Fri May 17 19:55:58 UTC 2024 I: starting to build milib/unstable/armhf on jenkins on '2024-05-17 19:55' Fri May 17 19:55:58 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_13/3328/console.log Fri May 17 19:55:59 UTC 2024 I: Downloading source for unstable/milib=2.2.0+dfsg-1 --2024-05-17 19:55:59-- http://deb.debian.org/debian/pool/main/m/milib/milib_2.2.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2321 (2.3K) [text/prs.lines.tag] Saving to: ‘milib_2.2.0+dfsg-1.dsc’ 0K .. 100% 288M=0s 2024-05-17 19:55:59 (288 MB/s) - ‘milib_2.2.0+dfsg-1.dsc’ saved [2321/2321] Fri May 17 19:55:59 UTC 2024 I: milib_2.2.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: milib Binary: libmilib-java Architecture: all Version: 2.2.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Pierre Gruet Homepage: https://milaboratory.com/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/milib Vcs-Git: https://salsa.debian.org/med-team/milib.git Build-Depends: debhelper-compat (= 13), default-jdk, gradle-debian-helper, javahelper, maven-repo-helper Build-Depends-Indep: junit4 , libcommons-compress-java, libcommons-io-java, libcommons-math3-java, libguava-java, libjackson2-annotations-java, libjackson2-core-java, libjackson2-databind-java, libjcommander-java, liblz4-java, libmockito-java , libredberry-pipe-java, libtrove3-java Package-List: libmilib-java deb java optional arch=all Checksums-Sha1: 8bdc2c9f5b41fb8f019e40aa92319f8f44cf53b0 297272 milib_2.2.0+dfsg.orig.tar.xz 8679f47ef3b51a7903c90aec7b1cc0f03d5519ba 7164 milib_2.2.0+dfsg-1.debian.tar.xz Checksums-Sha256: fcb526a82893ed03e0e2ee03fc903068ab0e1ba3756882fde5772570d925bea8 297272 milib_2.2.0+dfsg.orig.tar.xz 3580819348a335020267872364231b07d94acc187fe8f8d1e725cd435ca99da0 7164 milib_2.2.0+dfsg-1.debian.tar.xz Files: 0f3366106ffc38854a4ecb1291948b37 297272 milib_2.2.0+dfsg.orig.tar.xz 1ccdc6feb357479034ab0802e1ec790f 7164 milib_2.2.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEM8soQxPpC9J9y0UjYAMWptwndHYFAmOu8MEACgkQYAMWptwn dHb8exAAgNgcLCIp51bVmOXq+5+TMCGtZH0+gUjZYfnhqvzgRcVtjsY4KyVRaxvv 43ldjF+xJOnapBdgG9Yk/JwyooGIk3L7x2d2fSflxqfvCqjRqCWC7EZ43FDESdWx +Xb48U+1t5rW6ucA+GIGuaI3/wL8UTxm9O/ZCdk0zdFoUFeNHOEMPw8/Fysy7z6U gCg2TbPTfrgsnGbTCv9pHqT7/FE8cMNLbd5P61acd/Afa1qym01RxcUlMcGqOS4R 4gf49LshEB1ftRu4XjE9ka6S9svWWxPFK3Qq6qM8otWcsn91BJEsRx7qo0iY/cw6 JoALJr/kq/3QXIiP4a2A6WuP5l53xrNyLZ8E5B95JZnDw887seHibv0BMvKIAxEG GGvsIhd3qWMHSfu5IQckXkg+Vl6spdb82shQpkUOUy7+Nshnplw5Vn5KQ2Ll39j/ sNZpLsb1IMaagRQVp57cFgFCPyHgbTnuHMMhUZJ7n6W7Gqb3bkFDjdKtJnrcSB7i Dltz0RpNUNRmCzfzKNRWORRMQ1CD2cUD8CZK7yqdoSv5S6cGGsMIHuAT2pY4vA6N FE/usfcq76Eghl8xO6XLFLIJxrVSM8iBXQ4TTmA+oUf+ESZ0yb09OwwuEh60MWLM 8CiI7eUUWryGLXgJtjZZkcEFj9qxSblrje70pr9KGmDoWFQQ2R8= =eoDq -----END PGP SIGNATURE----- Fri May 17 19:55:59 UTC 2024 I: Checking whether the package is not for us Fri May 17 19:55:59 UTC 2024 I: Starting 1st build on remote node ff64a-armhf-rb.debian.net. Fri May 17 19:55:59 UTC 2024 I: Preparing to do remote build '1' on ff64a-armhf-rb.debian.net. Fri May 17 20:31:46 UTC 2024 I: Deleting $TMPDIR on ff64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri May 17 07:56:08 -12 2024 I: pbuilder-time-stamp: 1715975768 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [milib_2.2.0+dfsg-1.dsc] I: copying [./milib_2.2.0+dfsg.orig.tar.xz] I: copying [./milib_2.2.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 30 14:08:01 2022 gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./milib_2.2.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting milib in milib-2.2.0+dfsg dpkg-source: info: unpacking milib_2.2.0+dfsg.orig.tar.xz dpkg-source: info: unpacking milib_2.2.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying build_gradle.patch dpkg-source: info: applying guava_interface.patch dpkg-source: info: applying deactivate_test_reading_build_properties.patch dpkg-source: info: applying flaky_test.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31058/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='479bc79ca9774295bc6c521af405ed08' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31058' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mp6MxaNR/pbuilderrc_lS8X --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mp6MxaNR/b1 --logfile b1/build.log milib_2.2.0+dfsg-1.dsc' SUDO_GID='114' SUDO_UID='109' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux ff64a 6.1.0-21-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 16 07:45 /bin -> usr/bin I: user script /srv/workspace/pbuilder/31058/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), default-jdk, gradle-debian-helper, javahelper, maven-repo-helper, junit4, libcommons-compress-java, libcommons-io-java, libcommons-math3-java, libguava-java, libjackson2-annotations-java, libjackson2-core-java, libjackson2-databind-java, libjcommander-java, liblz4-java, libmockito-java, libredberry-pipe-java, libtrove3-java dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19464 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on gradle-debian-helper; however: Package gradle-debian-helper is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on junit4; however: Package junit4 is not installed. pbuilder-satisfydepends-dummy depends on libcommons-compress-java; however: Package libcommons-compress-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-io-java; however: Package libcommons-io-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-math3-java; however: Package libcommons-math3-java is not installed. pbuilder-satisfydepends-dummy depends on libguava-java; however: Package libguava-java is not installed. pbuilder-satisfydepends-dummy depends on libjackson2-annotations-java; however: Package libjackson2-annotations-java is not installed. pbuilder-satisfydepends-dummy depends on libjackson2-core-java; however: Package libjackson2-core-java is not installed. pbuilder-satisfydepends-dummy depends on libjackson2-databind-java; however: Package libjackson2-databind-java is not installed. pbuilder-satisfydepends-dummy depends on libjcommander-java; however: Package libjcommander-java is not installed. pbuilder-satisfydepends-dummy depends on liblz4-java; however: Package liblz4-java is not installed. pbuilder-satisfydepends-dummy depends on libmockito-java; however: Package libmockito-java is not installed. pbuilder-satisfydepends-dummy depends on libredberry-pipe-java; however: Package libredberry-pipe-java is not installed. pbuilder-satisfydepends-dummy depends on libtrove3-java; however: Package libtrove3-java is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} ant{a} ant-optional{a} antlr{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bnd{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} fastjar{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpgconf{a} gpgsm{a} gradle{a} gradle-debian-helper{a} groff-base{a} groovy{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} ivy{a} jarwrapper{a} java-common{a} java-wrappers{a} javahelper{a} junit4{a} libantlr-java{a} libaopalliance-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libasm-java{a} libasound2-data{a} libasound2t64{a} libassuan0{a} libatinject-jsr330-api-java{a} libatk1.0-0t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbcel-java{a} libbcpg-java{a} libbcprov-java{a} libbrotli1{a} libbsd0{a} libbsf-java{a} libbsh-java{a} libbyte-buddy-java{a} libcairo2{a} libcdi-api-java{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libcom-err2{a} libcommons-cli-java{a} libcommons-codec-java{a} libcommons-collections3-java{a} libcommons-compress-java{a} libcommons-io-java{a} libcommons-lang-java{a} libcommons-lang3-java{a} libcommons-logging-java{a} libcommons-math3-java{a} libcommons-parent-java{a} libcups2t64{a} libdatrie1{a} libdbus-1-3{a} libdd-plist-java{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdom4j-java{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libeclipse-jdt-annotation-java{a} libedit2{a} libel-api-java{a} libelf1t64{a} libencode-locale-perl{a} liberror-prone-java{a} libexpat1{a} libfelix-framework-java{a} libfelix-gogo-runtime-java{a} libfelix-resolver-java{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfindbugs-java{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgeronimo-annotation-1.3-spec-java{a} libgeronimo-interceptor-3.0-spec-java{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0t64{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgoogle-gson-java{a} libgradle-core-java{a} libgradle-plugins-java{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgtk2.0-0t64{a} libgtk2.0-common{a} libguava-java{a} libguice-java{a} libhamcrest-java{a} libharfbuzz0b{a} libhawtjni-runtime-java{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhttpclient-java{a} libhttpcore-java{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjackson2-annotations-java{a} libjackson2-core-java{a} libjackson2-databind-java{a} libjansi-java{a} libjansi-native-java{a} libjansi1-java{a} libjarjar-java{a} libjatl-java{a} libjavaewah-java{a} libjaxen-java{a} libjbig0{a} libjcifs-java{a} libjcip-annotations-java{a} libjcommander-java{a} libjetty9-java{a} libjformatstring-java{a} libjgit-java{a} libjline2-java{a} libjna-java{a} libjna-jni{a} libjpeg62-turbo{a} libjs-jquery{a} libjsch-java{a} libjsoup-java{a} libjsp-api-java{a} libjsr305-java{a} libjzlib-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libkryo-java{a} libksba8{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm17t64{a} liblogback-java{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} liblz4-java{a} liblz4-jni{a} libmagic-mgc{a} libmagic1t64{a} libmaven-parent-java{a} libmaven-resolver-java{a} libmaven-shared-utils-java{a} libmaven3-core-java{a} libminlog-java{a} libmockito-java{a} libmodule-runtime-perl{a} libmoo-perl{a} libnative-platform-java{a} libnative-platform-jni{a} libnekohtml-java{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libnspr4{a} libnss3{a} libobjenesis-java{a} libosgi-annotation-java{a} libosgi-compendium-java{a} libosgi-core-java{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libplexus-cipher-java{a} libplexus-classworlds-java{a} libplexus-component-annotations-java{a} libplexus-container-default-java{a} libplexus-interpolation-java{a} libplexus-sec-dispatcher-java{a} libplexus-utils2-java{a} libpng16-16t64{a} libpolyglot-maven-java{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libqdox-java{a} libreadline8t64{a} libredberry-pipe-java{a} libreflectasm-java{a} librhino-java{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libsharpyuv0{a} libsimple-http-java{a} libsisu-inject-java{a} libsisu-plexus-java{a} libslf4j-java{a} libsub-override-perl{a} libsub-quote-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtool{a} libtrove3-java{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvulkan1{a} libwagon-file-java{a} libwagon-http-java{a} libwagon-provider-api-java{a} libwebp7{a} libwebsocket-api-java{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxbean-reflect-java{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxpp3-java{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxstream-java{a} libxtst6{a} libxxf86vm1{a} libxz-java{a} libyaml-snake-java{a} libz3-4{a} m4{a} man-db{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} testng{a} tzdata{a} unzip{a} wdiff{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libbindex-java libdata-dump-perl libdistro-info-perl libgail-common libgdk-pixbuf2.0-bin libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libgpars-groovy-java libgtk2.0-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libreflectasm-java-doc librsvg2-common libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl libxt-dev licensecheck lintian lynx mesa-vulkan-drivers pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace wget xdg-user-dirs 0 packages upgraded, 346 newly installed, 0 to remove and 0 not upgraded. Need to get 286 MB of archives. After unpacking 714 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf binfmt-support armhf 2.2.2-7 [55.3 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf libpython3.11-minimal armhf 3.11.9-1 [805 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf python3.11-minimal armhf 3.11.9-1 [1600 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.11.8-1 [26.3 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf tzdata all 2024a-4 [255 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-4 [69.3 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libpython3.11-stdlib armhf 3.11.9-1 [1704 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf python3.11 armhf 3.11.9-1 [602 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.11.8-1 [9332 B] Get: 15 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.11.8-1 [27.4 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.2.1-3 [1326 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20240203 [158 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-4 [1090 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.1-1 [85.8 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf2.0-common all 2.42.12+dfsg-1 [311 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libglib2.0-0t64 armhf 2.80.2-1 [1314 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b3 [598 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf shared-mime-info armhf 2.4-4 [753 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libpng16-16t64 armhf 1.6.43-5 [262 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.20-1 [35.9 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b1 [27.3 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-4+b1 [137 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libsharpyuv0 armhf 1.4.0-0.1 [111 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libwebp7 armhf 1.4.0-0.1 [265 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libtiff6 armhf 4.5.1+git230720-4 [301 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libgdk-pixbuf-2.0-0 armhf 2.42.12+dfsg-1 [123 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf gtk-update-icon-cache armhf 3.24.41-4 [45.6 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf adwaita-icon-theme all 46.0-1 [614 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf ca-certificates-java all 20240118 [11.6 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf java-common all 0.75 [6640 B] Get: 46 http://deb.debian.org/debian unstable/main armhf liblcms2-2 armhf 2.14-2+b1 [126 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libnspr4 armhf 2:4.35-1.1+b1 [87.2 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libnss3 armhf 2:3.100-1 [1221 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libpcsclite1 armhf 2.2.1-1 [50.9 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf openjdk-17-jre-headless armhf 17.0.11+9-1 [38.2 MB] Get: 51 http://deb.debian.org/debian unstable/main armhf default-jre-headless armhf 2:1.17-75 [3068 B] Get: 52 http://deb.debian.org/debian unstable/main armhf ant all 1.10.14-1 [2162 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf ant-optional all 1.10.14-1 [455 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libantlr-java all 2.7.7+dfsg-13 [458 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf antlr all 2.7.7+dfsg-13 [8272 B] Get: 56 http://deb.debian.org/debian unstable/main armhf at-spi2-common all 2.52.0-1 [166 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf unzip armhf 6.0-28 [152 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf java-wrappers all 0.4 [8916 B] Get: 64 http://deb.debian.org/debian unstable/main armhf libhamcrest-java all 2.2-2 [121 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf junit4 all 4.13.2-4 [349 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libfelix-framework-java all 4.6.1-2.1 [569 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libfelix-gogo-runtime-java all 0.16.2-1.1 [114 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libosgi-annotation-java all 8.1.0-1 [9436 B] Get: 69 http://deb.debian.org/debian unstable/main armhf libosgi-core-java all 8.0.0-2 [182 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libfelix-resolver-java all 1.16.0-1 [180 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libhawtjni-runtime-java all 1.18-1 [36.3 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libjansi-native-java all 1.8-2 [26.0 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libjansi1-java all 1.18-3 [66.5 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libjline2-java all 2.14.6-5 [151 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libosgi-compendium-java all 7.0.0-1 [477 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libslf4j-java all 1.7.32-1 [144 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libxz-java all 1.9-1 [143 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libyaml-snake-java all 1.33-2 [321 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf bnd all 5.0.1-5 [10.1 MB] Get: 80 http://deb.debian.org/debian unstable/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 88 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libgtk2.0-common all 2.24.33-4 [2661 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libatk1.0-0t64 armhf 2.52.0-1 [44.0 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libfreetype6 armhf 2.13.2+dfsg-1+b4 [372 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-mono all 2.37-8 [489 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf fonts-dejavu-core all 2.37-8 [840 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf fontconfig-config armhf 2.15.0-1.1 [317 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libfontconfig1 armhf 2.15.0-1.1 [370 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libpixman-1-0 armhf 0.42.2-1+b1 [476 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1+b1 [17.4 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3+b1 [23.0 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.17.0-1 [140 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1+b1 [739 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libxcb-render0 armhf 1.17.0-1 [114 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-1 [105 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libxrender1 armhf 1:0.9.10-1.1+b1 [24.9 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libcairo2 armhf 1.18.0-3+b1 [442 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libavahi-common-data armhf 0.8-13+b2 [112 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libavahi-common3 armhf 0.8-13+b2 [40.2 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libdbus-1-3 armhf 1.14.10-4+b1 [181 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libavahi-client3 armhf 0.8-13+b2 [43.4 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1~rc2-1 [21.8 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 122 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf libcups2t64 armhf 2.4.7-1.2+b1 [213 kB] Get: 125 http://deb.debian.org/debian unstable/main armhf fontconfig armhf 2.15.0-1.1 [461 kB] Get: 126 http://deb.debian.org/debian unstable/main armhf libfribidi0 armhf 1.0.13-3+b1 [69.4 kB] Get: 127 http://deb.debian.org/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2 [63.2 kB] Get: 128 http://deb.debian.org/debian unstable/main armhf libharfbuzz0b armhf 8.3.0-2+b1 [2156 kB] Get: 129 http://deb.debian.org/debian unstable/main armhf libthai-data all 0.1.29-2 [168 kB] Get: 130 http://deb.debian.org/debian unstable/main armhf libdatrie1 armhf 0.2.13-3 [34.4 kB] Get: 131 http://deb.debian.org/debian unstable/main armhf libthai0 armhf 0.1.29-2 [45.8 kB] Get: 132 http://deb.debian.org/debian unstable/main armhf libpango-1.0-0 armhf 1.52.2+ds-1 [195 kB] Get: 133 http://deb.debian.org/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.52.2+ds-1 [41.8 kB] Get: 134 http://deb.debian.org/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.52.2+ds-1 [31.2 kB] Get: 135 http://deb.debian.org/debian unstable/main armhf libxcomposite1 armhf 1:0.4.5-1+b1 [14.4 kB] Get: 136 http://deb.debian.org/debian unstable/main armhf libxfixes3 armhf 1:6.0.0-2+b1 [18.6 kB] Get: 137 http://deb.debian.org/debian unstable/main armhf libxcursor1 armhf 1:1.2.1-1+b1 [33.2 kB] Get: 138 http://deb.debian.org/debian unstable/main armhf libxdamage1 armhf 1:1.1.6-1+b1 [14.8 kB] Get: 139 http://deb.debian.org/debian unstable/main armhf libxi6 armhf 2:1.8.1-1 [73.8 kB] Get: 140 http://deb.debian.org/debian unstable/main armhf libxinerama1 armhf 2:1.1.4-3+b1 [15.6 kB] Get: 141 http://deb.debian.org/debian unstable/main armhf libxrandr2 armhf 2:1.5.4-1 [33.0 kB] Get: 142 http://deb.debian.org/debian unstable/main armhf libgtk2.0-0t64 armhf 2.24.33-4 [1556 kB] Get: 143 http://deb.debian.org/debian unstable/main armhf libglvnd0 armhf 1.7.0-1+b1 [52.2 kB] Get: 144 http://deb.debian.org/debian unstable/main armhf libdrm-common all 2.4.120-2 [7688 B] Get: 145 http://deb.debian.org/debian unstable/main armhf libdrm2 armhf 2.4.120-2 [33.8 kB] Get: 146 http://deb.debian.org/debian unstable/main armhf libglapi-mesa armhf 24.0.7-1 [43.1 kB] Get: 147 http://deb.debian.org/debian unstable/main armhf libx11-xcb1 armhf 2:1.8.7-1+b1 [232 kB] Get: 148 http://deb.debian.org/debian unstable/main armhf libxcb-dri2-0 armhf 1.17.0-1 [106 kB] Get: 149 http://deb.debian.org/debian unstable/main armhf libxcb-dri3-0 armhf 1.17.0-1 [106 kB] Get: 150 http://deb.debian.org/debian unstable/main armhf libxcb-glx0 armhf 1.17.0-1 [120 kB] Get: 151 http://deb.debian.org/debian unstable/main armhf libxcb-present0 armhf 1.17.0-1 [105 kB] Get: 152 http://deb.debian.org/debian unstable/main armhf libxcb-randr0 armhf 1.17.0-1 [115 kB] Get: 153 http://deb.debian.org/debian unstable/main armhf libxcb-sync1 armhf 1.17.0-1 [108 kB] Get: 154 http://deb.debian.org/debian unstable/main armhf libxcb-xfixes0 armhf 1.17.0-1 [109 kB] Get: 155 http://deb.debian.org/debian unstable/main armhf libxshmfence1 armhf 1.3-1+b1 [8628 B] Get: 156 http://deb.debian.org/debian unstable/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 157 http://deb.debian.org/debian unstable/main armhf libvulkan1 armhf 1.3.280.0-1 [108 kB] Get: 158 http://deb.debian.org/debian unstable/main armhf libdrm-amdgpu1 armhf 2.4.120-2 [20.0 kB] Get: 159 http://deb.debian.org/debian unstable/main armhf libdrm-nouveau2 armhf 2.4.120-2 [16.9 kB] Get: 160 http://deb.debian.org/debian unstable/main armhf libdrm-radeon1 armhf 2.4.120-2 [19.5 kB] Get: 161 http://deb.debian.org/debian unstable/main armhf libedit2 armhf 3.1-20230828-1+b1 [77.6 kB] Get: 162 http://deb.debian.org/debian unstable/main armhf libz3-4 armhf 4.8.12-3.1+b2 [6324 kB] Get: 163 http://deb.debian.org/debian unstable/main armhf libllvm17t64 armhf 1:17.0.6-12 [21.6 MB] Get: 164 http://deb.debian.org/debian unstable/main armhf libsensors-config all 1:3.6.0-9 [14.6 kB] Get: 165 http://deb.debian.org/debian unstable/main armhf libsensors5 armhf 1:3.6.0-9 [31.9 kB] Get: 166 http://deb.debian.org/debian unstable/main armhf libgl1-mesa-dri armhf 24.0.7-1 [6476 kB] Get: 167 http://deb.debian.org/debian unstable/main armhf libglx-mesa0 armhf 24.0.7-1 [130 kB] Get: 168 http://deb.debian.org/debian unstable/main armhf libglx0 armhf 1.7.0-1+b1 [32.6 kB] Get: 169 http://deb.debian.org/debian unstable/main armhf libgl1 armhf 1.7.0-1+b1 [91.1 kB] Get: 170 http://deb.debian.org/debian unstable/main armhf libasound2-data all 1.2.11-1 [20.9 kB] Get: 171 http://deb.debian.org/debian unstable/main armhf libasound2t64 armhf 1.2.11-1+b1 [316 kB] Get: 172 http://deb.debian.org/debian unstable/main armhf libgif7 armhf 5.2.2-1 [41.2 kB] Get: 173 http://deb.debian.org/debian unstable/main armhf x11-common all 1:7.7+23 [252 kB] Get: 174 http://deb.debian.org/debian unstable/main armhf libxtst6 armhf 2:1.2.3-1.1+b1 [24.2 kB] Get: 175 http://deb.debian.org/debian unstable/main armhf openjdk-17-jre armhf 17.0.11+9-1 [163 kB] Get: 176 http://deb.debian.org/debian unstable/main armhf default-jre armhf 2:1.17-75 [1056 B] Get: 177 http://deb.debian.org/debian unstable/main armhf openjdk-17-jdk-headless armhf 17.0.11+9-1 [67.5 MB] Get: 178 http://deb.debian.org/debian unstable/main armhf default-jdk-headless armhf 2:1.17-75 [1108 B] Get: 179 http://deb.debian.org/debian unstable/main armhf openjdk-17-jdk armhf 17.0.11+9-1 [10.1 kB] Get: 180 http://deb.debian.org/debian unstable/main armhf default-jdk armhf 2:1.17-75 [1068 B] Get: 181 http://deb.debian.org/debian unstable/main armhf libassuan0 armhf 2.5.6-1+b1 [43.8 kB] Get: 182 http://deb.debian.org/debian unstable/main armhf gpgconf armhf 2.2.43-6 [103 kB] Get: 183 http://deb.debian.org/debian unstable/main armhf libksba8 armhf 1.6.6-1 [112 kB] Get: 184 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 185 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 186 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.17+dfsg-1 [161 kB] Get: 187 http://deb.debian.org/debian unstable/main armhf libnpth0t64 armhf 1.6-3.1 [16.9 kB] Get: 188 http://deb.debian.org/debian unstable/main armhf dirmngr armhf 2.2.43-6 [320 kB] Get: 189 http://deb.debian.org/debian unstable/main armhf gnupg-l10n all 2.2.43-6 [701 kB] Get: 190 http://deb.debian.org/debian unstable/main armhf gnupg-utils armhf 2.2.43-6 [425 kB] Get: 191 http://deb.debian.org/debian unstable/main armhf gpg armhf 2.2.43-6 [458 kB] Get: 192 http://deb.debian.org/debian unstable/main armhf pinentry-curses armhf 1.2.1-3+b2 [74.2 kB] Get: 193 http://deb.debian.org/debian unstable/main armhf gpg-agent armhf 2.2.43-6 [208 kB] Get: 194 http://deb.debian.org/debian unstable/main armhf gpg-wks-client armhf 2.2.43-6 [85.2 kB] Get: 195 http://deb.debian.org/debian unstable/main armhf gpgsm armhf 2.2.43-6 [215 kB] Get: 196 http://deb.debian.org/debian unstable/main armhf gnupg all 2.2.43-6 [374 kB] Get: 197 http://deb.debian.org/debian unstable/main armhf libfile-dirlist-perl all 0.05-3 [7600 B] Get: 198 http://deb.debian.org/debian unstable/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 199 http://deb.debian.org/debian unstable/main armhf libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 200 http://deb.debian.org/debian unstable/main armhf libfile-touch-perl all 0.12-2 [8816 B] Get: 201 http://deb.debian.org/debian unstable/main armhf libio-pty-perl armhf 1:1.20-1+b1 [33.9 kB] Get: 202 http://deb.debian.org/debian unstable/main armhf libipc-run-perl all 20231003.0-2 [101 kB] Get: 203 http://deb.debian.org/debian unstable/main armhf libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 204 http://deb.debian.org/debian unstable/main armhf libclass-xsaccessor-perl armhf 1.19-4+b3 [35.4 kB] Get: 205 http://deb.debian.org/debian unstable/main armhf libb-hooks-op-check-perl armhf 0.22-3+b1 [10.2 kB] Get: 206 http://deb.debian.org/debian unstable/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 207 http://deb.debian.org/debian unstable/main armhf libdevel-callchecker-perl armhf 0.009-1 [15.7 kB] Get: 208 http://deb.debian.org/debian unstable/main armhf libparams-classify-perl armhf 0.015-2+b3 [21.3 kB] Get: 209 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 210 http://deb.debian.org/debian unstable/main armhf libimport-into-perl all 1.002005-2 [11.3 kB] Get: 211 http://deb.debian.org/debian unstable/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 212 http://deb.debian.org/debian unstable/main armhf libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 213 http://deb.debian.org/debian unstable/main armhf libmoo-perl all 2.005005-1 [58.0 kB] Get: 214 http://deb.debian.org/debian unstable/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 215 http://deb.debian.org/debian unstable/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 216 http://deb.debian.org/debian unstable/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 217 http://deb.debian.org/debian unstable/main armhf libfile-listing-perl all 6.16-1 [12.4 kB] Get: 218 http://deb.debian.org/debian unstable/main armhf libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 219 http://deb.debian.org/debian unstable/main armhf liburi-perl all 5.28-1 [98.6 kB] Get: 220 http://deb.debian.org/debian unstable/main armhf libhtml-parser-perl armhf 3.82-1 [95.6 kB] Get: 221 http://deb.debian.org/debian unstable/main armhf libhtml-tree-perl all 5.07-3 [211 kB] Get: 222 http://deb.debian.org/debian unstable/main armhf libclone-perl armhf 0.46-1+b2 [13.1 kB] Get: 223 http://deb.debian.org/debian unstable/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 224 http://deb.debian.org/debian unstable/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 225 http://deb.debian.org/debian unstable/main armhf libhttp-message-perl all 6.45-1 [82.0 kB] Get: 226 http://deb.debian.org/debian unstable/main armhf libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 227 http://deb.debian.org/debian unstable/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 228 http://deb.debian.org/debian unstable/main armhf perl-openssl-defaults armhf 7+b2 [6708 B] Get: 229 http://deb.debian.org/debian unstable/main armhf libnet-ssleay-perl armhf 1.94-1+b1 [319 kB] Get: 230 http://deb.debian.org/debian unstable/main armhf libio-socket-ssl-perl all 2.085-1 [218 kB] Get: 231 http://deb.debian.org/debian unstable/main armhf libnet-http-perl all 6.23-1 [23.9 kB] Get: 232 http://deb.debian.org/debian unstable/main armhf liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 233 http://deb.debian.org/debian unstable/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 234 http://deb.debian.org/debian unstable/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 235 http://deb.debian.org/debian unstable/main armhf libwww-perl all 6.77-1 [183 kB] Get: 236 http://deb.debian.org/debian unstable/main armhf patchutils armhf 0.4.2-1 [72.5 kB] Get: 237 http://deb.debian.org/debian unstable/main armhf wdiff armhf 1.2.2-6 [118 kB] Get: 238 http://deb.debian.org/debian unstable/main armhf devscripts all 2.23.7 [1068 kB] Get: 239 http://deb.debian.org/debian unstable/main armhf fastjar armhf 2:0.98-7 [43.9 kB] Get: 240 http://deb.debian.org/debian unstable/main armhf ivy all 2.5.2-1 [1295 kB] Get: 241 http://deb.debian.org/debian unstable/main armhf libasm-java all 9.7-1 [394 kB] Get: 242 http://deb.debian.org/debian unstable/main armhf libbsf-java all 1:2.4.0-8 [76.3 kB] Get: 243 http://deb.debian.org/debian unstable/main armhf libcommons-cli-java all 1.6.0-1 [60.4 kB] Get: 244 http://deb.debian.org/debian unstable/main armhf libapache-pom-java all 29-2 [5276 B] Get: 245 http://deb.debian.org/debian unstable/main armhf libcommons-parent-java all 56-1 [10.8 kB] Get: 246 http://deb.debian.org/debian unstable/main armhf libcommons-logging-java all 1.3.0-1 [68.6 kB] Get: 247 http://deb.debian.org/debian unstable/main armhf libjansi-java all 2.4.1-2 [100 kB] Get: 248 http://deb.debian.org/debian unstable/main armhf libjsp-api-java all 2.3.4-3 [53.7 kB] Get: 249 http://deb.debian.org/debian unstable/main armhf libqdox-java all 1.12.1-3 [172 kB] Get: 250 http://deb.debian.org/debian unstable/main armhf libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 251 http://deb.debian.org/debian unstable/main armhf libxpp3-java all 1.1.4c-3 [292 kB] Get: 252 http://deb.debian.org/debian unstable/main armhf libxstream-java all 1.4.20-1 [565 kB] Get: 253 http://deb.debian.org/debian unstable/main armhf groovy all 2.4.21-10 [12.8 MB] Get: 254 http://deb.debian.org/debian unstable/main armhf libatinject-jsr330-api-java all 1.0+ds1-5 [5312 B] Get: 255 http://deb.debian.org/debian unstable/main armhf libcommons-collections3-java all 3.2.2-3 [530 kB] Get: 256 http://deb.debian.org/debian unstable/main armhf libcommons-compress-java all 1.25.0-1 [635 kB] Get: 257 http://deb.debian.org/debian unstable/main armhf libcommons-io-java all 2.16.1-1 [480 kB] Get: 258 http://deb.debian.org/debian unstable/main armhf libcommons-lang-java all 2.6-10 [273 kB] Get: 259 http://deb.debian.org/debian unstable/main armhf liberror-prone-java all 2.18.0-1 [22.5 kB] Get: 260 http://deb.debian.org/debian unstable/main armhf libjsr305-java all 0.1~+svn49-11 [26.9 kB] Get: 261 http://deb.debian.org/debian unstable/main armhf libguava-java all 32.0.1-1 [2708 kB] Get: 262 http://deb.debian.org/debian unstable/main armhf libcommons-codec-java all 1.16.0-1 [297 kB] Get: 263 http://deb.debian.org/debian unstable/main armhf libhttpcore-java all 4.4.16-1 [636 kB] Get: 264 http://deb.debian.org/debian unstable/main armhf libhttpclient-java all 4.5.14-1 [1247 kB] Get: 265 http://deb.debian.org/debian unstable/main armhf libjarjar-java all 1.4+svn142-12 [205 kB] Get: 266 http://deb.debian.org/debian unstable/main armhf libjcip-annotations-java all 20060626-6 [11.8 kB] Get: 267 http://deb.debian.org/debian unstable/main armhf libjna-jni armhf 5.14.0-1 [60.1 kB] Get: 268 http://deb.debian.org/debian unstable/main armhf libjna-java all 5.14.0-1 [237 kB] Get: 269 http://deb.debian.org/debian unstable/main armhf libjzlib-java all 1.1.3-3 [79.4 kB] Get: 270 http://deb.debian.org/debian unstable/main armhf libjsch-java all 0.1.55-1 [298 kB] Get: 271 http://deb.debian.org/debian unstable/main armhf libminlog-java all 1.3.0-1.1 [7928 B] Get: 272 http://deb.debian.org/debian unstable/main armhf libobjenesis-java all 3.3-3 [41.3 kB] Get: 273 http://deb.debian.org/debian unstable/main armhf libreflectasm-java all 1.11.9+dfsg-4 [25.0 kB] Get: 274 http://deb.debian.org/debian unstable/main armhf libkryo-java all 2.20-7 [158 kB] Get: 275 http://deb.debian.org/debian unstable/main armhf liblogback-java all 1:1.2.11-5 [701 kB] Get: 276 http://deb.debian.org/debian unstable/main armhf libnative-platform-jni armhf 0.14-6 [10.2 kB] Get: 277 http://deb.debian.org/debian unstable/main armhf libnative-platform-java all 0.14-6 [69.8 kB] Get: 278 http://deb.debian.org/debian unstable/main armhf libxml-commons-external-java all 1.4.01-6 [240 kB] Get: 279 http://deb.debian.org/debian unstable/main armhf libxml-commons-resolver1.1-java all 1.2-11 [98.3 kB] Get: 280 http://deb.debian.org/debian unstable/main armhf libxerces2-java all 2.12.2-1 [1440 kB] Get: 281 http://deb.debian.org/debian unstable/main armhf libnekohtml-java all 1.9.22.noko2-0.1 [125 kB] Get: 282 http://deb.debian.org/debian unstable/main armhf libxbean-reflect-java all 4.5-8 [133 kB] Get: 283 http://deb.debian.org/debian unstable/main armhf libgradle-core-java all 4.4.1-20 [4293 kB] Get: 284 http://deb.debian.org/debian unstable/main armhf libbcprov-java all 1.77-1 [5300 kB] Get: 285 http://deb.debian.org/debian unstable/main armhf libbcpg-java all 1.77-1 [428 kB] Get: 286 http://deb.debian.org/debian unstable/main armhf libbsh-java all 2.0b4-20 [291 kB] Get: 287 http://deb.debian.org/debian unstable/main armhf libdd-plist-java all 1.20-1.1 [72.6 kB] Get: 288 http://deb.debian.org/debian unstable/main armhf libjaxen-java all 1.1.6-4 [214 kB] Get: 289 http://deb.debian.org/debian unstable/main armhf libdom4j-java all 2.1.4-1 [312 kB] Get: 290 http://deb.debian.org/debian unstable/main armhf libbcel-java all 6.5.0-2 [634 kB] Get: 291 http://deb.debian.org/debian unstable/main armhf libjformatstring-java all 0.10~20131207-2.1 [34.5 kB] Get: 292 http://deb.debian.org/debian unstable/main armhf libfindbugs-java all 3.1.0~preview2-3 [3502 kB] Get: 293 http://deb.debian.org/debian unstable/main armhf libgoogle-gson-java all 2.10.1-1 [262 kB] Get: 294 http://deb.debian.org/debian unstable/main armhf libaopalliance-java all 20070526-7 [8572 B] Get: 295 http://deb.debian.org/debian unstable/main armhf libguice-java all 4.2.3-2 [1435 kB] Get: 296 http://deb.debian.org/debian unstable/main armhf libjatl-java all 0.2.3-1.1 [29.0 kB] Get: 297 http://deb.debian.org/debian unstable/main armhf libjcifs-java all 1.3.19-2 [394 kB] Get: 298 http://deb.debian.org/debian unstable/main armhf libeclipse-jdt-annotation-java all 2.2.700+eclipse4.26-2 [25.3 kB] Get: 299 http://deb.debian.org/debian unstable/main armhf libjavaewah-java all 1.2.3-1 [159 kB] Get: 300 http://deb.debian.org/debian unstable/main armhf libel-api-java all 3.0.0-3 [64.9 kB] Get: 301 http://deb.debian.org/debian unstable/main armhf libwebsocket-api-java all 1.1-2 [40.1 kB] Get: 302 http://deb.debian.org/debian unstable/main armhf libjetty9-java all 9.4.54-1 [2980 kB] Get: 303 http://deb.debian.org/debian unstable/main armhf libjgit-java all 6.7.0-1 [3153 kB] Get: 304 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 305 http://deb.debian.org/debian unstable/main armhf libcommons-lang3-java all 3.14.0-1 [621 kB] Get: 306 http://deb.debian.org/debian unstable/main armhf libplexus-utils2-java all 3.4.2-1 [258 kB] Get: 307 http://deb.debian.org/debian unstable/main armhf libwagon-provider-api-java all 3.5.3-1 [48.2 kB] Get: 308 http://deb.debian.org/debian unstable/main armhf libmaven-resolver-java all 1.6.3-1 [548 kB] Get: 309 http://deb.debian.org/debian unstable/main armhf libgeronimo-annotation-1.3-spec-java all 1.3-1 [11.1 kB] Get: 310 http://deb.debian.org/debian unstable/main armhf libmaven-parent-java all 35-1 [6140 B] Get: 311 http://deb.debian.org/debian unstable/main armhf libmaven-shared-utils-java all 3.3.4-1 [138 kB] Get: 312 http://deb.debian.org/debian unstable/main armhf libplexus-cipher-java all 2.0-1 [14.9 kB] Get: 313 http://deb.debian.org/debian unstable/main armhf libplexus-classworlds-java all 2.7.0-1 [50.6 kB] Get: 314 http://deb.debian.org/debian unstable/main armhf libplexus-component-annotations-java all 2.1.1-1 [7660 B] Get: 315 http://deb.debian.org/debian unstable/main armhf libplexus-interpolation-java all 1.26-1 [76.8 kB] Get: 316 http://deb.debian.org/debian unstable/main armhf libplexus-sec-dispatcher-java all 2.0-3 [28.3 kB] Get: 317 http://deb.debian.org/debian unstable/main armhf libgeronimo-interceptor-3.0-spec-java all 1.0.1-4 [8484 B] Get: 318 http://deb.debian.org/debian unstable/main armhf libcdi-api-java all 1.2-3 [54.3 kB] Get: 319 http://deb.debian.org/debian unstable/main armhf libsisu-inject-java all 0.3.4-2 [347 kB] Get: 320 http://deb.debian.org/debian unstable/main armhf libsisu-plexus-java all 0.3.4-3 [181 kB] Get: 321 http://deb.debian.org/debian unstable/main armhf libmaven3-core-java all 3.8.7-2 [1573 kB] Get: 322 http://deb.debian.org/debian unstable/main armhf libplexus-container-default-java all 2.1.1-1 [193 kB] Get: 323 http://deb.debian.org/debian unstable/main armhf libpolyglot-maven-java all 0.8~tobrien+git20120905-10 [74.9 kB] Get: 324 http://deb.debian.org/debian unstable/main armhf librhino-java all 1.7.14-2.1 [1357 kB] Get: 325 http://deb.debian.org/debian unstable/main armhf libsimple-http-java all 4.1.21-1.1 [211 kB] Get: 326 http://deb.debian.org/debian unstable/main armhf libwagon-file-java all 3.5.3-1 [8388 B] Get: 327 http://deb.debian.org/debian unstable/main armhf libjsoup-java all 1.15.3-1 [431 kB] Get: 328 http://deb.debian.org/debian unstable/main armhf libwagon-http-java all 3.5.3-1 [49.5 kB] Get: 329 http://deb.debian.org/debian unstable/main armhf libjcommander-java all 1.71-4 [73.0 kB] Get: 330 http://deb.debian.org/debian unstable/main armhf testng all 6.9.12-4 [795 kB] Get: 331 http://deb.debian.org/debian unstable/main armhf libgradle-plugins-java all 4.4.1-20 [5206 kB] Get: 332 http://deb.debian.org/debian unstable/main armhf gradle all 4.4.1-20 [398 kB] Get: 333 http://deb.debian.org/debian unstable/main armhf maven-repo-helper all 1.11 [142 kB] Get: 334 http://deb.debian.org/debian unstable/main armhf gradle-debian-helper all 2.4 [24.5 kB] Get: 335 http://deb.debian.org/debian unstable/main armhf jarwrapper all 0.79 [10.1 kB] Get: 336 http://deb.debian.org/debian unstable/main armhf javahelper all 0.79 [84.6 kB] Get: 337 http://deb.debian.org/debian unstable/main armhf libbyte-buddy-java all 1.14.13-1 [4709 kB] Get: 338 http://deb.debian.org/debian unstable/main armhf libcommons-math3-java all 3.6.1-3 [2018 kB] Get: 339 http://deb.debian.org/debian unstable/main armhf libjackson2-annotations-java all 2.14.0-1 [68.8 kB] Get: 340 http://deb.debian.org/debian unstable/main armhf libjackson2-core-java all 2.14.1-1 [447 kB] Get: 341 http://deb.debian.org/debian unstable/main armhf libjackson2-databind-java all 2.14.0-1 [1584 kB] Get: 342 http://deb.debian.org/debian unstable/main armhf liblz4-jni armhf 1.8.0-4 [9672 B] Get: 343 http://deb.debian.org/debian unstable/main armhf liblz4-java all 1.8.0-4 [116 kB] Get: 344 http://deb.debian.org/debian unstable/main armhf libmockito-java all 2.23.0-2 [479 kB] Get: 345 http://deb.debian.org/debian unstable/main armhf libredberry-pipe-java all 1.0.0~alpha0-3 [62.7 kB] Get: 346 http://deb.debian.org/debian unstable/main armhf libtrove3-java all 3.0.3-5 [2146 kB] Fetched 286 MB in 8s (37.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpipeline1:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19464 files and directories currently installed.) Preparing to unpack .../libpipeline1_1.5.7-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.7-2) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../binfmt-support_2.2.2-7_armhf.deb ... Unpacking binfmt-support (2.2.2-7) ... Selecting previously unselected package libpython3.11-minimal:armhf. Preparing to unpack .../libpython3.11-minimal_3.11.9-1_armhf.deb ... Unpacking libpython3.11-minimal:armhf (3.11.9-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_armhf.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:armhf (3.11.9-1) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19803 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_armhf.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../5-libreadline8t64_8.2-4_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:armhf. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_armhf.deb ... Unpacking libpython3.11-stdlib:armhf (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_armhf.deb ... Unpacking python3.11 (3.11.9-1) ... 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Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.31-2) ... Setting up libsensors-config (1:3.6.0-9) ... Setting up libdeflate0:armhf (1.20-1) ... Setting up perl-openssl-defaults:armhf (7+b2) ... Setting up libdd-plist-java (1.20-1.1) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up libel-api-java (3.0.0-3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libplexus-component-annotations-java (2.1.1-1) ... Setting up libcom-err2:armhf (1.47.1~rc2-1) ... Setting up file (1:5.45-3) ... Setting up libpolyglot-maven-java (0.8~tobrien+git20120905-10) ... Setting up libfelix-gogo-runtime-java (0.16.2-1.1) ... Setting up libassuan0:armhf (2.5.6-1+b1) ... Setting up libjzlib-java (1.1.3-3) ... Setting up libjbig0:armhf (2.1-6.1+b1) ... Setting up libelf1t64:armhf (0.191-1+b1) ... Setting up libkrb5support0:armhf (1.20.1-6+b1) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Fri May 17 20:00:00 UTC 2024. Universal Time is now: Fri May 17 20:00:00 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgeronimo-annotation-1.3-spec-java (1.3-1) ... Setting up libgeronimo-interceptor-3.0-spec-java (1.0.1-4) ... Setting up libcommons-collections3-java (3.2.2-3) ... Setting up libasound2-data (1.2.11-1) ... Setting up libjsch-java (0.1.55-1) ... Setting up libreflectasm-java (1.11.9+dfsg-4) ... Setting up librhino-java (1.7.14-2.1) ... Setting up autotools-dev (20220109.1) ... Setting up libz3-4:armhf (4.8.12-3.1+b2) ... Setting up libglib2.0-0t64:armhf (2.80.2-1) ... No schema files found: doing nothing. Setting up libbsf-java (1:2.4.0-8) ... Setting up libosgi-annotation-java (8.1.0-1) ... Setting up libjformatstring-java (0.10~20131207-2.1) ... Setting up libasound2t64:armhf (1.2.11-1+b1) ... Setting up libjavaewah-java (1.2.3-1) ... Setting up libjpeg62-turbo:armhf (1:2.1.5-3) ... Setting up libjaxen-java (1.1.6-4) ... Setting up libx11-data (2:1.8.7-1) ... Setting up libnspr4:armhf (2:4.35-1.1+b1) ... Setting up gnupg-l10n (2.2.43-6) ... Setting up libeclipse-jdt-annotation-java (2.2.700+eclipse4.26-2) ... Setting up libjansi-java (2.4.1-2) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:armhf (0.8-13+b2) ... Setting up libxpp3-java (1.1.4c-3) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:armhf (1.14.10-4+b1) ... Setting up libwebsocket-api-java (1.1-2) ... Setting up libfribidi0:armhf (1.0.13-3+b1) ... Setting up libplexus-interpolation-java (1.26-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:armhf (1.6.43-5) ... Setting up libxml-commons-resolver1.1-java (1.2-11) ... Setting up libkryo-java (2.20-7) ... Setting up libxz-java (1.9-1) ... Setting up libio-html-perl (1.004-3) ... Setting up libjna-jni (5.14.0-1) ... Setting up autopoint (0.21-14) ... Setting up binfmt-support (2.2.2-7) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libb-hooks-op-check-perl:armhf (0.22-3+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libfelix-framework-java (4.6.1-2.1) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libpcsclite1:armhf (2.2.1-1) ... Setting up libsensors5:armhf (1:3.6.0-9) ... Setting up libk5crypto3:armhf (1.20.1-6+b1) ... Setting up libhamcrest-java (2.2-2) ... Setting up libglapi-mesa:armhf (24.0.7-1) ... Setting up libbsh-java (2.0b4-20) ... Setting up libjsp-api-java (2.3.4-3) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-6) ... Setting up libvulkan1:armhf (1.3.280.0-1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:armhf (1.4.0-0.1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libgif7:armhf (5.2.2-1) ... Setting up libjarjar-java (1.4+svn142-12) ... Setting up libtrove3-java (3.0.3-5) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.22) ... Setting up libxshmfence1:armhf (1.3-1+b1) ... Setting up libjsoup-java (1.15.3-1) ... Setting up at-spi2-common (2.52.0-1) ... Setting up libtiff6:armhf (4.5.1+git230720-4) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up libxml-commons-external-java (1.4.01-6) ... Setting up libjna-java (5.14.0-1) ... Setting up libxbean-reflect-java (4.5-8) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libjackson2-core-java (2.14.1-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up libthai-data (0.1.29-2) ... Setting up netbase (6.4) ... Setting up libcommons-math3-java (3.6.1-3) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libnative-platform-jni (0.14-6) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libgtk2.0-common (2.24.33-4) ... Setting up libkrb5-3:armhf (1.20.1-6+b1) ... Setting up liblz4-jni (1.8.0-4) ... Setting up libhttpcore-java (4.4.16-1) ... Setting up libbcpg-java (1.77-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libxerces2-java (2.12.2-1) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libantlr-java (2.7.7+dfsg-13) ... Setting up libyaml-snake-java (1.33-2) ... Setting up openssl (3.2.1-3) ... Setting up libbsd0:armhf (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libcdi-api-java (1.2-3) ... Setting up readline-common (8.2-4) ... Setting up libhawtjni-runtime-java (1.18-1) ... Setting up libxml2:armhf (2.9.14+dfsg-1.3+b3) ... Setting up liburi-perl (5.28-1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up dctrl-tools (2.24-3) ... Setting up libjatl-java (0.2.3-1.1) ... Setting up libnet-ssleay-perl:armhf (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-3+b2) ... Setting up libdom4j-java (2.1.4-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libwagon-provider-api-java (3.5.3-1) ... Setting up libnative-platform-java (0.14-6) ... Setting up libosgi-core-java (8.0.0-2) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libxstream-java (1.4.20-1) ... Setting up libnekohtml-java (1.9.22.noko2-0.1) ... Setting up libxdmcp6:armhf (1:1.1.2-3+b1) ... Setting up liblz4-java (1.8.0-4) ... Setting up libxcb1:armhf (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libjetty9-java (9.4.54-1) ... Setting up libxcb-xfixes0:armhf (1.17.0-1) ... Setting up java-wrappers (0.4) ... Setting up libatk1.0-0t64:armhf (2.52.0-1) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libosgi-compendium-java (7.0.0-1) ... Setting up jarwrapper (0.79) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:armhf (1.17.0-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libxcb-glx0:armhf (1.17.0-1) ... Setting up libmaven-parent-java (35-1) ... Setting up libedit2:armhf (3.1-20230828-1+b1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:armhf (0.8-13+b2) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libsisu-inject-java (0.3.4-2) ... Setting up libnss3:armhf (2:3.100-1) ... Setting up libxcb-shm0:armhf (1.17.0-1) ... Setting up libdevel-callchecker-perl:armhf (0.009-1) ... Setting up libcommons-lang-java (2.6-10) ... Setting up libldap-2.5-0:armhf (2.5.17+dfsg-1) ... Setting up libjackson2-databind-java (2.14.0-1) ... Setting up libplexus-cipher-java (2.0-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libxcb-present0:armhf (1.17.0-1) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up libthai0:armhf (0.1.29-2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libsisu-plexus-java (0.3.4-3) ... Setting up libbcel-java (6.5.0-2) ... Setting up libllvm17t64:armhf (1:17.0.6-12) ... Setting up libfreetype6:armhf (2.13.2+dfsg-1+b4) ... Setting up libxcb-sync1:armhf (1.17.0-1) ... Setting up testng (6.9.12-4) ... Setting up shared-mime-info (2.4-4) ... Setting up libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Setting up libcommons-lang3-java (3.14.0-1) ... Setting up libreadline8t64:armhf (8.2-4) ... Setting up libxcb-dri2-0:armhf (1.17.0-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libfelix-resolver-java (1.16.0-1) ... Setting up libdrm2:armhf (2.4.120-2) ... Setting up libjansi-native-java (1.8-2) ... Setting up groff-base (1.23.0-4) ... Setting up libxcb-randr0:armhf (1.17.0-1) ... Setting up libhtml-parser-perl:armhf (3.82-1) ... Setting up gpgconf (2.2.43-6) ... Setting up libjansi1-java (1.18-3) ... Setting up libplexus-sec-dispatcher-java (2.0-3) ... Setting up libx11-6:armhf (2:1.8.7-1+b1) ... Setting up libharfbuzz0b:armhf (8.3.0-2+b1) ... Setting up libgdk-pixbuf-2.0-0:armhf (2.42.12+dfsg-1) ... Setting up libfontconfig1:armhf (2.15.0-1.1) ... Setting up ca-certificates-java (20240118) ... No JRE found. Skipping Java certificates setup. Setting up libwagon-file-java (3.5.3-1) ... Setting up libcommons-codec-java (1.16.0-1) ... Setting up libjline2-java (2.14.6-5) ... Setting up libxcomposite1:armhf (1:0.4.5-1+b1) ... Setting up libavahi-client3:armhf (0.8-13+b2) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.43-6) ... Setting up gnupg-utils (2.2.43-6) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libdrm-amdgpu1:armhf (2.4.120-2) ... Setting up libxcb-dri3-0:armhf (1.17.0-1) ... Setting up gtk-update-icon-cache (3.24.41-4) ... Setting up libx11-xcb1:armhf (2:1.8.7-1+b1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:armhf (2.4.120-2) ... Setting up libfindbugs-java (3.1.0~preview2-3) ... Setting up libxdamage1:armhf (1:1.1.6-1+b1) ... Setting up gpg-agent (2.2.43-6) ... Setting up libxrender1:armhf (1:0.9.10-1.1+b1) ... Setting up libcommons-compress-java (1.25.0-1) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libcommons-io-java (2.16.1-1) ... Setting up libdrm-radeon1:armhf (2.4.120-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libpython3.11-stdlib:armhf (3.11.9-1) ... Setting up libparams-classify-perl:armhf (0.015-2+b3) ... Setting up gpgsm (2.2.43-6) ... Setting up libpango-1.0-0:armhf (1.52.2+ds-1) ... Setting up libgl1-mesa-dri:armhf (24.0.7-1) ... Setting up libxext6:armhf (2:1.3.4-1+b1) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:armhf (1.18.0-3+b1) ... Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up dirmngr (2.2.43-6) ... Setting up libmaven-resolver-java (1.6.3-1) ... Setting up adwaita-icon-theme (46.0-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxfixes3:armhf (1:6.0.0-2+b1) ... Setting up libxinerama1:armhf (2:1.1.4-3+b1) ... Setting up libxrandr2:armhf (2:1.5.4-1) ... Setting up openjdk-17-jre-headless:armhf (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libhttpclient-java (4.5.14-1) ... Setting up libwagon-http-java (3.5.3-1) ... Setting up libmaven-shared-utils-java (3.3.4-1) ... Setting up libpangoft2-1.0-0:armhf (1.52.2+ds-1) ... Setting up libcups2t64:armhf (2.4.7-1.2+b1) ... Setting up libpangocairo-1.0-0:armhf (1.52.2+ds-1) ... Setting up libpython3-stdlib:armhf (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libjgit-java (6.7.0-1) ... Setting up libglx-mesa0:armhf (24.0.7-1) ... Setting up libxi6:armhf (2:1.8.1-1) ... Setting up gpg-wks-client (2.2.43-6) ... Setting up libglx0:armhf (1.7.0-1+b1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libxtst6:armhf (2:1.2.3-1.1+b1) ... Setting up libmoo-perl (2.005005-1) ... Setting up libxcursor1:armhf (1:1.2.1-1+b1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libgl1:armhf (1.7.0-1+b1) ... Setting up libgtk2.0-0t64:armhf (2.24.33-4) ... Setting up gnupg (2.2.43-6) ... Setting up liberror-prone-java (2.18.0-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.23.7) ... Setting up libguava-java (32.0.1-1) ... Setting up javahelper (0.79) ... Setting up libplexus-container-default-java (2.1.1-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libguice-java (4.2.3-2) ... Setting up libmaven3-core-java (3.8.7-2) ... Setting up libbyte-buddy-java (1.14.13-1) ... Setting up libmockito-java (2.23.0-2) ... Processing triggers for libc-bin (2.38-11) ... Processing triggers for ca-certificates-java (20240118) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:BJCA_Global_Root_CA1.pem Adding debian:BJCA_Global_Root_CA2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:CommScope_Public_Trust_ECC_Root-01.pem Adding debian:CommScope_Public_Trust_ECC_Root-02.pem Adding debian:CommScope_Public_Trust_RSA_Root-01.pem Adding debian:CommScope_Public_Trust_RSA_Root-02.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:TrustAsia_Global_Root_CA_G3.pem Adding debian:TrustAsia_Global_Root_CA_G4.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up maven-repo-helper (1.11) ... Setting up antlr (2.7.7+dfsg-13) ... Setting up openjdk-17-jdk-headless:armhf (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up ivy (2.5.2-1) ... Setting up ant (1.10.14-1) ... Setting up junit4 (4.13.2-4) ... Setting up groovy (2.4.21-10) ... update-alternatives: using /usr/share/groovy/bin/groovy to provide /usr/bin/groovy (groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyc to provide /usr/bin/groovyc (groovyc) in auto mode update-alternatives: using /usr/share/groovy/bin/grape to provide /usr/bin/grape (grape) in auto mode update-alternatives: using /usr/share/groovy/bin/startGroovy to provide /usr/bin/startGroovy (startGroovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovysh to provide /usr/bin/groovysh (groovysh) in auto mode update-alternatives: using /usr/share/groovy/bin/java2groovy to provide /usr/bin/java2groovy (java2groovy) in auto mode update-alternatives: using /usr/share/groovy/bin/groovyConsole to provide /usr/bin/groovyConsole (groovyConsole) in auto mode update-alternatives: using /usr/share/groovy/bin/groovydoc to provide /usr/bin/groovydoc (groovydoc) in auto mode Setting up default-jre-headless (2:1.17-75) ... Setting up openjdk-17-jre:armhf (17.0.11+9-1) ... Setting up default-jre (2:1.17-75) ... Setting up openjdk-17-jdk:armhf (17.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ant-optional (1.10.14-1) ... Setting up bnd (5.0.1-5) ... Setting up default-jdk-headless (2:1.17-75) ... Setting up libgradle-core-java (4.4.1-20) ... Setting up libgradle-plugins-java (4.4.1-20) ... Setting up gradle (4.4.1-20) ... Setting up default-jdk (2:1.17-75) ... Setting up gradle-debian-helper (2.4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for ca-certificates-java (20240118) ... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/milib-2.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../milib_2.2.0+dfsg-1_source.changes dpkg-buildpackage: info: source package milib dpkg-buildpackage: info: source version 2.2.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Pierre Gruet dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with javahelper --with maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/milib-2.2.0+dfsg' dh_auto_clean # Clearing the build.gradle file we provide rm build.gradle rm: cannot remove 'build.gradle': No such file or directory make[1]: [debian/rules:11: override_dh_auto_clean] Error 1 (ignored) make[1]: Leaving directory '/build/reproducible-path/milib-2.2.0+dfsg' jh_clean dh_clean debian/rules binary dh binary --with javahelper --with maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/milib-2.2.0+dfsg' # Adding the upstream version number (without +dfsg) to the build.gradle file # we got by patching build.gradle.kts sed "s/\(^group.*\)/\1\nversion = '2.2.0+dfsg'/ ; s/\+dfsg[[:digit:]]*//" build.gradle.kts > build.gradle dh_auto_configure make[1]: Leaving directory '/build/reproducible-path/milib-2.2.0+dfsg' jh_linkjars dh_auto_build mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=milib -Dfile.encoding=UTF-8 --parallel --max-workers=5 jar openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 9.143 secs. The client will now receive all logging from the daemon (pid: 15719). The daemon log file: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1/daemon-15719.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 5 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@10fa1cb Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@10fa1cb Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4f5b18 Starting Build Compiling initialization script '/build/reproducible-path/milib-2.2.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. Creating new cache for metadata-1.1/results, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@c42d94 Compiling initialization script '/build/reproducible-path/milib-2.2.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Settings evaluated using settings file '/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'milib' instead of the name of the root directory 'milib-2.2.0+dfsg' Projects loaded. Root project using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Included projects: [root project 'milib'] Keep-alive timer started Adding Debian repository to project 'milib' Parallel execution is an incubating feature. Evaluating root project 'milib' using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Compiling build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle' using SubsetScriptTransformer. Compiling build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle' using BuildScriptTransformer. Adding Maven pom generation to project 'milib' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : Creating new cache for annotation-processors, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@690555 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4f5b18 Creating new cache for taskHistory, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6f6a4f Creating new cache for outputFiles, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@451c61 :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.043 secs. Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@f95ca7 Loading the Maven rules... Replacing org.apache.commons:commons-math3:jar:3.6.1 -> org.apache.commons:commons-math3:jar:debian Replacing cc.redberry:pipe:jar:1.3.0 -> cc.redberry:pipe:jar:1.0.0-alpha0 Replacing com.fasterxml.jackson:jackson-bom:jar:2.14.0 -> com.fasterxml.jackson:jackson-bom:jar:debian Passing through com.fasterxml.jackson:jackson-parent:jar:debian Passing through com.fasterxml:oss-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-databind:jar:2.x Passing through com.fasterxml.jackson:jackson-base:jar:debian Passing through com.fasterxml.jackson:jackson-bom:jar:debian Replacing org.apache.commons:commons-compress:jar:1.21 -> org.apache.commons:commons-compress:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing commons-io:commons-io:jar:2.11.0 -> commons-io:commons-io:jar:debian Replacing org.lz4:lz4-java:jar:1.8.0 -> org.lz4:lz4-java:jar:debian Replacing com.beust:jcommander:jar:1.72 -> com.beust:jcommander:jar:debian Replacing net.sf.trove4j:trove4j:jar:3.0.3 -> net.sf.trove4j:trove4j:jar:debian Replacing com.google.guava:guava:jar:31.1-jre -> com.google.guava:guava:jar:debian Passing through com.google.guava:guava-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-annotations:jar:2.x Passing through com.fasterxml.jackson.core:jackson-core:jar:2.x Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Malformed jar [jackson-databind-2.x.jar] found on classpath. Gradle 5.0 will no longer allow malformed jars on a classpath. at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashMalformedZip(AbstractClasspathSnapshotBuilder.java:120) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hashJarContents(AbstractClasspathSnapshotBuilder.java:115) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder$JarHasher.hash(AbstractClasspathSnapshotBuilder.java:93) at org.gradle.api.internal.changedetection.state.ResourceSnapshotterCacheService.hashFile(ResourceSnapshotterCacheService.java:44) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder.visitJar(AbstractClasspathSnapshotBuilder.java:83) at org.gradle.api.internal.changedetection.state.AbstractClasspathSnapshotBuilder.visitFileSnapshot(AbstractClasspathSnapshotBuilder.java:76) at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter$FileCollectionVisitorImpl.visitCollection(AbstractFileCollectionSnapshotter.java:77) at org.gradle.api.internal.file.AbstractFileCollection.visitRootElements(AbstractFileCollection.java:234) at org.gradle.api.internal.file.CompositeFileCollection.visitRootElements(CompositeFileCollection.java:185) at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter.snapshot(AbstractFileCollectionSnapshotter.java:53) at org.gradle.api.internal.changedetection.state.DefaultCompileClasspathSnapshotter.snapshot(DefaultCompileClasspathSnapshotter.java:38) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.snapshotTaskFiles(CacheBackedTaskHistoryRepository.java:331) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.createExecution(CacheBackedTaskHistoryRepository.java:154) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.access$100(CacheBackedTaskHistoryRepository.java:61) at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository$1.getCurrentExecution(CacheBackedTaskHistoryRepository.java:114) at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.getStates(DefaultTaskArtifactStateRepository.java:201) at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.isUpToDate(DefaultTaskArtifactStateRepository.java:86) at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:53) at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54) at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60) at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97) at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87) at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52) at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54) at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43) at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336) at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328) at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199) at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241) at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626) at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581) at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98) at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63) at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1136) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:635) at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55) at java.base/java.lang.Thread.run(Thread.java:840) Up-to-date check for task ':compileJava' took 39.355 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. :compileJava (Thread[Task worker for ':',5,main]) completed. Took 2 mins 37.299 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Up-to-date check for task ':processResources' took 0.127 secs. It is not up-to-date because: No history is available. :processResources (Thread[Task worker for ':',5,main]) completed. Took 0.38 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes (Thread[Task worker for ':',5,main]) completed. Took 0.007 secs. :debianMavenPom (Thread[Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.01 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/milib-2.2.0+dfsg/build/debian/milib.pom :debianMavenPom (Thread[Task worker for ':',5,main]) completed. Took 0.638 secs. :jar (Thread[Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. Up-to-date check for task ':jar' took 0.223 secs. It is not up-to-date because: No history is available. :jar (Thread[Task worker for ':',5,main]) completed. Took 2.364 secs. BUILD SUCCESSFUL in 3m 56s 4 actionable tasks: 4 executed dh_auto_test mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=milib -Dfile.encoding=UTF-8 --parallel --max-workers=5 test openjdk version "17.0.11" 2024-04-16 OpenJDK Runtime Environment (build 17.0.11+9-Debian-1) OpenJDK Server VM (build 17.0.11+9-Debian-1, mixed mode, sharing) Initialized native services in: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/native To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' An attempt to start the daemon took 8.333 secs. The client will now receive all logging from the daemon (pid: 22174). The daemon log file: /build/reproducible-path/milib-2.2.0+dfsg/.gradle/daemon/4.4.1/daemon-22174.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 5 worker leases. Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@15e5a47 Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@15e5a47 Creating new cache for fileHashes, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@38a3d1 Starting Build Creating new cache for metadata-1.1/results, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@cbc92e Settings evaluated using settings file '/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle'. Settings file not found (/build/reproducible-path/milib-2.2.0+dfsg/settings.gradle) Root project name not defined in settings.gradle, defaulting to 'milib' instead of the name of the root directory 'milib-2.2.0+dfsg' Projects loaded. Root project using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Included projects: [root project 'milib'] Keep-alive timer started Adding Debian repository to project 'milib' Parallel execution is an incubating feature. Evaluating root project 'milib' using build file '/build/reproducible-path/milib-2.2.0+dfsg/build.gradle'. Adding Maven pom generation to project 'milib' Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : Creating new cache for annotation-processors, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@1596257 Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] Creating new cache for resourceHashesCache, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@38a3d1 Creating new cache for taskHistory, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@750b4e Creating new cache for outputFiles, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@12ba3df :compileJava (Thread[Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.043 secs. Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/milib-2.2.0+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@17d0a6a Loading the Maven rules... Replacing org.apache.commons:commons-math3:jar:3.6.1 -> org.apache.commons:commons-math3:jar:debian Replacing cc.redberry:pipe:jar:1.3.0 -> cc.redberry:pipe:jar:1.0.0-alpha0 Replacing com.fasterxml.jackson:jackson-bom:jar:2.14.0 -> com.fasterxml.jackson:jackson-bom:jar:debian Passing through com.fasterxml.jackson:jackson-parent:jar:debian Passing through com.fasterxml:oss-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-databind:jar:2.x Passing through com.fasterxml.jackson:jackson-base:jar:debian Passing through com.fasterxml.jackson:jackson-bom:jar:debian Replacing org.apache.commons:commons-compress:jar:1.21 -> org.apache.commons:commons-compress:jar:debian Passing through org.apache.commons:commons-parent:jar:debian Passing through org.apache:apache:jar:debian Replacing commons-io:commons-io:jar:2.11.0 -> commons-io:commons-io:jar:debian Replacing org.lz4:lz4-java:jar:1.8.0 -> org.lz4:lz4-java:jar:debian Replacing com.beust:jcommander:jar:1.72 -> com.beust:jcommander:jar:debian Replacing net.sf.trove4j:trove4j:jar:3.0.3 -> net.sf.trove4j:trove4j:jar:debian Replacing com.google.guava:guava:jar:31.1-jre -> com.google.guava:guava:jar:debian Passing through com.google.guava:guava-parent:jar:debian Passing through com.fasterxml.jackson.core:jackson-annotations:jar:2.x Passing through com.fasterxml.jackson.core:jackson-core:jar:2.x Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Skipping task ':compileJava' as it is up-to-date (took 9.249 secs). :compileJava UP-TO-DATE :compileJava (Thread[Task worker for ':',5,main]) completed. Took 9.544 secs. :processResources (Thread[Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. Skipping task ':processResources' as it is up-to-date (took 0.115 secs). :processResources UP-TO-DATE :processResources (Thread[Task worker for ':',5,main]) completed. Took 0.148 secs. :classes (Thread[Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE :classes (Thread[Task worker for ':',5,main]) completed. Took 0.009 secs. :compileTestJava (Thread[Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. Replacing junit:junit:jar:4.13.2 -> junit:junit:jar:4.x Replacing org.mockito:mockito-all:jar:1.10.19 -> org.mockito:mockito-all:jar:debian org.mockito:mockito-all:debian is relocated to org.mockito:mockito-core:debian. Please update your dependencies. Passing through org.hamcrest:hamcrest:jar:debian Passing through org.mockito:mockito-core:jar:debian Passing through net.bytebuddy:byte-buddy:jar:debian Passing through net.bytebuddy:byte-buddy-parent:jar:debian Passing through net.bytebuddy:byte-buddy-agent:jar:debian Passing through org.objenesis:objenesis:jar:debian Passing through org.objenesis:objenesis-parent:jar:debian Passing through net.bytebuddy:byte-buddy-dep:jar:debian Passing through org.ow2.asm:asm:jar:debian Passing through org.ow2.asm:asm-commons:jar:debian Up-to-date check for task ':compileTestJava' took 32.504 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. :compileTestJava (Thread[Task worker for ':',5,main]) completed. Took 1 mins 19.656 secs. :processTestResources (Thread[Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. Up-to-date check for task ':processTestResources' took 0.172 secs. It is not up-to-date because: No history is available. :processTestResources (Thread[Task worker for ':',5,main]) completed. Took 0.432 secs. :testClasses (Thread[Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. :testClasses (Thread[Task worker for ':',5,main]) completed. Took 0.006 secs. :test (Thread[Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Up-to-date check for task ':test' took 7.541 secs. It is not up-to-date because: No history is available. Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/milib-2.2.0+dfsg Command: /usr/lib/jvm/java-17-openjdk-armhf/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath14842924770810497216txt -Xms1024m -Xmx2048m -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. com.milaboratory.primitivio.blocks.PrimitivOBlocksTest > benchmark1 SKIPPED com.milaboratory.primitivio.blocks.PrimitivOBlocksTest > test1 STANDARD_OUT Pending / IO / Serde: 1 / 0 / 3 Pending / IO / Serde: 1 / 0 / 3 ================== High compression: false Concurrency: 4 File size: 6799510 Write time: 3.96s O. Stats: Wall clock time: 3.98s Total CPU time: 8.72s User wait time: 3.28s Serialization time: 7.17s (82.24%) Checksum calculation time: 954.87ms (10.95%) Compression time: 487.76ms (5.59%) Total IO delay: 411.21ms Concurrency overhead: 282.18ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.17%) IO speed: 15.78MiB/s Concurrency adjusted uncompressed speed: 7.19MiB/s Actual uncompressed speed: 4.64MiB/s Actual speed: 1.63MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 I. Stats 1: Wall clock time: 2.33s Total CPU time: 3.7s Serialization time: 2.85s (77.03%) Checksum calculation time: 260.27ms (7.03%) Compression time: 577.28ms (15.58%) Total IO delay: 224.41ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.17%) IO speed: 28.95MiB/s Concurrency adjusted uncompressed speed: 18.77MiB/s Actual uncompressed speed: 7.9MiB/s Actual speed: 2.78MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 I. Stats 2: Wall clock time: 3.91s Total CPU time: 5.14s Serialization time: 3.48s (67.61%) Checksum calculation time: 543.12ms (10.56%) Compression time: 1.1s (21.3%) Total IO delay: 465.73ms Input size: 12.97MiB Decompressed size: 36.87MiB (compression = 35.17%) IO speed: 27.89MiB/s Concurrency adjusted uncompressed speed: 26.32MiB/s Actual uncompressed speed: 9.44MiB/s Actual speed: 3.32MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 124 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 ================== High compression: false Concurrency: 4 File size: 6791878 Write time: 1.38s O. Stats: Wall clock time: 1.38s Total CPU time: 1.89s User wait time: 1.09s Serialization time: 1.13s (60.03%) Checksum calculation time: 231.53ms (12.27%) Compression time: 492.17ms (26.09%) Total IO delay: 158.52ms Concurrency overhead: 93.91ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.13%) IO speed: 41MiB/s Concurrency adjusted uncompressed speed: 30.47MiB/s Actual uncompressed speed: 13.32MiB/s Actual speed: 4.68MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 1: Wall clock time: 1.32s Total CPU time: 1.7s Serialization time: 787.64ms (46.31%) Checksum calculation time: 312.25ms (18.36%) Compression time: 597.92ms (35.15%) Total IO delay: 98.65ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.13%) IO speed: 66.09MiB/s Concurrency adjusted uncompressed speed: 41.06MiB/s Actual uncompressed speed: 13.97MiB/s Actual speed: 4.91MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 I. Stats 2: Wall clock time: 3.08s Total CPU time: 3.54s Serialization time: 1.7s (47.94%) Checksum calculation time: 574.25ms (16.23%) Compression time: 1.25s (35.41%) Total IO delay: 214.11ms Input size: 12.95MiB Decompressed size: 36.87MiB (compression = 35.13%) IO speed: 60.53MiB/s Concurrency adjusted uncompressed speed: 39.31MiB/s Actual uncompressed speed: 11.99MiB/s Actual speed: 4.21MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 40 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 ================== High compression: false Concurrency: 1 File size: 6799510 Write time: 1.36s O. Stats: Wall clock time: 1.37s Total CPU time: 1.04s User wait time: 1.24s Serialization time: 459.6ms (44.2%) Checksum calculation time: 142.29ms (13.69%) Compression time: 371.82ms (35.76%) Total IO delay: 150.07ms Concurrency overhead: 41.47ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.17%) IO speed: 43.23MiB/s Concurrency adjusted uncompressed speed: 14.98MiB/s Actual uncompressed speed: 13.48MiB/s Actual speed: 4.74MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! Pending / IO / Serde: 2 / 1 / 0 I. Stats 1: Wall clock time: 1.16s Total CPU time: 1.44s Serialization time: 603.35ms (41.94%) Checksum calculation time: 294.81ms (20.49%) Compression time: 515.78ms (35.85%) Total IO delay: 320.99ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.17%) IO speed: 20.26MiB/s Concurrency adjusted uncompressed speed: 10.48MiB/s Actual uncompressed speed: 15.96MiB/s Actual speed: 5.61MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 62 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 I. Stats 2: Wall clock time: 2.31s Total CPU time: 3.18s Serialization time: 1.37s (43.23%) Checksum calculation time: 589.27ms (18.55%) Compression time: 1.16s (36.48%) Total IO delay: 549.87ms Input size: 12.97MiB Decompressed size: 36.87MiB (compression = 35.17%) IO speed: 23.62MiB/s Concurrency adjusted uncompressed speed: 9.9MiB/s Actual uncompressed speed: 16MiB/s Actual speed: 5.63MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 124 (~107.1KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 ================== High compression: false Concurrency: 1 File size: 6791878 Write time: 1.24s O. Stats: Wall clock time: 1.25s Total CPU time: 962.36ms User wait time: 1.1s Serialization time: 439.25ms (45.64%) Checksum calculation time: 158.59ms (16.48%) Compression time: 318.18ms (33.06%) Total IO delay: 119.42ms Concurrency overhead: 7.75ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 6.48MiB (~748B per object; compression = 35.13%) IO speed: 54.43MiB/s Concurrency adjusted uncompressed speed: 16.93MiB/s Actual uncompressed speed: 14.79MiB/s Actual speed: 5.19MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! Pending / IO / Serde: 0 / 0 / 0 I. Stats 1: Wall clock time: 1.09s Total CPU time: 1.44s Serialization time: 543.58ms (37.71%) Checksum calculation time: 266.81ms (18.51%) Compression time: 628.08ms (43.58%) Total IO delay: 69.24ms Input size: 6.48MiB Decompressed size: 18.44MiB (compression = 35.13%) IO speed: 93.87MiB/s Concurrency adjusted uncompressed speed: 12.21MiB/s Actual uncompressed speed: 16.95MiB/s Actual speed: 5.95MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 20 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 I. Stats 2: Wall clock time: 2.55s Total CPU time: 3s Serialization time: 1.08s (36.03%) Checksum calculation time: 556.96ms (18.54%) Compression time: 1.36s (45.22%) Total IO delay: 161ms Input size: 12.95MiB Decompressed size: 36.87MiB (compression = 35.13%) IO speed: 80.46MiB/s Concurrency adjusted uncompressed speed: 11.65MiB/s Actual uncompressed speed: 14.45MiB/s Actual speed: 5.08MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 748B Blocks: 40 (~331.63KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 1 / 0 / 3 Pending / IO / Serde: 0 / 0 / 4 Pending / IO / Serde: 1 / 0 / 3 Pending / IO / Serde: 3 / 0 / 1 Pending / IO / Serde: 1 / 0 / 3 Pending / IO / Serde: 2 / 0 / 2 Pending / IO / Serde: 0 / 0 / 4 Pending / IO / Serde: 0 / 0 / 4 Pending / IO / Serde: 1 / 0 / 2 ================== High compression: true Concurrency: 4 File size: 4156299 Write time: 18.06s O. Stats: Wall clock time: 18.06s Total CPU time: 48.16s User wait time: 17.15s Serialization time: 645.89ms (1.34%) Checksum calculation time: 279.87ms (0.58%) Compression time: 47.17s (97.94%) Total IO delay: 229.44ms Concurrency overhead: 144.87ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.96MiB (~457B per object; compression = 21.5%) IO speed: 17.31MiB/s Concurrency adjusted uncompressed speed: 1.51MiB/s Actual uncompressed speed: 1.02MiB/s Actual speed: 224.73KiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 1: Wall clock time: 703.91ms Total CPU time: 969.8ms Serialization time: 347.14ms (35.8%) Checksum calculation time: 249.37ms (25.71%) Compression time: 361.55ms (37.28%) Total IO delay: 220.86ms Input size: 3.96MiB Decompressed size: 18.44MiB (compression = 21.5%) IO speed: 18.02MiB/s Concurrency adjusted uncompressed speed: 62.08MiB/s Actual uncompressed speed: 26.23MiB/s Actual speed: 5.64MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 I. Stats 2: Wall clock time: 1.73s Total CPU time: 2.11s Serialization time: 735.24ms (34.85%) Checksum calculation time: 532.6ms (25.24%) Compression time: 818.2ms (38.78%) Total IO delay: 449.48ms Input size: 7.93MiB Decompressed size: 36.87MiB (compression = 21.5%) IO speed: 17.66MiB/s Concurrency adjusted uncompressed speed: 57.71MiB/s Actual uncompressed speed: 21.3MiB/s Actual speed: 4.58MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 124 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 2 / 0 / 2 Pending / IO / Serde: 2 / 0 / 2 Pending / IO / Serde: 3 / 0 / 1 Pending / IO / Serde: 2 / 0 / 2 Pending / IO / Serde: 2 / 0 / 2 Pending / IO / Serde: 2 / 0 / 2 Pending / IO / Serde: 2 / 0 / 2 Pending / IO / Serde: 3 / 0 / 1 Pending / IO / Serde: 3 / 0 / 1 Pending / IO / Serde: 3 / 0 / 1 Pending / IO / Serde: 3 / 0 / 1 ================== High compression: true Concurrency: 4 File size: 4098671 Write time: 23.46s O. Stats: Wall clock time: 23.47s Total CPU time: 39.1s User wait time: 22.05s Serialization time: 383.58ms (0.98%) Checksum calculation time: 206.99ms (0.53%) Compression time: 38.47s (98.39%) Total IO delay: 93.93ms Concurrency overhead: 14.4ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.91MiB (~451B per object; compression = 21.2%) IO speed: 42.03MiB/s Concurrency adjusted uncompressed speed: 1.88MiB/s Actual uncompressed speed: 804.41KiB/s Actual speed: 170.54KiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 0 I. Stats 1: Wall clock time: 608.82ms Total CPU time: 622.15ms Serialization time: 173.74ms (27.93%) Checksum calculation time: 153.3ms (24.64%) Compression time: 293.74ms (47.21%) Total IO delay: 42.16ms Input size: 3.91MiB Decompressed size: 18.44MiB (compression = 21.2%) IO speed: 93.07MiB/s Concurrency adjusted uncompressed speed: 111.07MiB/s Actual uncompressed speed: 30.32MiB/s Actual speed: 6.43MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 1.29s Total CPU time: 1.24s Serialization time: 341.17ms (27.52%) Checksum calculation time: 301.87ms (24.35%) Compression time: 593.66ms (47.89%) Total IO delay: 88.33ms Input size: 7.82MiB Decompressed size: 36.87MiB (compression = 21.2%) IO speed: 88.84MiB/s Concurrency adjusted uncompressed speed: 111.07MiB/s Actual uncompressed speed: 28.54MiB/s Actual speed: 6.05MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 40 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 ================== High compression: true Concurrency: 1 File size: 4156299 Write time: 23.97s O. Stats: Wall clock time: 23.97s Total CPU time: 23.77s User wait time: 23.89s Serialization time: 260.83ms (1.1%) Checksum calculation time: 144.97ms (0.61%) Compression time: 23.34s (98.22%) Total IO delay: 104.16ms Concurrency overhead: 14.41ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.96MiB (~457B per object; compression = 21.5%) IO speed: 38.11MiB/s Concurrency adjusted uncompressed speed: 790.46KiB/s Actual uncompressed speed: 787.63KiB/s Actual speed: 169.33KiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! I. Stats 1: Wall clock time: 530.61ms Total CPU time: 663.27ms Serialization time: 206.34ms (31.11%) Checksum calculation time: 157.86ms (23.8%) Compression time: 293.5ms (44.25%) Total IO delay: 65.77ms Input size: 3.96MiB Decompressed size: 18.44MiB (compression = 21.5%) IO speed: 60.98MiB/s Concurrency adjusted uncompressed speed: 25.29MiB/s Actual uncompressed speed: 34.79MiB/s Actual speed: 7.48MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 62 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 1.16s Total CPU time: 1.33s Serialization time: 417.85ms (31.45%) Checksum calculation time: 313.37ms (23.59%) Compression time: 581.45ms (43.77%) Total IO delay: 145.35ms Input size: 7.93MiB Decompressed size: 36.87MiB (compression = 21.5%) IO speed: 54.67MiB/s Concurrency adjusted uncompressed speed: 25.03MiB/s Actual uncompressed speed: 31.9MiB/s Actual speed: 6.86MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 457B Blocks: 124 (~65.47KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 Pending / IO / Serde: 0 / 0 / 1 ================== High compression: true Concurrency: 1 File size: 4098671 Write time: 24.11s O. Stats: Wall clock time: 24.12s Total CPU time: 23.97s User wait time: 24.04s Serialization time: 248.88ms (1.04%) Checksum calculation time: 125.78ms (0.52%) Compression time: 23.58s (98.36%) Total IO delay: 66.52ms Concurrency overhead: 4.22ms Uncompressed size: 18.44MiB (~2.08KiB per object) Output size: 3.91MiB (~451B per object; compression = 21.2%) IO speed: 59.22MiB/s Concurrency adjusted uncompressed speed: 785.23KiB/s Actual uncompressed speed: 782.79KiB/s Actual speed: 165.96KiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 Checksum ok! I. Stats 1: Wall clock time: 536.75ms Total CPU time: 587.62ms Serialization time: 152.76ms (26%) Checksum calculation time: 147.2ms (25.05%) Compression time: 286ms (48.67%) Total IO delay: 36.05ms Input size: 3.91MiB Decompressed size: 18.44MiB (compression = 21.2%) IO speed: 108.58MiB/s Concurrency adjusted uncompressed speed: 29.59MiB/s Actual uncompressed speed: 34.4MiB/s Actual speed: 7.29MiB/s Objects: 9079 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 20 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 I. Stats 2: Wall clock time: 1.18s Total CPU time: 1.2s Serialization time: 313.26ms (26.01%) Checksum calculation time: 303.18ms (25.17%) Compression time: 584.55ms (48.54%) Total IO delay: 76.32ms Input size: 7.82MiB Decompressed size: 36.87MiB (compression = 21.2%) IO speed: 102.86MiB/s Concurrency adjusted uncompressed speed: 28.81MiB/s Actual uncompressed speed: 31.17MiB/s Actual speed: 6.61MiB/s Objects: 18158 Average object size uncompressed: 2.08KiB Average object size compressed: 451B Blocks: 40 (~200.13KiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 com.milaboratory.primitivio.blocks.PrimitivOBlocksTest > bigBlocks STANDARD_OUT Pending / IO / Serde / Objs: 0 / 0 / 1 / 0 Pending / IO / Serde / Objs: 0 / 1 / 1 / 1000 Pending / IO / Serde / Objs: 0 / 1 / 1 / 2000 Pending / IO / Serde / Objs: 1 / 1 / 0 / 4000 Pending / IO / Serde / Objs: 0 / 1 / 1 / 5000 Pending / IO / Serde / Objs: 0 / 0 / 1 / 6000 Pending / IO / Serde / Objs: 0 / 1 / 1 / 8000 Pending / IO / Serde / Objs: 0 / 1 / 1 / 9000 Pending / IO / Serde / Objs: 0 / 0 / 1 / 10000 Pending / IO / Serde / Objs: 0 / 0 / 1 / 11000 Pending / IO / Serde / Objs: 0 / 1 / 1 / 13000 Pending / IO / Serde / Objs: 0 / 0 / 1 / 14000 Pending / IO / Serde / Objs: 0 / 1 / 1 / 15000 Pending / IO / Serde / Objs: 0 / 0 / 1 / 16000 Pending / IO / Serde / Objs: 0 / 0 / 1 / 17000 Pending / IO / Serde / Objs: 0 / 0 / 1 / 18000 Pending / IO / Serde / Objs: 1 / 0 / 1 / 19000 O. Stats: Wall clock time: 35.21s Total CPU time: 27.37s User wait time: 558.54us Serialization time: 4.75s (17.34%) Checksum calculation time: 14.55s (53.15%) Compression time: 3.5s (12.78%) Total IO delay: 21.61s Concurrency overhead: 19.56ms Uncompressed size: 1.86GiB (~97.66KiB per object) Output size: 1.86GiB (~97.66KiB per object; compression = 100%) IO speed: 88.27MiB/s Concurrency adjusted uncompressed speed: 310.56MiB/s Actual uncompressed speed: 54.18MiB/s Actual speed: 54.18MiB/s Objects: 20000 Average object size uncompressed: 97.66KiB Average object size compressed: 97.66KiB Blocks: 20 (~95.37MiB each) Ongoing and pending ops (Serde / IO / Pending): 0 / 0 / 0 com.milaboratory.util.IntCombinationsTest > test1 STANDARD_OUT [0, 1] [0, 2] [1, 2] com.milaboratory.util.RemoveActionTest > test1 STANDARD_OUT /tmp/milib_57df84f9852ce8d7738016aec3d58fb04b3e20da3204330060324933045 com.milaboratory.util.RemoveActionTest > test2 STANDARD_OUT /tmp/milib_edd7a3dfb1745a2959c8b58d06aa28bee05262aa3696775241197821344.tmp com.milaboratory.util.VersionInfoTest > test3 SKIPPED com.milaboratory.util.ByteStringTest > testSpeed1 STANDARD_OUT Time per hash: 1.22us Addition to hash set (per operation): 3.28us Hash set removal (per operation): 1.79us b com.milaboratory.util.sorting.HashSorterTest > testSingleton STANDARD_OUT /tmp/milib_37dc4afa1aaa7bdebe0c9dc469030455cf21f280191412631343915194 timeInCollate: 43.59s timeInCollatorInit: 30.73s timeAwaitingO: 12ms timeAwaitingI: 5.23s timeInFinalSorting1: 0ns timeInFinalSorting2: 125.2ms timeInFinalSorting3: 493.32ms /2S (5|27|32): objs=50000 size=3.19MiB com.milaboratory.util.sorting.HashSorterTest > test1 STANDARD_OUT /tmp/milib_8bec0268d50e8ce28174ef31ccc3b192783bd44c18018545032853239805 timeInCollate: 1.71m timeInCollatorInit: 5.17s timeAwaitingO: 5.72s timeAwaitingI: 23.8s timeInFinalSorting1: 17.19s timeInFinalSorting2: 13.96s timeInFinalSorting3: 5.42s /0N (5|27|32): objs=158058 size=9.01MiB /1N (5|27|32): objs=156232 size=8.71MiB /2N (5|27|32): objs=155067 size=9.1MiB /3N (5|27|32): objs=150140 size=8.02MiB /4N (5|27|32): objs=153080 size=8.45MiB /5N (5|27|32): objs=163008 size=9.36MiB /6N (5|27|32): objs=153357 size=8.45MiB /7N (5|27|32): objs=158403 size=8.95MiB /8N (5|27|32): objs=156553 size=8.85MiB /9N (5|27|32): objs=153207 size=8.68MiB /10N (5|27|32): objs=153978 size=8.62MiB /11N (5|27|32): objs=157249 size=8.89MiB /12N (5|27|32): objs=159224 size=8.96MiB /13N (5|27|32): objs=145947 size=8.17MiB /14N (5|27|32): objs=156943 size=8.73MiB /15N (5|27|32): objs=155990 size=8.86MiB /16N (5|27|32): objs=158455 size=8.95MiB /17N (5|27|32): objs=159771 size=8.96MiB /18N (5|27|32): objs=166828 size=9.48MiB /19N (5|27|32): objs=160002 size=8.79MiB /20N (5|27|32): objs=161075 size=9.14MiB /21N (5|27|32): objs=150001 size=8.29MiB /22N (5|27|32): objs=159313 size=8.77MiB /23N (5|27|32): objs=159191 size=8.91MiB /24N (5|27|32): objs=149906 size=8.37MiB /25N (5|27|32): objs=160684 size=9.11MiB /26N (5|27|32): objs=161869 size=9.18MiB /27N (5|27|32): objs=151661 size=8.52MiB /28N (5|27|32): objs=150018 size=8.29MiB /29N (5|27|32): objs=148303 size=8.16MiB /30N (5|27|32): objs=155210 size=8.8MiB /31N (5|27|32): objs=161277 size=9.32MiB /0/0N (2|25|36): objs=39853 size=942.7KiB /0/1N (2|25|36): objs=42100 size=1.02MiB /0/2N (2|25|36): objs=27599 size=404.9KiB /0/3S (2|25|36): objs=160 size=127B /0/4N (2|25|36): objs=2612 size=10.76KiB /0/5S (2|25|36): objs=141 size=231B /0/6N (2|25|36): objs=1506 size=6.13KiB /0/7S (2|25|36): objs=152 size=210B /0/9S (2|25|36): objs=129 size=293B /0/10N (2|25|36): objs=2328 size=10.16KiB /0/11N (2|25|36): objs=8964 size=48.78KiB /0/12S (2|25|36): objs=142 size=104B /0/13N (2|25|36): objs=3831 size=16.73KiB /0/14S (2|25|36): objs=158 size=155B /0/15N (2|25|36): objs=2224 size=9.39KiB /0/16S (2|25|36): objs=154 size=115B /0/18S (2|25|36): objs=159 size=121B /0/19N (2|25|36): objs=4287 size=19.7KiB /0/20S (2|25|36): objs=136 size=184B /0/21N (2|25|36): objs=1709 size=6.96KiB /0/22S (2|25|36): objs=169 size=225B /0/23N (2|25|36): objs=312 size=842B /0/24S (2|25|36): objs=176 size=274B /0/25N (2|25|36): objs=5939 size=26.04KiB /0/26S (2|25|36): objs=138 size=106B /0/27N (2|25|36): objs=3227 size=13.69KiB /0/28S (2|25|36): objs=150 size=324B /0/29N (2|25|36): objs=1878 size=7.61KiB /0/30S (2|25|36): objs=169 size=130B /0/31N (2|25|36): objs=5198 size=24.17KiB /0/32S (2|25|36): objs=158 size=126B /0/33N (2|25|36): objs=1085 size=4.12KiB /0/34S (2|25|36): objs=166 size=94B /0/35N (2|25|36): objs=949 size=3.61KiB /1/0N (2|25|36): objs=39501 size=842.6KiB /1/1N (2|25|36): objs=37629 size=752.03KiB /1/2N (2|25|36): objs=40807 size=1.01MiB /1/3N (2|25|36): objs=11701 size=65.76KiB /1/4S (2|25|36): objs=169 size=105B /1/5N (2|25|36): objs=1631 size=6.51KiB /1/6S (2|25|36): objs=144 size=326B /1/7N (2|25|36): objs=1851 size=7.51KiB /1/8S (2|25|36): objs=150 size=302B /1/9N (2|25|36): objs=1051 size=4.06KiB /1/10S (2|25|36): objs=151 size=269B /1/11N (2|25|36): objs=1878 size=7.71KiB /1/12S (2|25|36): objs=157 size=300B /1/13N (2|25|36): objs=1968 size=8.27KiB /1/14S (2|25|36): objs=168 size=164B /1/15N (2|25|36): objs=558 size=2.04KiB /1/16S (2|25|36): objs=129 size=146B /1/17N (2|25|36): objs=626 size=2.28KiB /1/18S (2|25|36): objs=147 size=300B /1/20S (2|25|36): objs=128 size=316B /1/21N (2|25|36): objs=6203 size=27.76KiB /1/22S (2|25|36): objs=148 size=267B /1/23N (2|25|36): objs=942 size=3.64KiB /1/24S (2|25|36): objs=151 size=91B /1/25S (2|25|36): objs=131 size=235B /1/26S (2|25|36): objs=133 size=300B /1/27S (2|25|36): objs=154 size=260B /1/28S (2|25|36): objs=152 size=278B /1/29N (2|25|36): objs=918 size=3.69KiB /1/30S (2|25|36): objs=153 size=123B /1/31N (2|25|36): objs=3163 size=13.58KiB /1/32S (2|25|36): objs=166 size=311B /1/33N (2|25|36): objs=2207 size=9.12KiB /1/34S (2|25|36): objs=136 size=314B /1/35N (2|25|36): objs=931 size=3.54KiB /2/0N (2|25|36): objs=36095 size=762.63KiB /2/1N (2|25|36): objs=43379 size=1.07MiB /2/2N (2|25|36): objs=35857 size=728.27KiB /2/3N (2|25|36): objs=12704 size=99.09KiB /2/4S (2|25|36): objs=159 size=141B /2/5N (2|25|36): objs=5481 size=30.27KiB /2/6S (2|25|36): objs=162 size=263B /2/7N (2|25|36): objs=339 size=1.03KiB /2/8S (2|25|36): objs=157 size=88B /2/9N (2|25|36): objs=1170 size=4.87KiB /2/10S (2|25|36): objs=136 size=213B /2/12S (2|25|36): objs=122 size=273B /2/13S (2|25|36): objs=153 size=136B /2/14S (2|25|36): objs=140 size=128B /2/15N (2|25|36): objs=1828 size=7.76KiB /2/16S (2|25|36): objs=130 size=237B /2/17N (2|25|36): objs=2680 size=11.2KiB /2/18S (2|25|36): objs=137 size=320B /2/19N (2|25|36): objs=473 size=1.57KiB /2/20S (2|25|36): objs=142 size=141B /2/21N (2|25|36): objs=2408 size=10.43KiB /2/22S (2|25|36): objs=176 size=236B /2/23N (2|25|36): objs=460 size=1.54KiB /2/24S (2|25|36): objs=150 size=177B /2/25S (2|25|36): objs=141 size=95B /2/26S (2|25|36): objs=149 size=95B /2/27N (2|25|36): objs=2158 size=8.99KiB /2/28S (2|25|36): objs=138 size=108B /2/29N (2|25|36): objs=3151 size=15.76KiB /2/30S (2|25|36): objs=142 size=182B /2/31N (2|25|36): objs=818 size=3.09KiB /2/32S (2|25|36): objs=167 size=114B /2/33N (2|25|36): objs=1070 size=4.19KiB /2/34S (2|25|36): objs=143 size=259B /2/35N (2|25|36): objs=2352 size=10.01KiB /3/0N (2|25|36): objs=39606 size=877.59KiB /3/1N (2|25|36): objs=36279 size=567.26KiB /3/2N (2|25|36): objs=37394 size=664.31KiB /3/3S (2|25|36): objs=164 size=146B /3/4S (2|25|36): objs=163 size=141B /3/5N (2|25|36): objs=1978 size=8.09KiB /3/6S (2|25|36): objs=130 size=140B /3/7N (2|25|36): objs=783 size=3.09KiB /3/8S (2|25|36): objs=166 size=186B /3/9N (2|25|36): objs=2289 size=9.68KiB /3/10S (2|25|36): objs=142 size=118B /3/11N (2|25|36): objs=8707 size=41.96KiB /3/12S (2|25|36): objs=156 size=232B /3/13N (2|25|36): objs=675 size=2.46KiB /3/14S (2|25|36): objs=157 size=106B /3/15N (2|25|36): objs=1042 size=3.99KiB /3/16S (2|25|36): objs=145 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objs=145 size=169B /31/2N (2|25|36): objs=18241 size=150.79KiB /31/3N (2|25|36): objs=40382 size=911.56KiB /31/4N (2|25|36): objs=40154 size=787.18KiB /31/5N (2|25|36): objs=6526 size=30.59KiB /31/6S (2|25|36): objs=153 size=119B /31/8S (2|25|36): objs=163 size=267B /31/10S (2|25|36): objs=147 size=200B /31/11N (2|25|36): objs=2262 size=9.41KiB /31/12S (2|25|36): objs=150 size=262B /31/13N (2|25|36): objs=5819 size=28.49KiB /31/14S (2|25|36): objs=168 size=232B /31/15N (2|25|36): objs=4258 size=21.23KiB /31/16S (2|25|36): objs=151 size=186B /31/17N (2|25|36): objs=328 size=1.05KiB /31/18S (2|25|36): objs=159 size=314B /31/19N (2|25|36): objs=771 size=2.85KiB /31/20S (2|25|36): objs=142 size=286B /31/21N (2|25|36): objs=1682 size=7.21KiB /31/22S (2|25|36): objs=146 size=164B /31/23N (2|25|36): objs=4310 size=19.46KiB /31/24S (2|25|36): objs=147 size=183B /31/26S (2|25|36): objs=147 size=292B /31/27N (2|25|36): objs=3618 size=16.66KiB /31/28S (2|25|36): objs=178 size=166B /31/29N (2|25|36): objs=1173 size=4.65KiB /31/30S (2|25|36): objs=160 size=317B /31/31N (2|25|36): objs=4847 size=23.25KiB /31/32S (2|25|36): objs=177 size=121B /31/33N (2|25|36): objs=2684 size=11.84KiB /31/34S (2|25|36): objs=153 size=310B /31/35S (2|25|36): objs=134 size=309B com.milaboratory.util.sorting.HashSorterTest > test2 SKIPPED Gradle is still running, please be patient... com.milaboratory.util.sorting.SortingUtilTest > test1 STANDARD_OUT Collation: 1.05s Sorting: 1.06s 1 217 41528 99464 99997 com.milaboratory.util.AtomicEnumHistogramTest > test1 STANDARD_OUT {"labels":["A","B","C","null"],"hist":[1,2,0,1]} com.milaboratory.util.CacheTest > test1 STANDARD_OUT Cache misses:400 Cache hits:800 com.milaboratory.util.NSequenceWithQualityPrintHelperTest > test1 SKIPPED com.milaboratory.util.JsonOverriderTest > test1 STANDARD_OUT WARNING: unnecessary override -Ob= with the same value. com.milaboratory.test.TestUtil > testLT STANDARD_OUT Short tests. No system env properties. com.milaboratory.core.motif.BitapPatternTest > ttt STANDARD_OUT 0 ATTWCCGACA 9 ||| |||| 20 ATTT--GACA 27 [S3:W->T,D4:C,D5:C] 24 -26 com.milaboratory.core.mutations.MutationTest > exportRegexps STANDARD_OUT S([\QAGCTNRYSWKMBDHV\E])(\d+)([\QAGCTNRYSWKMBDHV\E])|D([\QAGCTNRYSWKMBDHV\E])(\d+)|I(\d+)([\QAGCTNRYSWKMBDHV\E]) S([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])|D([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)|I(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E]) com.milaboratory.core.mutations.MutationsTest > testCanonical1 STANDARD_OUT GCTCGCCTAGAGAGGGAGATTGTATTGAGTTCATCTGACTGGCCATCTTTGGAGACTCTCAGCCTCCTTATAAGAAGTAAGCGGCTCGAAGAAGCGAATCGGGGTTAAGGCTTACCGTGTGCTTTCTAATAGTTAGGGGGCTATTGCGACAGACTTATCTCGTTGCGGCAGTGGGTAATCCCAAAAATCTAGACGTCCATGTCGGGTACCCCTCTATTCGACGTAGGGAACAAGACACCCTAGAATAGCGAATCTCCGCTACATTCTTAATCGACGTGCCTCGTAGACGTACTCATTAATGCCCTTGCCGTCCGAGGACCGTTCTCAAAGTACTGCGCTCGGATGATGTTATTAAACGGAGTACAGGTGCTAGCGTATTAGAGACATGCGGCAAATTCTCACGTTTGAACCAAAAACTTGGGTATTGCTCGCTTGTACAGGATCTAACATGTTTTGTAGTACGACGTGAAAGCTCCTTCCAGGGTAGGCCTAACGACAGCGCTCGGATCTTAGGATCGTAGGCTGGGTTCTTGGATCCACAGAAATAAAGCAGAGCGGTCACAATGATCTTCTGGTTTGTGGTGCCTCATGTATATATACTAGCATAGATTAATTCCGCCCTCAAAGACCGAAGGACCCCATCAGTCTCAAACTTGGTCTGGTGGGGTGTTAGAGGTGTGGGTTTAGCAGAATCTTTGCTGCGAGAGTGTTGTCCCAAAGCTCTCTGGGCTCTTAAGCGCTCAGTTACTCGTGAGCGTGGAATGACCATGTTCGTGGGCTGACATTGTCCA GCTCGCCTAGAGAGGAGATTGATTGAGTTCATCTGACTGGCCATCTTTGGAACTGCTCAGCCTCTTATAGATGTAGCGGTCGAACGAAGCGAATGCGGTGTTGAGGCTTACTGTGTGCTTTCTGATAGTTAGGGGGCTACTTGCGACAGACTTATCTCATTGCGGCAGTGAGTAATCCCAAAAATCTAACGTCCATGTCGGGTACCCCTCTATTCGACGTAGGAACAAGACACCCTAGAATAAGCGATCTCTACTACATCCTTAATCGTCGTGCCTCGTAGACGTACTCATTAATCCCTTGCCGTCCGAGACCGTTCTCAAAGTACCTGCGCTCGGAGGTGTTATTAAACGAGTACAGGTGCTACGCGTATTAGAGACATGCGGCAAATTCACGTGAACCAAAAACTTGGGTATTCTCGCTTGTACAGGATCTAACATGTTTATGAGTACGACGTGAACAGCTCTTCCAGTGTAGGCCTAACGACAGCGCTCGGACTTAGGATCGTAGGCTGGGTGTCTTGGATCCACAGGAATAAAGCGAGGGTCCAATGATCTTCTGGTTTTGGTGCCTCAGATATATACTACATGATTAACTCCGCCCTCAATAGTCCGAAAGACCCCATCGTCTCAAACTGTGTCTGGTGGGGTGTAGAGGTGTGGGTTTAGCAGAATCTTTGCTGCGAGAGTGTTCCCAAAGCTCTCTGGGCTCTTAAGCGCTCAGTTACTCGTGGCGTGGAATGACCTGTTCGTGGGCTGACATTTGTC GCTCGCCTAGAGAGGAATTGATTGAGTTCATCTGATCTGGCCATCTTTGGAACTGCTCAGCCTCTTATTGATGTAGCCGTTCGAACGAATCGAATGCGGTGTTGAGGCTTACTGTGTGCTTTTCTATAGTTAGGGGTTACTTCGACAGACTTATCTCATGGGCAGTGAGTATATCCAAGAATCAACGTCCATGTCGGGTACCCTCTATTCACGTGGAATTAGACACCCTAGACATAAGCGATCTCTACATCTTAATCGTCGTGCCTCGTTACGTACTCTTAATCCCTTGCCGTCCGAGAACCGTTCTCGAAGTACCTGCGCTCGGAGGTTCTTATTAAACGAGTACTGTTACGCGTATTGGAGGCATGCGGGAAATTCACTGAACCAAAAACTTGGGTATTCTCGCTGTACAGGATCTAACAGTGTTTATGAGTACGACGTATCAGCTCCTTCTAGTGAGGCCTAACGACAGGCTCGGACTAGGGTCGTAGGCTGGGTGTCTTGGATCCACAGGGATAAAGCGAGGGTCCAATGATCTTCTGGTTTTGGTGTCCTCAGGATATACTACTATATTAACTCCGCCCTCAATAGTCCGAAAGACCCCACGTCTCAAATGTGTCTGGTGGGGTGAAGGTGTGATTTAGCAGTTCCTTGCGCGAAGGGTTCCCAAAGCTCCTGGGTCTTAAGCGCTCATACTCGTGGGCGTGGAATGACCTGTTCCTTGGCCGGCATTCGGTC 0 GCTCGCCTAGAGA-GGA-ATTG-ATTGAGTTCATCTGATCTGGCCATCTTTGGA-ACTGCTCAGCCT-CTTAT-TGATGT-AGCCGTTCGAACGAATCGAATGCGGTGTTGAGGCTTACTGTGTGCTTTTCT-ATAGTTA-GGGGTTACTT-CGACAGACTTATCTC-ATG-GGCAGTGAGTATAT-CCAAGAATC-A-ACGTCCATGTCGGGTA-CCCTCTATTC-ACGT--GGAATTAGACACCCTAGACATAAGCG-ATCT---CTACA-TCTTAATCGTCGTGCCTCGT-TACGTACTC-TTAAT-CCCTTGCCGTCCGAGAACCGTTCTCGAAGTACCTGCGCTCGGAGGTTCTTATTAAAC-GAGTAC---TGTTACGCGTATTGGAGGCATGCGGGAAA-T-TCAC---TGAACCAAAAACTTGGGTATT-CTCGC-TGTACAGGATCTAACAGTGTTTATG-AGTACGACGT-ATCAGCTCCTTCTAGTG-AGGCCTAACGACAG-GCTCGGA-C-TAGGGTCGTAGGCTGGGTGTCTTGGATCCACAGGGATAAAGC-GAG-GGTC-CAATGATCTTCTGGTTT-TGGTGTCCTCA-G--GATATACTA-C-TATATTAACTCCGCCCTCAATAGTCCGAAAGACCCCA-C-GTCTCAAA--TGTGTCTGGTGGGGTG--A-AGGTGT-GATTTAGCAG-TTCCTTGC-GCGA-AG-GGT-TCCCAAAGCTC-CTGGG-TCTTAAGCGCTCA--TACTCGTGGGCGTGGAATGACC-TGTTCCTTGGCCGGCATTCGGT-C- 737 ||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||| ||| |||||||| ||||| || || ||| | ||||| ||| ||||| ||| ||| |||||||| |||||| ||||| ||||||| |||| || || ||||||||||||||| || ||||||| ||| || |||| |||| | |||||||||||||||| |||||||||| |||| |||| |||||||||||| || |||| |||| ||||| ||||||||| |||||||||| |||||||| ||||| ||||||||||||||| ||||||||| ||||| ||||||||||| | | ||||||||| |||||| || || ||||||| ||| ||||||| ||| | |||| ||||||||||||||||||||| ||||| |||||||||||||||| ||||| || |||||||||| | ||||||||| || | |||||||||||||| ||||||| | |||| ||||||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||||||||| ||||| ||||| | |||||||| | || ||||| ||||||||||| || ||||| ||||||| | |||||||| || ||||||||||||| | |||||| | |||||||| || |||| |||| || | | ||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||| ||||| | ||| | |||| || | 0 GCTCGCCTAGAGAGGGAGATTGTATTGAGTTCATCTGA-CTGGCCATCTTTGGAGACT-CTCAGCCTCCTTATAAGAAGTAAGCGGCTCGAA-GAAGCGAAT-CGGGGTTAAGGCTTACCGTGTGC-TTTCTAATAGTTAGGGGGCTA-TTGCGACAGACTTATCTCGTTGCGGCAGTGGGTA-ATCCCAAAAATCTAGACGTCCATGTCGGGTACCCCTCTATTCGACGTAGGGAACAAGACACCCTAGA-AT-AGCGAATCTCCGCTACATTCTTAATCGACGTGCCTCGTAGACGTACTCATTAATGCCCTTGCCGTCCGAGGACCGTTCTCAAAGTA-CTGCGCTCGGATGATGTTATTAAACGGAGTACAGGTGCTA-GCGTATTAGAGACATGCGGCAAATTCTCACGTTTGAACCAAAAACTTGGGTATTGCTCGCTTGTACAGGATCTAACA-TGTTT-TGTAGTACGACGTGA-AAGCTCCTTCCAGGGTAGGCCTAACGACAGCGCTCGGATCTTAGGATCGTAGGCTGGGT-TCTTGGATCCACAGAAATAAAGCAGAGCGGTCACAATGATCTTCTGGTTTGTGGTG-CCTCATGTATATATACTAGCATAGATTAATTCCGCCCTCAA-AGACCGAAGGACCCCATCAGTCTCAAACTTG-GTCTGGTGGGGTGTTAGAGGTGTGGGTTTAGCAGAATCTTTGCTGCGAGAGTGTTGTCCCAAAGCTCTCTGGGCTCTTAAGCGCTCAGTTACTCGTGAGCGTGGAATGACCATGTTCGTGGGCTGACATT--GTCCA 790 [I13:G,D15:G,I65:C,D66:C,I78:A,D79:A,I81:C,S81:C->G,S83:G->C,D84:C,D122:T,I125:T,I161:G,S161:G->T,D163:T,I224:A,S224:A->G,D225:G,I250:A,D251:A,D252:T,D253:C,S256:C->T,I257:C,I257:C,I263:T,S264:T->C,D265:C,D343:T,S344:G->T,S345:A->G,S346:T->A,S347:G->T,I348:G,I357:G,D358:G,I364:A,I364:G,I364:G,S364:A->T,D366:G,S367:T->C,D368:G,S369:C->T,D370:T,I389:G,S390:G->C,D391:C,I395:T,I396:C,D397:C,D398:T,I402:G,I402:T,S402:G->T,D403:T,D404:T,I432:T,D433:T,D474:C,I476:C,I591:T,S591:T->A,S592:A->T,D593:T,I604:A,I604:T,S605:T->G,D606:A,D607:G,I652:C,S652:C->T,S654:T->G,D655:G,I669:T,D670:T,I690:A,D691:A,I707:T,S707:T->G,S708:G->T,D709:T,I743:G,S743:G->T,D745:T,I772:C,S772:C->G,S773:G->T,S774:T->G,D776:G] 0 GCTCGCCTAGAGA-GGGAGATTGTATTGAGTTCATCTGACTGGCCATCTTTGGAGACTCTCAGCCT-CCTTATAAGAAGT-AAG-CGGCTCGAAGAAGCGAATCGGGGTTAAGGCTTACCGTGTGCTTT-CTAATAGTTAGGGGGCTATTGCGACAGACTTATCTC-GTTGCGGCAGTGGGTAATCCCAAAAATCTAGACGTCCATGTCGGGTACCCCTCTATTCGACGT-AGGGAACAAGACACCCTAGAATAGCG-AATCTCC--GCTACA-TTCTTAATCGACGTGCCTCGTAGACGTACTCATTAATGCCCTTGCCGTCCGAGGACCGTTCTCAAAGTACTGCGCTCGGATGATG-TTATTAAAC-GGAGTAC---AGGTGCTAGCGTATTAGAGACATGC-GGCAAA-T-TCTCAC--GTTTGAACCAAAAACTTGGGTATTGCTCGC-TTGTACAGGATCTAACATGTTTTGTAGTACGACGTGAAAGCTCC-TTCCAGGGTAGGCCTAACGACAGCGCTCGGATCTTAGGATCGTAGGCTGGGTTCTTGGATCCACAGAAATAAAGCAGAGCGGTCACAATGATCTTCTGGTTTGTGGTGCCTCATG-TATATATACTAGC--ATAGATTAATTCCGCCCTCAAAGACCGAAGGACCCCATCAGTCTCAAA-CTTGGTCTGGTGGGGTG-TTAGAGGTGTGGGTTTAGCAG-AATCTTTGCTGCGAGAG-TGTTGTCCCAAAGCTCTCTGGGCTCTTAAGCGCTCA-GTTACTCGTGAGCGTGGAATGACCATGTT-CGTGGGCTGACATTGTCCA 790 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | | | ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| | |||||||||||||||||| | ||| | | ||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| | |||||||||||||| 0 GCTCGCCTAGAGAGGG-AGATTGTATTGAGTTCATCTGACTGGCCATCTTTGGAGACTCTCAGCCTCC-TTATAAGAAGTAA-GCGGC-TCGAAGAAGCGAATCGGGGTTAAGGCTTACCGTGTGC-TTTCTAATAGTTAGGGGGCTATTGCGACAGACTTATCTCGTT-GCGGCAGTGGGTAATCCCAAAAATCTAGACGTCCATGTCGGGTACCCCTCTATTCGACGTAG-GGAACAAGACACCCTAGAATAGCGAA---TCTCCGCTACATTC-TTAATCGACGTGCCTCGTAGACGTACTCATTAATGCCCTTGCCGTCCGAGGACCGTTCTCAAAGTACTGCGCTCGGA-TGATGTTATTAAACGG-AGTACAGGTG-C-T-AGCGTATTAGAGACATGCGGC-AAATTCT--CACGTT--TGAACCAAAAACTTGGGTATTGCTCGCTT-GTACAGGATCTAACATGTTTTGTAGTACGACGTGAAAGCT-CCTTCCAGGGTAGGCCTAACGACAGCGCTCGGATCTTAGGATCGTAGGCTGGGTTCTTGGATCCACAGAAATAAAGCAGAGCGGTCACAATGATCTTCTGGTTTGTGGTGCCTCATGTAT-ATATACTAGCATAG--ATTAATTCCGCCCTCAAAGACCGAAGGACCCCATCAGTCTCAAACTTG-GTCTGGTGGGGTGTT-AGAGGTGTGGGTTTAGCAGAA-TCTTTGCTGCGAGAGTGT-TGTCCCAAAGCTCTCTGGGCTCTTAAGCGCTCAGTT-ACTCGTGAGCGTGGAATGACCATGTTCGTGG-GCTGACATTGTCCA 790 com.milaboratory.core.mutations.MutationsUtilTest > test1111 STANDARD_OUT S([\QAGCTNRYSWKMBDHV\E])(\d+)([\QAGCTNRYSWKMBDHV\E])|D([\QAGCTNRYSWKMBDHV\E])(\d+)|I(\d+)([\QAGCTNRYSWKMBDHV\E]) S([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])|D([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E])(\d+)|I(\d+)([\Q*ACDEFGHIKLMNPQRSTVWY_XBJZ\E]) com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual1 STANDARD_OUT [I2C::SM0I, I2G::I1A, I2C::I1A, SG2C:SM0I:I1A] com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual2 STANDARD_OUT [S0:T->N,D13:V,S14:S->Y,S15:P->R,S16:W->P,S17:Y->G,S18:D->T,S19:P->I,S20:G->P,S21:D->A,S22:K->T,S23:A->K,S24:F->R,S25:G->S,S26:P->D,I27:S] [-1, -1, 9, 15] com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual3 STANDARD_OUT 0 CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTACGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACAAACTATGCACAGAAGCTCCAGGGCAGAGTCACCATGACCACAGACACATCCACGAGCACAGCCTACATGGAGCTGAGGAGCCTGAGATCTGACGACACGGCCGTGTATTACTGTGCGAGAGA 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| || ||||| ||| || |||||||||||||| 0 CAGGTTCAGCTGGTGCAGTCTGGAGCTGAGGTGAAGAAGCCTGGGGCCTCAGTGAAGGTCTCCTGCAAGGCTTCTGGTTACACCTTTACCAGCTACGGTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGATGGATCAGCGCTTACAATGGTAACACATTCTATGCAGAGAAGTTCCAGGGCAGAGTCACCATGACCACAGACGCATCCACGACCACAGCCTATATGGAGCTGAGGAGCCTGACATTTGACG-----GCCACATACTACTGTGCGAGAGA 290 [S58:N->F,S61:Q->E,S63:L->F,S73:T->A,S76:S->T,S86:R->T,S87:S->F,S89:D->G,D90:T,D91:A,S92:V->H,S93:Y->I,S94:Y->L,S95:C->L,S96:A->C,S97:R->E,S98:_->R] QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTFYAEKFQGRVTMTTDASTTTAYMELRSLTFDGHILLCER QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYGISWVRQAPGQGLEWMGWISAYNGNTFYAEKFQGRVTMTTDASTTTAYMELRSLTFDGHILLCER [S58:N->F,S61:Q->E,S63:L->F,S73:T->A,S76:S->T,S86:R->T,S87:S->F,S89:D->G,D90:T,D91:A,S92:V->H,S93:Y->I,S94:Y->L,S95:C->L,S96:A->C,S97:R->E,S98:_->R] [0, 0, 1, 2, 3, 4, -1, 5, 6, 7, 7, 8, 8, 8, 10, 10, 11, 12] com.milaboratory.core.mutations.MutationsUtilTest > nt2AAWithMappingManual4 STANDARD_OUT [S3:S->M,D4:D,S5:_->I] com.milaboratory.core.io.util.IOUtilTest > test111 STANDARD_OUT 3 3 -2147483648 -9223372036854775808 com.milaboratory.core.io.sequence.fasta.RandomAccessFastaReaderTest > test1nt STANDARD_ERROR Indexing milib_c599519b574b09d3e9e7065b3573b11d4f3360276966349625176437433.fasta: 0% Indexing milib_c599519b574b09d3e9e7065b3573b11d4f3360276966349625176437433.fasta: done com.milaboratory.core.io.sequence.fasta.RandomAccessFastaReaderTest > test1 STANDARD_ERROR Indexing milib_c599519b574b09d3e9e7065b3573b11d4f3360276966349625176437433.fasta: 0% Indexing milib_c599519b574b09d3e9e7065b3573b11d4f3360276966349625176437433.fasta: done com.milaboratory.core.io.sequence.fasta.RandomAccessFastaReaderTest > test2 STANDARD_ERROR Indexing milib_b2f762a1e7af6fe249632762e7d461d2a6411e4918343225654943373063.tmp: 0% Indexing milib_b2f762a1e7af6fe249632762e7d461d2a6411e4918343225654943373063.tmp: 46.4% Indexing milib_b2f762a1e7af6fe249632762e7d461d2a6411e4918343225654943373063.tmp: 97.8% Indexing milib_b2f762a1e7af6fe249632762e7d461d2a6411e4918343225654943373063.tmp: done com.milaboratory.core.tree.SequenceTreeMapTest > testCase9 STANDARD_OUT Hit 1 0 ac-gacTtgactg 11 0 acTgac-tgactg 11 Hit 2 0 ac-gactTgactg 11 0 acTgact-gactg 11 com.milaboratory.core.tree.SequenceTreeMapTest > optimalityAndScopeTest STANDARD_OUT --NW alignments-- CASSLAPGATN-KLFF CASS-APGATNEKLFF CASSLAPGATN-KLFF CASSLAPG-TNEKLFF CASSLAPGATN-KLfF CASSLAPG-TNEKLyF --STM alignments-- CASSLAPGATN-KLFF CASS-APGATNEKLFF CASSLAPGATN-KLFF CASSLAPG-TNEKLFF CASSlAPGATN-KLFF CASSa-PGATNEKLFF CASSLAPGaTN-KLFF CASSLAPGt-NEKLFF CASSlAPGATN-KLFF CA-SsAPGATNEKLFF CASSlAPGATN-KLFF CAS-sAPGATNEKLFF CASSLAPGATNk-LFF CASS-APGATNeKLFF CASSLAPGaTN-KLFF CASSLAP-gTNEKLFF CASSLAPGATNk-LFF CASSLAPG-TNeKLFF CASSLAPGATN-KLfF CASSLAPG-TNEKLyF ------------------ com.milaboratory.core.tree.PrimerGenerator > generate SKIPPED com.milaboratory.core.merger.MergerParametersTest > test2 STANDARD_OUT { "qualityMergingAlgorithm": "SumSubtraction", "partsLayout": "Collinear", "minimalOverlap": 15, "maxQuality": 50, "minimalIdentity": 0.8, "identityType": "Unweighted" } com.milaboratory.core.sequence.AminoAcidSequenceTest > testName STANDARD_OUT 3 com.milaboratory.core.sequence.AminoAcidSequenceTest > testConvertPositionSync1 STANDARD_OUT FromCenter 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromLeftWithoutIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromLeftWithIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromRightWithoutIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 FromRightWithIncompleteCodon 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 com.milaboratory.core.sequence.GeneticCodeTest > generateExtendedGeneticCode SKIPPED com.milaboratory.core.sequence.ShortSequenceSetTest > test1 STANDARD_OUT 99955 elements with 366.33KiB in raw nucleotide entropy serialized into 273.41KiB com.milaboratory.core.sequence.AminoAcidAlphabetTest > testCalculateMatches SKIPPED com.milaboratory.core.sequence.NucleotideAlphabetTest > testCalculateIntersections SKIPPED com.milaboratory.core.sequence.quality.QualityTrimmerTest > testParametersSerialization0 STANDARD_OUT { "averageQualityThreshold": 7.0, "windowSize": 6 } com.milaboratory.core.sequence.quality.QualityAggregatorTest > test1 STANDARD_OUT 45 com.milaboratory.core.sequence.quality.QualityAggregatorTest > test2 STANDARD_OUT 650 com.milaboratory.core.sequence.quality.QualityAggregatorTest > test3 STANDARD_OUT 2511 com.milaboratory.core.RangeTest > test23e14 STANDARD_OUT 1000001 1010100 1000111 1000011 1000010 com.milaboratory.core.alignment.AlignmentTest > testInvert STANDARD_OUT 8 AGACACAGATACA 20 ||||||| ||||| 0 AGACACATATACA 12 0 AGACACATATACA 12 ||||||| ||||| 8 AGACACAGATACA 20 0 GATACATTAGACACAGATACA--- 20 ||||||| ||||| 0 --------AGACACATATACACAG 15 0 --------AGACACATATACACAG 15 ||||||| ||||| 0 GATACATTAGACACAGATACA--- 20 0 GATACATTAGA---CACAGATACA 20 ||||||||||| |||||||||| 5 GATACATTAGAGACCACAGATACA 28 5 GATACATTAGAGACCACAGATACA 28 ||||||||||| |||||||||| 0 GATACATTAGA---CACAGATACA 20 0 GATAC-----ATTAGA---CACAGATACA 20 ||||| |||||| |||||||||| 0 GATACGATACATTAGAGACCACAGATACA 28 0 GATACGATACATTAGAGACCACAGATACA 28 ||||| |||||| |||||||||| 0 GATAC-----ATTAGA---CACAGATACA 20 com.milaboratory.core.alignment.AlignmentTrimmerTest > testRandom1 STANDARD_OUT lTrimmed = 1761 rTrimmed = 1674 lTrimmed = 2941 rTrimmed = 2771 com.milaboratory.core.alignment.AlignmentIteratorTest > test1 STANDARD_OUT 0 -ATT-AGACA-- 7 ||| || | 0 AATTGGGA-ATT 10 I0AI3GSA3GDC6I8TI8T com.milaboratory.core.alignment.AlignerTest > testCalculateScore1 STANDARD_OUT 11.69us 10.60us 8.65us com.milaboratory.core.alignment.AlignerCustomTest > testSemiLocal0 STANDARD_OUT 29.0 2 c----cccTTgaa---tgTtaGTa-----taacta--tct 27 0 cAGTTccc--gaaACCtgCta--aGCTCTtaactaCTtct 35 29.0 2 c----cccTTgaa---tgTtaGTa-----taacta--tct 27 0 cAGTTccc--gaaACCtgCta--aGCTCTtaactaCTtct 35 com.milaboratory.core.alignment.kaligner2.OffsetPacksAccumulatorTest > testScoreCorrection2 SKIPPED com.milaboratory.core.alignment.kaligner2.KMapper2Test > test11112 STANDARD_OUT ID: 0 Score: 1719 Cluster 0: Q 27 -> T 15 - -12 Q 30 -> T 18 - -12 Q 39 -> T 28 - -11 Q 42 -> T 31 - -11 Q 45 -> T 34 - -11 Q 48 -> T 37 - -11 Q 51 -> T 40 - -11 Cluster 1: Q 84 -> T 50 - -34 Q 87 -> T 53 - -34 Q 90 -> T 56 - -34 Q 93 -> T 59 - -34 Q 96 -> T 62 - -34 Q 99 -> T 65 - -34 Q 111 -> T 79 - -32 Q 114 -> T 82 - -32 Cluster 2: Q 153 -> T 95 - -58 Q 156 -> T 98 - -58 Q 159 -> T 101 - -58 Cluster 3: Q 198 -> T 120 - -78 Q 201 -> T 123 - -78 Q 204 -> T 126 - -78 Q 207 -> T 129 - -78 Q 216 -> T 139 - -77 Q 219 -> T 142 - -77 Q 222 -> T 145 - -77 Q 231 -> T 153 - -78 Q 234 -> T 156 - -78 Q 237 -> T 159 - -78 Q 240 -> T 162 - -78 Cluster 4: Q 246 -> T 178 - -68 Q 249 -> T 181 - -68 Q 252 -> T 184 - -68 Q 255 -> T 187 - -68 Q 258 -> T 190 - -68 Q 261 -> T 193 - -68 Q 262 -> T 194 - -68 com.milaboratory.core.alignment.kaligner2.KMapper2Test > test1111 STANDARD_OUT ID: 0 Score: 1209 Cluster 0: Q 9 -> T 15 - 6 Q 12 -> T 18 - 6 Q 15 -> T 21 - 6 Q 18 -> T 24 - 6 Q 21 -> T 27 - 6 Q 24 -> T 30 - 6 Q 27 -> T 33 - 6 Q 30 -> T 36 - 6 Q 33 -> T 39 - 6 Cluster 1: Q 60 -> T 51 - -9 Q 69 -> T 61 - -8 Q 78 -> T 69 - -9 Q 81 -> T 72 - -9 Q 84 -> T 75 - -9 Cluster 2: Q 123 -> T 89 - -34 Q 126 -> T 92 - -34 Q 129 -> T 95 - -34 Q 132 -> T 98 - -34 Q 135 -> T 101 - -34 Q 150 -> T 116 - -34 Q 171 -> T 135 - -36 Q 174 -> T 138 - -36 Q 177 -> T 141 - -36 Q 180 -> T 144 - -36 Q 183 -> T 147 - -36 Q 185 -> T 149 - -36 Gradle is still running, please be patient... com.milaboratory.core.alignment.kaligner2.KMapper2Test > testRandom1 STANDARD_OUT noHits: 279 noHits2: 0 noHits3: 0 wrongTopHit: 44 wrongTopHitS: 33 noCorrectHitInList: 24 Timings: DescriptiveStatistics: n: 100000 min: 36167.0 max: 3.429470975E9 mean: 616507.5305198506 std dev: 1.3187345072383659E7 median: 466960.0 skewness: 195.94171272705825 kurtosis: 47032.72944620415 Clusters basicSize DescriptiveStatistics: n: 99677 min: 1.0 max: 7.0 mean: 2.874775524945585 std dev: 1.1083725853414113 median: 3.0 skewness: 0.277642954820058 kurtosis: -0.7015571477916591 Top Delta DescriptiveStatistics: n: 99697 min: -24.0 max: 0.0 mean: -0.0011033431296830984 std dev: 0.12833102365179114 median: 0.0 skewness: -130.14997250803614 kurtosis: 18764.981167284237 com.milaboratory.core.alignment.kaligner2.KAligner2Test > testBoundaries STANDARD_OUT 4956 com.milaboratory.core.alignment.kaligner2.KAligner2Test > caseJ1 STANDARD_OUT 52 0 TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGA 51 ||||||||||||||||||||||||||||||||||||||||||||||||||| 55 TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGGG 106 [S51:A->G] (0->52) (55->107) com.milaboratory.core.alignment.kaligner2.KAligner2Test > testCase0 SKIPPED com.milaboratory.core.alignment.kaligner2.KAligner2Test > testSimpleRandomTest STANDARD_OUT Time per query: 12.02ms Processed queries: 5 Bad percent: 0.0 False positive percent: 0.36363636363636365 Scoring error percent: 0.0 com.milaboratory.core.alignment.BandedAffineAlignerTest > test11 STANDARD_OUT 0 --------------------- -1 0 ATAAAAAAAAAAACGAGCTAG 20 0 --------------------- -1 0 ATAAAAAAAAAAACGAGCTAG 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test23 STANDARD_OUT 0 atgcggggatgc 11 0 atgcggggatgc 11 com.milaboratory.core.alignment.BandedAffineAlignerTest > test1 STANDARD_OUT 0 at-----------cgagctagTTTTTTTTTTT 20 0 atAAAAAAAAAAAcgagctag----------- 20 0 at-----------cgagctagTTTTTTTTTTT 20 0 atAAAAAAAAAAAcgagctag----------- 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test2 STANDARD_OUT 0 atgcGGGGatgc 11 0 atgcTA--atgc 9 0 atgcGGGGatgc----------- 11 0 atgcTA--atgcTTTTTTTTTTT 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test3 STANDARD_OUT 0 cgtaGGGGcgta 11 11 cgta--ATcgta 20 0 -----------cgtaGGGGcgta 11 0 TTTTTTTTTTTcgtaAT--cgta 20 com.milaboratory.core.alignment.BandedAffineAlignerTest > test4 STANDARD_OUT 0 atgcggggat-gTTTTT 15 0 atgcggggatAg----- 11 0 atgcggggat-gTTTTTTT 17 0 atgcggggatAg------- 11 com.milaboratory.core.alignment.BandedAffineAlignerTest > test5 STANDARD_OUT 7 g-taggggcgta 17 0 gAtaggggcgta 11 0 TTTTTTTg-taggggcgta 17 0 -------gAtaggggcgta 11 com.milaboratory.core.alignment.BandedAffineAlignerTest > test6 STANDARD_OUT 0 0 0 0 com.milaboratory.core.alignment.BandedAffineAlignerTest > semiGlobalLeft1 STANDARD_OUT 0 gCccTtgtgatgacccagactccagcctccgtgGAGgCaGctgtgggaggcacagtcaccatcaagtgccaggccagtcagagcattagcaacctcttaGCCTGGTATCAGCAGAAACCAGGGCAGCCTCCCAAGCTCCTGATCTATTATGCATCCGATCTGGcatctggggtctcatcaaggttcaaaggcagtggatctgggacagagtAcactctcaccatcagTggcgtgcagtgtgccgatgctgccacttactac 260 1 gAccCtgtgatgacccagactccagcctccgtgTCTgAaCctgtgggaggcacagtcaccatcaagtgccaggccagtcagagcattagcaacctctta-------------------------------------------------------------NNNcatctggggtctcatcaaggttcaaaggcagtggatctgggacagagtTcactctcaccatcagCggcgtgcagtgtgccgatgctgccacttactac 200 com.milaboratory.core.alignment.batch.SimpleBatchAlignerTest > test1 STANDARD_OUT 4 hits. com.milaboratory.core.alignment.blast.BlastAlignerTest > test1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerTest > simpleRandomTestT1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerTest > simpleRandomTestT2 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerTest > simpleRandomTestT3 SKIPPED com.milaboratory.core.alignment.blast.BlastDBBuilderTest > test1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerExtTest > test16SMicrobial1 SKIPPED com.milaboratory.core.alignment.blast.BlastAlignerExtTest > test1 SKIPPED com.milaboratory.core.alignment.AlignmentHelperTest > test1 STANDARD_OUT 0 GAGGTGCAGCTGGTGGAGTCTGGGGGAGGC 29 |||||||||||||||||||||||||||||| 0 GAGGTGCAGCTGGTGGAGTCTGGGGGAGGC 29 30 TTGGT-ACAGCCTGGGGGGTCCCTGAGACT 58 |||| | |||||||||||||| |||||| 30 CTGGTCA-AGCCTGGGGGGTCCATGAGACA 58 59 CTCCTGTGCAGCCTCTGGATTCACCTTCAG 88 |||||||||||||||||||||| ||||||| 59 CTCCTGTGCAGCCTCTGGATTCCCCTTCAG 88 89 TAGC-TATAGCATGAACTGGGTCCGCCAGG 117 || | ||||||||||||||||||||||||| 89 TA-CTTATAGCATGAACTGGGTCCGCCAGG 117 118 CTCCAGGGAAGGGGCTGGAGTGGGTTTCAT 147 ||||||||||||||||||||||||| |||| 118 CTCCAGGGAAGGGGCTGGAGTGGGTCTCAT 147 148 ACATTAGTAGTAGTAGTAG-TACCATATAC 176 |||||||||| ||||||| || |||||| 148 CCATTAGTAGTGGTAGTAGTTA-CATATAT 176 177 TACGCAGACTCTGTGAAGGGCCGATTCACC 206 ||||||||||| |||||||||||||||||| 177 TACGCAGACTCCGTGAAGGGCCGATTCACC 206 207 ATCTCCAGAGACAATGCCAAGAACTCACTG 236 |||||||||||||| ||||||||||||||| 207 ATCTCCAGAGACAACGCCAAGAACTCACTG 236 237 TATCTGCAAATGAACAGCCTGAGAGACGAG 266 ||||||||||||||||||||||||| |||| 237 TATCTGCAAATGAACAGCCTGAGAGCCGAG 266 267 GACACGGCTGTGTATTACTGTGC 289 ||||||||||||||||||||||| 267 GACACGGCTGTGTATTACTGTGC 289 com.milaboratory.core.alignment.MultiAlignmentHelperTest > test1 STANDARD_OUT 8 AGACACAGATACA 20 ||||||| ||||| 0 AGACACATATACA 12 0 GATACATTAGACACAGATACA--- 20 ||||||| ||||| 0 --------AGACACATATACACAG 15 0 GATACATTAGA---CACAGATACA 20 ||||||||||| |||||||||| 5 GATACATTAGAGACCACAGATACA 28 0 GATAC-----ATTAGA---CACAGATACA 20 ||||| |||||| |||||||||| 0 GATACGATACATTAGAGACCACAGATACA 28 Quality 78778 878777 7778887878 Subject 0 GATAC-----ATTAGA---CACAGATACA--- 20 Query0 0 aga---cacaTataca 12 Query1 0 -------------aga---cacaTatacaCAG 15 Query2 5 gatac-----attagaGACcacagataca 28 Query3 0 gatacGATACattagaGACcacagataca 28 Quality 78778 Subject 0 GATAC 4 Query1 0 ----- 0 Query2 5 gatac 9 Query3 0 gatac 4 Quality Subject 5 ----- 5 Query1 0 ----- 0 Query2 10 ----- 10 Query3 5 GATAC 9 Quality 87877 Subject 5 ATTAG 9 Query0 0 ag 1 Query1 0 ---ag 1 Query2 10 attag 14 Query3 10 attag 14 Quality 7 7 Subject 10 A---C 11 Query0 2 a---c 3 Query1 2 a---c 3 Query2 15 aGACc 19 Query3 15 aGACc 19 Quality 77888 Subject 12 ACAGA 16 Query0 4 acaTa 8 Query1 4 acaTa 8 Query2 20 acaga 24 Query3 20 acaga 24 Quality 7878 Subject 17 TACA- 20 Query0 9 taca 12 Query1 9 tacaC 13 Query2 25 taca 28 Query3 25 taca 28 Quality Subject 21 -- 21 Query1 14 AG 15 0 GATAC-----ATTAGA---CACAGATACA--- 20 0 ...---....T..... 12 0 -------------...---....T.....CAG 15 5 .....-----......GAC.......... 28 0 .....GATAC......GAC.......... 28 787788787777778887878 0 GATACATTAGACACAGATACA 20 com.milaboratory.core.alignment.MultiAlignmentHelperTest > test2 STANDARD_OUT 15 TATAGGGAGAACTCCGATCGACATCG 40 ||||||||| ||||||||||||||| 0 TATAGGGAG--CTCCGATCGACATCG 23 56 CGATCC--CGGTGACAAAGCGTTCGGACC 82 |||||| ||||||||||||||||||||| 0 CGATCCTTCGGTGACAAAGCGTTCGGACC 28 36 CATCGGGTATCGCCCTGGTACG 57 |||| ||||||||||||||||| 0 CATCAGGTATCGCCCTGGTACG 21 0 AACGATGGGCGCAAATATAGGGAGAACTCCGATCGACATCGGGTATCGCCCTGGTACGATCC--CGGTGACAAAGCGTTCGGACCTGTCTGGACGCTAGAACGC 101 0 tatagggag--ctccgatcgacatcg 23 0 cgatccTTcggtgacaaagcgttcggacc 28 0 catcAggtatcgccctggtacg 21 com.milaboratory.core.alignment.BandedLinearAlignerTest > testCase1 STANDARD_OUT GCGTGAAGACTGCAGGCATTGAGTACGTTACTAGTCCAGTGGGGCCCAACCGTAACATTGCGTGTGACTGGTTGCTTAGCGGGTGACGGCGTTTCAGGTTACGCCCTCTGTGCATCACCGATAGCGTTGTTTGAGCTTTCTAACGTCTCAAACCTGCTTGCGCCCTACGGTTTCTCTATATATACACGAAAGGGGCTGGTCGCAACCTCGCAATTCTATCCCTCCAACCTCCCTCGAATTTTT AAAGCGTGAAGACTTGCAGGCATTGGTACGTTATTAGTCCAGTGGGGCCACAACCGTAACATTGCGTGTGACTGGTGCTTAGCGGGTGACGGCGTTCAGGTTACGCCCTCTGTGCATCACCGATTAGCGTTGTCTGAGCTTTCTAACGTCTCAAACCTGCTTGCGCCCTACGGTTTCTCTATAGTATCACGAAAGGGTCTGGTCGCAACCTCGCAATTCTATCCCTCCAACCTCCCTTGAATTTTTCTA com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal1 STANDARD_OUT 1 AATTGACA 8 |||||| 0 TATTGACT 7 com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal2 STANDARD_OUT 1 AATTGACAG 9 |||||| | 0 TATTGAC-G 7 com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal3 STANDARD_OUT 0 TATTGACT 7 |||||| 1 AATTGACA 8 com.milaboratory.core.alignment.BandedLinearAlignerTest > testGlobal4 STANDARD_OUT 0 TATTGAC-G 7 |||||| | 1 AATTGACAG 9 com.milaboratory.core.alignment.kaligner1.KMapperTest > testBestOffset2 STANDARD_OUT -205 com.milaboratory.core.alignment.kaligner1.KAlignerTest > testRandomCorrectness STANDARD_OUT C=1182;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 821.38us C=1642;I=1;M=0;ScE=0;R=0.0 AlignmentTime = 807.44us C=2048;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 530.32us C=2142;I=0;M=0;ScE=0;R=8.333333333333333E-7 AlignmentTime = 540.72us com.milaboratory.core.alignment.kaligner1.KAlignerTest > testRandom1 STANDARD_OUT ##teamcity[buildStatisticValue key='kmFound' value='0.9449'] ##teamcity[buildStatisticValue key='kmWrong' value='1.0E-4'] ##teamcity[buildStatisticValue key='kmFalse' value='0.0058'] com.milaboratory.core.alignment.kaligner1.KAlignerTest > testRandomCorrectnessConcurrent STANDARD_OUT C=2999;I=0;M=0;ScE=1;R=0.0 AlignmentTime = 965.30us C=2999;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 1.07ms C=3000;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 946.47us C=2998;I=0;M=0;ScE=0;R=0.0 AlignmentTime = 1.11ms Gradle Test Executor 1 finished executing tests. WARNING: A terminally deprecated method in java.lang.System has been called WARNING: System::setSecurityManager has been called by org.gradle.api.internal.tasks.testing.worker.TestWorker (file:/usr/share/gradle/lib/plugins/gradle-testing-base-4.4.1.jar) WARNING: Please consider reporting this to the maintainers of org.gradle.api.internal.tasks.testing.worker.TestWorker WARNING: System::setSecurityManager will be removed in a future release Finished generating test XML results (0.585 secs) into: /build/reproducible-path/milib-2.2.0+dfsg/build/test-results/test Generating HTML test report... Finished generating test html results (0.979 secs) into: /build/reproducible-path/milib-2.2.0+dfsg/build/reports/tests/test :test (Thread[Task worker for ':',5,main]) completed. Took 23 mins 2.449 secs. BUILD SUCCESSFUL in 25m 14s 5 actionable tasks: 3 executed, 2 up-to-date create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libmilib-java/ mh_install jh_installjavadoc dh_installdocs dh_installchangelogs dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_depends dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libmilib-java' in '../libmilib-java_2.2.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../milib_2.2.0+dfsg-1_armhf.buildinfo dpkg-genchanges --build=binary -O../milib_2.2.0+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31058 and its subdirectories I: Current time: Fri May 17 08:31:39 -12 2024 I: pbuilder-time-stamp: 1715977899 Fri May 17 20:31:48 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt32b-armhf-rb.debian.net. Fri May 17 20:31:48 UTC 2024 I: Preparing to do remote build '2' on virt32b-armhf-rb.debian.net. Fri May 17 20:52:25 UTC 2024 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. Fri May 17 20:52:28 UTC 2024 I: milib_2.2.0+dfsg-1_armhf.changes: Format: 1.8 Date: Fri, 30 Dec 2022 14:38:35 +0100 Source: milib Binary: libmilib-java Architecture: all Version: 2.2.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Pierre Gruet Description: libmilib-java - library for Next Generation Sequencing (NGS) data processing Changes: milib (2.2.0+dfsg-1) unstable; urgency=medium . * New upstream version 2.2.0+dfsg * Refreshing patches * Raising Standards version to 4.6.2 (no change) Checksums-Sha1: 8751ab750ded5a1e80da958bf1f6ba5121a4050f 776412 libmilib-java_2.2.0+dfsg-1_all.deb de3ce6edebb3df06b2173a1a476dd2ddde90e081 15103 milib_2.2.0+dfsg-1_armhf.buildinfo Checksums-Sha256: 9d263103a291a0df5e0be2923c16eb848bfcb61a35f98a56b0647d804db1c5d7 776412 libmilib-java_2.2.0+dfsg-1_all.deb a359b8de4f1f919f6ddab79f8884efeddcfe235fd4bcf4f63aabf62a9f13cf44 15103 milib_2.2.0+dfsg-1_armhf.buildinfo Files: 3e12dbbef8c0dc2929397086181e17b8 776412 java optional libmilib-java_2.2.0+dfsg-1_all.deb 29698d6c95532518bf851547e67b6bb0 15103 java optional milib_2.2.0+dfsg-1_armhf.buildinfo Fri May 17 20:52:30 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_13-3328.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.mp6MxaNR/milib_2.2.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.mp6MxaNR/milib_2.2.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.mp6MxaNR/milib_2.2.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.mp6MxaNR/b1/milib_2.2.0+dfsg-1_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.mp6MxaNR/b2/milib_2.2.0+dfsg-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.380s) 0.380s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 765ms CPU time consumed: 764ms Fri May 17 20:52:31 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Fri May 17 20:52:31 UTC 2024 I: milib from unstable built successfully and reproducibly on armhf. Fri May 17 20:52:32 UTC 2024 I: Submitting .buildinfo files to external archives: Fri May 17 20:52:32 UTC 2024 I: Submitting 16K b1/milib_2.2.0+dfsg-1_armhf.buildinfo.asc Fri May 17 20:52:34 UTC 2024 I: Submitting 16K b2/milib_2.2.0+dfsg-1_armhf.buildinfo.asc Fri May 17 20:52:36 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri May 17 20:52:36 UTC 2024 I: Done submitting .buildinfo files. Fri May 17 20:52:36 UTC 2024 I: Removing signed milib_2.2.0+dfsg-1_armhf.buildinfo.asc files: removed './b1/milib_2.2.0+dfsg-1_armhf.buildinfo.asc' removed './b2/milib_2.2.0+dfsg-1_armhf.buildinfo.asc'