong length (expected %d, got %ld)", f, PyObject_Size(v)); | ~~^ ~~~~~~~~~~~~~~~~ | | | | long int Py_ssize_t {aka int} | %d In file included from openTSNE/dependencies/annoy/annoymodule.cc:15: openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoymodule.cc:96:84: required from here 96 | bool load(const char* filename, bool prefault, char** error) { return _index.load(filename, prefault, error); }; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = long long unsigned int; D = Hamming; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = long long unsigned int; Distance = Hamming; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoymodule.cc:92:71: required from here 92 | bool build(int q, int n_threads, char** error) { return _index.build(q, n_threads, error); }; | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'bool AnnoyIndex::load(const char*, bool, char**) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1052:8: required from here 1052 | bool load(const char* filename, bool prefault=false, char** error=NULL) { | ^~~~ openTSNE/dependencies/annoy/annoylib.h:1101:30: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1101:39: note: format string is defined here 1101 | if (_verbose) showUpdate("found %lu roots with degree %d\n", _roots.size(), m); | ~~^ | | | long unsigned int | %u openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = DotProduct; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = DotProduct; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Manhattan; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Manhattan; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Euclidean; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Euclidean; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h: In instantiation of 'S AnnoyIndex::_make_tree(const std::vector<_Tp>&, bool, Random&, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]': openTSNE/dependencies/annoy/annoylib.h:1174:30: required from 'void AnnoyIndex::thread_build(int, int, ThreadedBuildPolicy&) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 1174 | thread_roots.push_back(_make_tree(indices, true, _random, threaded_build_policy)); | ^~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1435:9: required from 'static void AnnoyIndexMultiThreadedBuildPolicy::build(AnnoyIndex*, int, int) [with S = int; T = float; D = Angular; Random = Kiss64Random]' 1435 | &AnnoyIndex::thread_build, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:952:46: required from 'bool AnnoyIndex::build(int, int, char**) [with S = int; T = float; Distance = Angular; Random = Kiss64Random; ThreadedBuildPolicy = AnnoyIndexMultiThreadedBuildPolicy]' 952 | ThreadedBuildPolicy::template build(this, q, n_threads); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:937:8: required from here 937 | bool build(int q, int n_threads=-1, char** error=NULL) { | ^~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:55: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d openTSNE/dependencies/annoy/annoylib.h:1294:20: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'std::vector >::size_type' {aka 'unsigned int'} [-Wformat=] 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1295 | children_indices[0].size(), children_indices[1].size()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | std::vector >::size_type {aka unsigned int} openTSNE/dependencies/annoy/annoylib.h:75:45: note: in definition of macro 'showUpdate' 75 | #define showUpdate(...) { fprintf(stderr, __VA_ARGS__ ); } | ^~~~~~~~~~~ openTSNE/dependencies/annoy/annoylib.h:1294:79: note: format string is defined here 1294 | showUpdate("\tNo hyperplane found (left has %ld children, right has %ld children)\n", | ~~^ | | | long int | %d In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from openTSNE/dependencies/annoy/annoylib.h:57: /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector, allocator > > >; _Distance = int; _Tp = pair; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72, from openTSNE/dependencies/annoy/annoylib.h:56: /usr/include/c++/14/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = float; _Alloc = std::allocator]': /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 954 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc:954:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 In file included from /usr/include/c++/14/vector:66: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = float; _Alloc = std::allocator]', inlined from 'virtual void HammingWrapper::get_nns_by_vector(const float*, size_t, int, std::vector >*, std::vector >*) const' at openTSNE/dependencies/annoy/annoymodule.cc:113:24: /usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1488 | _M_range_insert(begin() + __offset, __first, __last, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1489 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = float; _Alloc = std::allocator]', inlined from 'virtual void HammingWrapper::get_nns_by_item(int32_t, size_t, int, std::vector >*, std::vector >*) const' at openTSNE/dependencies/annoy/annoymodule.cc:102:24: /usr/include/c++/14/bits/stl_vector.h:1488:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 1488 | _M_range_insert(begin() + __offset, __first, __last, | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1489 | std::__iterator_category(__first)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/openTSNE/dependencies/annoy/annoymodule.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-arm-linux-gnueabihf.so -fopenmp warning: openTSNE/_matrix_mul/matrix_mul_fftw3.pyx:9:7: implicit declaration of 'np' Compiling openTSNE/_matrix_mul/matrix_mul_fftw3.pyx because it changed. [1/1] Cythonizing openTSNE/_matrix_mul/matrix_mul_fftw3.pyx building 'openTSNE._matrix_mul.matrix_mul' extension creating build/temp.linux-armv7l-cpython-312/openTSNE/_matrix_mul arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/Library/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c openTSNE/_matrix_mul/matrix_mul_fftw3.cpp -o build/temp.linux-armv7l-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -O3 -ffast-math -fno-finite-math-only -fno-associative-math -fopenmp In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from openTSNE/_matrix_mul/matrix_mul_fftw3.cpp:1282: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/reproducible-path/opentsne-1.0.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-312/openTSNE/_matrix_mul/matrix_mul_fftw3.o -L/usr/lib -L/usr/Library/lib -L/usr/lib/arm-linux-gnueabihf -lfftw3 -o build/lib.linux-armv7l-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-arm-linux-gnueabihf.so -fopenmp installing to build/bdist.linux-armv7l/wheel running install running install_lib creating build/bdist.linux-armv7l creating build/bdist.linux-armv7l/wheel creating build/bdist.linux-armv7l/wheel/openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/metrics.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/sklearn.py -> build/bdist.linux-armv7l/wheel/./openTSNE creating build/bdist.linux-armv7l/wheel/openTSNE/dependencies copying build/lib.linux-armv7l-cpython-312/openTSNE/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./openTSNE/dependencies creating build/bdist.linux-armv7l/wheel/openTSNE/dependencies/annoy copying build/lib.linux-armv7l-cpython-312/openTSNE/dependencies/annoy/annoylib.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-armv7l-cpython-312/openTSNE/dependencies/annoy/__init__.py -> build/bdist.linux-armv7l/wheel/./openTSNE/dependencies/annoy copying build/lib.linux-armv7l-cpython-312/openTSNE/kl_divergence.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./openTSNE creating build/bdist.linux-armv7l/wheel/openTSNE/_matrix_mul copying build/lib.linux-armv7l-cpython-312/openTSNE/_matrix_mul/matrix_mul.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./openTSNE/_matrix_mul copying build/lib.linux-armv7l-cpython-312/openTSNE/_matrix_mul/__init__.py -> build/bdist.linux-armv7l/wheel/./openTSNE/_matrix_mul copying build/lib.linux-armv7l-cpython-312/openTSNE/callbacks.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/initialization.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/tsne.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/quad_tree.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/_tsne.cpython-312-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/nearest_neighbors.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/__init__.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/affinity.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/utils.py -> build/bdist.linux-armv7l/wheel/./openTSNE copying build/lib.linux-armv7l-cpython-312/openTSNE/version.py -> build/bdist.linux-armv7l/wheel/./openTSNE running install_egg_info running egg_info creating openTSNE.egg-info writing openTSNE.egg-info/PKG-INFO writing dependency_links to openTSNE.egg-info/dependency_links.txt writing requirements to openTSNE.egg-info/requires.txt writing top-level names to openTSNE.egg-info/top_level.txt writing manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest file 'openTSNE.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'openTSNE' adding license file 'LICENSE' writing manifest file 'openTSNE.egg-info/SOURCES.txt' Copying openTSNE.egg-info to build/bdist.linux-armv7l/wheel/./openTSNE-1.0.2.egg-info running install_scripts creating build/bdist.linux-armv7l/wheel/openTSNE-1.0.2.dist-info/WHEEL creating '/build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/.tmp-l5f2fc29/openTSNE-1.0.2-cp312-cp312-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it adding 'openTSNE/__init__.py' adding 'openTSNE/_tsne.cpython-312-arm-linux-gnueabihf.so' adding 'openTSNE/affinity.py' adding 'openTSNE/callbacks.py' adding 'openTSNE/initialization.py' adding 'openTSNE/kl_divergence.cpython-312-arm-linux-gnueabihf.so' adding 'openTSNE/metrics.py' adding 'openTSNE/nearest_neighbors.py' adding 'openTSNE/quad_tree.cpython-312-arm-linux-gnueabihf.so' adding 'openTSNE/sklearn.py' adding 'openTSNE/tsne.py' adding 'openTSNE/utils.py' adding 'openTSNE/version.py' adding 'openTSNE/_matrix_mul/__init__.py' adding 'openTSNE/_matrix_mul/matrix_mul.cpython-312-arm-linux-gnueabihf.so' adding 'openTSNE/dependencies/__init__.py' adding 'openTSNE/dependencies/annoy/__init__.py' adding 'openTSNE/dependencies/annoy/annoylib.cpython-312-arm-linux-gnueabihf.so' adding 'openTSNE-1.0.2.dist-info/LICENSE' adding 'openTSNE-1.0.2.dist-info/METADATA' adding 'openTSNE-1.0.2.dist-info/WHEEL' adding 'openTSNE-1.0.2.dist-info/top_level.txt' adding 'openTSNE-1.0.2.dist-info/RECORD' removing build/bdist.linux-armv7l/wheel Successfully built openTSNE-1.0.2-cp312-cp312-linux_armv7l.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build configfile: pyproject.toml plugins: typeguard-4.3.0 collected 163 items tests/test_affinities.py ......................... [ 15%] tests/test_correctness.py .......................... [ 31%] tests/test_different_usages.py ............ [ 38%] tests/test_nearest_neighbors.py ..................ssssssssssssssssssssss [ 63%] ss [ 64%] tests/test_sklearn_wrapper.py ... [ 66%] tests/test_tsne.py ...ss............................................... [ 98%] tests/test_utils.py ... [100%] =============================== warnings summary =============================== tests/test_correctness.py::TestDataMatricesWithDuplicatedRows::test_works_without_error /usr/lib/python3/dist-packages/sklearn/preprocessing/_discretization.py:248: FutureWarning: In version 1.5 onwards, subsample=200_000 will be used by default. Set subsample explicitly to silence this warning in the mean time. Set subsample=None to disable subsampling explicitly. warnings.warn( tests/test_different_usages.py::TestUsageWithCustomAffinity::test_affinity tests/test_different_usages.py::TestUsageWithCustomAffinity::test_precomputed_affinity tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_distances tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_precomputed_neighbors tests/test_different_usages.py::TestUsageWithCustomAffinityAndCustomNeighbors::test_affinity_with_queryable_knn_index tests/test_tsne.py::TestAffinityIntegration::test_transform_with_nonstandard_affinity /build/reproducible-path/opentsne-1.0.2/.pybuild/cpython3_3.12_opentsne/build/openTSNE/affinity.py:1219: FutureWarning: Using `mean` symmetrization, but the default behaviour is going to change to `max` in future versions. warnings.warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========== 137 passed, 26 skipped, 7 warnings in 268.16s (0:04:28) ============ create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-opentsne/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_numpy3 -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-opentsne' in '../python3-opentsne_1.0.2-2_armhf.deb'. dpkg-deb: building package 'python3-opentsne-dbgsym' in '../python3-opentsne-dbgsym_1.0.2-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../opentsne_1.0.2-2_armhf.buildinfo dpkg-genchanges --build=binary -O../opentsne_1.0.2-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/17007 and its subdirectories I: Current time: Sat Oct 19 18:42:55 -12 2024 I: pbuilder-time-stamp: 1729406575 Sun Oct 20 06:43:16 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32c-armhf-rb.debian.net. Sun Oct 20 06:43:16 UTC 2024 I: Preparing to do remote build '2' on virt32c-armhf-rb.debian.net. Sun Oct 20 06:53:49 UTC 2024 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. Sun Oct 20 06:53:52 UTC 2024 I: opentsne_1.0.2-2_armhf.changes: Format: 1.8 Date: Tue, 01 Oct 2024 19:32:56 +0200 Source: opentsne Binary: python3-opentsne python3-opentsne-dbgsym Architecture: armhf Version: 1.0.2-2 Distribution: unstable Urgency: medium Maintainer: Debian PaN Maintainers Changed-By: Roland Mas Description: python3-opentsne - t-Distributed Stochastic Neighbor Embedding algorithm Closes: 1035191 Changes: opentsne (1.0.2-2) unstable; urgency=medium . * Add myself to Uploaders. * Use autopkgtest-pkg-pybuild instead of explicit autopkgtest scripts; incidentally, this fixes "please add autopkgtests (to add coverage for python3-numpy)", thanks to Sandro Tosi (Closes: #1035191). Checksums-Sha1: aeeb391ffe3d5cc509599ae8387bf21057fa55bd 7226 opentsne_1.0.2-2_armhf.buildinfo fe12f9dd74fa70add6ae0dc07242e42b95e74228 2516144 python3-opentsne-dbgsym_1.0.2-2_armhf.deb 33ee7eca65aa2b93dbc453f7816b04d9c2c2f1b5 307048 python3-opentsne_1.0.2-2_armhf.deb Checksums-Sha256: 4f0608501aa42e56577bf6e52284dd7e5c99f16db02b6b3c19954a7209471ece 7226 opentsne_1.0.2-2_armhf.buildinfo 93e2e9771808c2108361ac6034718eee222106fa3b36cab01e3063e72aa2f25b 2516144 python3-opentsne-dbgsym_1.0.2-2_armhf.deb 0a44ff91ca16879f9ae3c4d6fdaad6a0e92cb937d7f622a97dd136cca86e122e 307048 python3-opentsne_1.0.2-2_armhf.deb Files: 08086a264d44b708c148c313b8268732 7226 python optional opentsne_1.0.2-2_armhf.buildinfo 77e37bf8e7dd67eedb0d232da73d9f74 2516144 debug optional python3-opentsne-dbgsym_1.0.2-2_armhf.deb 97509b531c9a6b29924e8e60581876b7 307048 python optional python3-opentsne_1.0.2-2_armhf.deb Sun Oct 20 06:53:53 UTC 2024 I: diffoscope 281 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_32-19576.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.LMxKbLVv/opentsne_1.0.2-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.LMxKbLVv/opentsne_1.0.2-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.LMxKbLVv/opentsne_1.0.2-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.LMxKbLVv/b1/opentsne_1.0.2-2_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.LMxKbLVv/b2/opentsne_1.0.2-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.407s) 0.407s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.046s) 0.046s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 757ms CPU time consumed: 758ms Sun Oct 20 06:53:54 UTC 2024 I: diffoscope 281 found no differences in the changes files, and a .buildinfo file also exists. Sun Oct 20 06:53:54 UTC 2024 I: opentsne from unstable built successfully and reproducibly on armhf. Sun Oct 20 06:53:55 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Oct 20 06:53:55 UTC 2024 I: Submitting 8.0K b1/opentsne_1.0.2-2_armhf.buildinfo.asc Sun Oct 20 06:53:55 UTC 2024 I: Submitting 8.0K b2/opentsne_1.0.2-2_armhf.buildinfo.asc Sun Oct 20 06:53:56 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Oct 20 06:53:56 UTC 2024 I: Done submitting .buildinfo files. Sun Oct 20 06:53:56 UTC 2024 I: Removing signed opentsne_1.0.2-2_armhf.buildinfo.asc files: removed './b1/opentsne_1.0.2-2_armhf.buildinfo.asc' removed './b2/opentsne_1.0.2-2_armhf.buildinfo.asc'