Tue May 21 12:24:02 UTC 2024 I: starting to build libbpp-seq-omics/unstable/armhf on jenkins on '2024-05-21 12:23' Tue May 21 12:24:02 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_1/3747/console.log Tue May 21 12:24:02 UTC 2024 I: Downloading source for unstable/libbpp-seq-omics=2.4.1-11 --2024-05-21 12:24:02-- http://deb.debian.org/debian/pool/main/libb/libbpp-seq-omics/libbpp-seq-omics_2.4.1-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2219 (2.2K) [text/prs.lines.tag] Saving to: ‘libbpp-seq-omics_2.4.1-11.dsc’ 0K .. 100% 258M=0s 2024-05-21 12:24:02 (258 MB/s) - ‘libbpp-seq-omics_2.4.1-11.dsc’ saved [2219/2219] Tue May 21 12:24:02 UTC 2024 I: libbpp-seq-omics_2.4.1-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev, libbpp-seq-omics3t64 Architecture: any Version: 2.4.1-11 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libbpp-seq-omics Vcs-Git: https://salsa.debian.org/med-team/libbpp-seq-omics.git Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-seq-dev Package-List: libbpp-seq-omics-dev deb libdevel optional arch=any libbpp-seq-omics3t64 deb libs optional arch=any Checksums-Sha1: 9474c6f779a2c5aafc580288f97c1c2e33091591 107415 libbpp-seq-omics_2.4.1.orig.tar.gz 16bb2d23748be917658b17417206054b20968b11 17784 libbpp-seq-omics_2.4.1-11.debian.tar.xz Checksums-Sha256: 200da925b42065998d825f0b2a37e26b00a865883c85bc332beb3a94cae1e08b 107415 libbpp-seq-omics_2.4.1.orig.tar.gz 63eadee5908d397d1ba042745c6ec6f71f9cf76677e80bef99e6c2c4cb837743 17784 libbpp-seq-omics_2.4.1-11.debian.tar.xz Files: fe5d906c557d94ef1341e78f240119d4 107415 libbpp-seq-omics_2.4.1.orig.tar.gz 1c4efe54bc470f960f7776d87694e551 17784 libbpp-seq-omics_2.4.1-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYBvEsACgkQPCZ2P2xn 5uL6URAAkQ9I+V/3NtllVMM3tXIElXwK0w+Tb8nPAX3WINZkmcbq62y2iBT9FP9b qhaTXfRhjYJ0fzZ3SW+Ja3Kf3dQRbrnGQF3Bb8eJ5fpZuPHUNTicYz4zzfbHO/Yf u/iOLKdqdSNyCQprRDYacKlqoesrjkZjlhGW0q+ZZSNJnituTCAmxT8WarAGqwfe SkQMsqLAnHkjiaoMDG2E9Ry4I5hq+rezN5gd6fe4JMzjtYBtaT7vqvza1TcL5CSC sUQktTCEuEA+k38XzLSzVfNd5Z/v9W5qMn0GsjP7hz1xp92/9U1HIV18HnKZZjsw hr44y1QiBM0TUL7Ckdd6U6ZwFxdPilnJrKWSI0bGqAj5Pm+DTmXlMxOF6P/x8gbr 1pNXmH0JkSBKeptG/gDgxFrtnq9l0gjqyQYcJDBBKy5MLjfXAyznePBDY5HuksTo mPCes7W0JtPc4RGlw6Lb3Suoe2M5FiEtGo6JnkFoxYV4sw+Q7pbzPaq/IK/tJAwp o38tIpWEpWTysXy1YYLXEVNmft78QSnWqlSdnTSprwSExR9CfbDFKcIKB2m7g2RY +fPo3jOsLe3mYKSc154b9851Hll1oC3wDN7yCAnOar4PQpiWwxBnPucxzxUuMykI LgT76PC3GS3WCX2Zkdp005ThIIsBiz5Ws+HYMA1WcES3Qz8ScwQ= =VCiC -----END PGP SIGNATURE----- Tue May 21 12:24:02 UTC 2024 I: Checking whether the package is not for us Tue May 21 12:24:02 UTC 2024 I: Starting 1st build on remote node cbxi4a-armhf-rb.debian.net. Tue May 21 12:24:02 UTC 2024 I: Preparing to do remote build '1' on cbxi4a-armhf-rb.debian.net. Tue May 21 12:49:22 UTC 2024 I: Deleting $TMPDIR on cbxi4a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 21 00:24:14 -12 2024 I: pbuilder-time-stamp: 1716294254 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbpp-seq-omics_2.4.1-11.dsc] I: copying [./libbpp-seq-omics_2.4.1.orig.tar.gz] I: copying [./libbpp-seq-omics_2.4.1-11.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 25 18:02:51 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbpp-seq-omics_2.4.1-11.dsc: no acceptable signature found dpkg-source: info: extracting libbpp-seq-omics in libbpp-seq-omics-2.4.1 dpkg-source: info: unpacking libbpp-seq-omics_2.4.1.orig.tar.gz dpkg-source: info: unpacking libbpp-seq-omics_2.4.1-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/7665/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='8f0dee726aa54102aa82cf83bcddfa8d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='7665' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.77YYc5lQ/pbuilderrc_2bcs --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.77YYc5lQ/b1 --logfile b1/build.log libbpp-seq-omics_2.4.1-11.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux cbxi4a 6.1.0-21-armmp #1 SMP Debian 6.1.90-1 (2024-05-03) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 19 07:46 /bin -> usr/bin I: user script /srv/workspace/pbuilder/7665/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), libbpp-seq-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19463 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbpp-seq-dev; however: Package libbpp-seq-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdata-optlist-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libparams-util-perl{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-install-perl{a} libsub-override-perl{a} libsub-prototype-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libssl3 lynx psmisc publicsuffix wget 0 packages upgraded, 61 newly installed, 0 to remove and 0 not upgraded. Need to get 31.8 MB of archives. After unpacking 126 MB will be used. Writing extended state information... 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libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.61.0-1+b1 [64.1 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.7.1-5 [391 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-4 [134 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.29.3-1 [2167 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.29.3-1+b2 [5216 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf d-shlibs all 0.106 [10.9 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libparams-util-perl armhf 1.102-3 [23.0 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf libsub-install-perl all 0.929-1 [10.5 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libsub-prototype-perl armhf 0.03-2+b2 [9460 B] Get: 49 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.11-1 [10.4 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 52 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libbpp-core4t64 armhf 2.4.1-12 [527 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libbpp-core-dev armhf 2.4.1-12 [957 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libbpp-seq12t64 armhf 2.4.1-12 [438 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libbpp-seq-dev armhf 2.4.1-12 [742 kB] Fetched 31.8 MB in 3s (10.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19463 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_armhf.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbpp-seq-omics-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-seq-omics_2.4.1-11_source.changes dpkg-buildpackage: info: source package libbpp-seq-omics dpkg-buildpackage: info: source version 2.4.1-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:8 (cmake_minimum_required): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.1.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.a -- shared lib: /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 -- includes: /usr/include -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (2.8s) -- Generating done (0.4s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-seq-omics-2.4.1 -B/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/depend make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-seq-omics-2.4.1 /build/reproducible-path/libbpp-seq-omics-2.4.1/src /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-static.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-seq-omics-2.4.1 /build/reproducible-path/libbpp-seq-omics-2.4.1/src /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src/CMakeFiles/bpp-seq-omics-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-omics-shared.dir/build.make src/CMakeFiles/bpp-seq-omics-shared.dir/build make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/bpp-seq-omics-static.dir/build.make src/CMakeFiles/bpp-seq-omics-static.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' [ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o [ 2%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o [ 3%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp [ 4%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp [ 6%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp [ 7%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeature.cpp [ 8%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Feature/SequenceFeatureTools.cpp [ 9%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Fastq.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ 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-g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 13%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 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CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp [ 21%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o -MF 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CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 25%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o -MF 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CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 28%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 29%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp [ 30%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 31%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 32%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp [ 34%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 35%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 36%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c 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[ 40%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 41%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp [ 42%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 43%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp [ 45%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 46%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 47%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp [ 48%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 50%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 51%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 52%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 53%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 54%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp [ 56%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 57%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp [ 58%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp [ 59%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp [ 60%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp [ 62%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 63%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/IterationListener.cpp [ 64%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafIterator.cpp [ 65%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafParser.cpp [ 67%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 68%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafSequence.cpp [ 69%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 70%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MafStatistics.cpp [ 71%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp [ 73%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 74%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp [ 75%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp [ 76%] Building CXX object src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -Dbpp_seq_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [ 78%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp [ 79%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp [ 80%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp [ 81%] Linking CXX shared library libbpp-seq-omics.so cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-seq-omics.so.3 -o libbpp-seq-omics.so.3.0.0 "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Fastq.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-shared.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o" /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_symlink_library libbpp-seq-omics.so.3.0.0 libbpp-seq-omics.so.3 libbpp-seq-omics.so make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' [ 81%] Built target bpp-seq-omics-shared make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-seq-omics-2.4.1 /build/reproducible-path/libbpp-seq-omics-2.4.1/test /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_fastq.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_fastq.dir/build.make test/CMakeFiles/test_fastq.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' [ 82%] Building CXX object test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_fastq.dir/test_fastq.cpp.o -MF CMakeFiles/test_fastq.dir/test_fastq.cpp.o.d -o CMakeFiles/test_fastq.dir/test_fastq.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/test/test_fastq.cpp [ 84%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputMafIterator.cpp [ 85%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp [ 86%] Linking CXX executable test_fastq cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fastq.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_fastq.dir/test_fastq.cpp.o -o test_fastq -Wl,-rpath,/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' [ 86%] Built target test_fastq make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/depend make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-seq-omics-2.4.1 /build/reproducible-path/libbpp-seq-omics-2.4.1/test /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test/CMakeFiles/test_gff.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make -f test/CMakeFiles/test_gff.dir/build.make test/CMakeFiles/test_gff.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' [ 87%] Building CXX object test/CMakeFiles/test_gff.dir/test_gff.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT test/CMakeFiles/test_gff.dir/test_gff.cpp.o -MF CMakeFiles/test_gff.dir/test_gff.cpp.o.d -o CMakeFiles/test_gff.dir/test_gff.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/test/test_gff.cpp [ 89%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp [ 90%] Linking CXX executable test_gff cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_gff.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/test_gff.dir/test_gff.cpp.o -o test_gff -Wl,-rpath,/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src ../src/libbpp-seq-omics.so.3.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-seq.so.12.0.0 /usr/lib/arm-linux-gnueabihf/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' [ 90%] Built target test_gff [ 91%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp [ 95%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp [ 96%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp [ 97%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp [ 98%] Building CXX object src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-seq-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-seq-omics-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -MF CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o.d -o CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o -c /build/reproducible-path/libbpp-seq-omics-2.4.1/src/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp [100%] Linking CXX static library libbpp-seq-omics.a cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -P CMakeFiles/bpp-seq-omics-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-seq-omics-static.dir/link.txt --verbose=1 /usr/bin/ar qc libbpp-seq-omics.a "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gff/GffFeatureReader.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/Gtf/GtfFeatureReader.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeature.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Feature/SequenceFeatureTools.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Fastq.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/BlockMergerMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ChromosomeMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/ConcatenateMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/IterationListener.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafParser.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafSequence.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MafStatistics.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MaskFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/TableOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrderFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/OutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/QualityFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/VcfOutputMafIterator.cpp.o" "CMakeFiles/bpp-seq-omics-static.dir/Bpp/Seq/Io/Maf/WindowSplitMafIterator.cpp.o" /usr/bin/ranlib libbpp-seq-omics.a make[3]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' [100%] Built target bpp-seq-omics-static make[2]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' dh_auto_test cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 make[1]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j3 UpdateCTestConfiguration from :/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_fastq 1: Test command: /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test/test_fastq 1: Working Directory: /build/reproducible-path/libbpp-seq-omics-2.4.1/test 1: Test timeout computed to be: 60000 test 2 Start 2: test_gff 2: Test command: /build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf/test/test_gff 2: Working Directory: /build/reproducible-path/libbpp-seq-omics-2.4.1/test 2: Test timeout computed to be: 60000 1: EAS54_6_R1_2_1_413_324 25 18 26 1: @EAS54_6_R1_2_1_413_324 1: CCCTTCTTGTCTTCAGCGTTTCTCC 1: +EAS54_6_R1_2_1_413_324 1: ;;3;;;;;;;;;;;;7;;;;;;;88 1: EAS54_6_R1_2_1_540_792 25 12 26 1: @EAS54_6_R1_2_1_540_792 1: TTGGCAGGCCAAGGCCGATGGATCA 1: +EAS54_6_R1_2_1_540_792 1: ;;;;;;;;;;;7;;;;;-;;;3;83 1: EAS54_6_R1_2_1_443_348 25 13 26 1: @EAS54_6_R1_2_1_443_348 1: GTTGCTTCTGGCGTGGGTGGGGGGG 1: +EAS54_6_R1_2_1_443_348 1: ;;;;;;;;;;;9;7;;.7;393333 2: Found feature gene00001 of type gene, starting at 999 and ending at 9000 2: Found feature tfbs00001 of type TF_binding_site, starting at 999 and ending at 1012 2: Found feature mRNA00001 of type mRNA, starting at 1049 and ending at 9000 2: Found feature mRNA00002 of type mRNA, starting at 1049 and ending at 9000 2: Found feature mRNA00003 of type mRNA, starting at 1299 and ending at 9000 2: Found feature exon00001 of type exon, starting at 1299 and ending at 1500 2: Found feature exon00002 of type exon, starting at 1049 and ending at 1500 2: Found feature exon00003 of type exon, starting at 2999 and ending at 3902 2: Found feature exon00004 of type exon, starting at 4999 and ending at 5500 2: Found feature exon00005 of type exon, starting at 6999 and ending at 9000 2: Found feature cds00001 of type CDS, starting at 1200 and ending at 1500 2: Found feature cds00001 of type CDS, starting at 2999 and ending at 3902 2: Found feature cds00001 of type CDS, starting at 4999 and ending at 5500 2: Found feature cds00001 of type CDS, starting at 6999 and ending at 7600 2: Found feature cds00002 of type CDS, starting at 1200 and ending at 1500 2: Found feature cds00002 of type CDS, starting at 4999 and ending at 5500 2: Found feature cds00002 of type CDS, starting at 6999 and ending at 7600 2: Found feature cds00003 of type CDS, starting at 3300 and ending at 3902 2: Found feature cds00003 of type CDS, starting at 4999 and ending at 5500 2: Found feature cds00003 of type CDS, starting at 6999 and ending at 7600 2: Found feature cds00004 of type CDS, starting at 3390 and ending at 3902 2: Found feature cds00004 of type CDS, starting at 4999 and ending at 5500 2: Found feature cds00004 of type CDS, starting at 6999 and ending at 7600 1/2 Test #1: test_fastq ....................... Passed 0.07 sec 2/2 Test #2: test_gff ......................... Passed 0.06 sec 100% tests passed, 0 tests failed out of 2 Total Test time (real) = 0.09 sec make[1]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/libbpp-seq-omics-2.4.1 -B/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config.cmake -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-config-version.cmake -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3 -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockMergerMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FullGapFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinateTranslatorMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafParser.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockLengthMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceLDhotOutputMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ConcatenateMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/EntropyFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStatisticsMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaskFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/WindowSplitMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafStatistics.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/RemoveEmptySequencesMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FeatureExtractorMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/ChromosomeMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DuplicateFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TableOutputMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MsmcOutputMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AlignmentFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/QualityFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/IterationListener.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/VcfOutputMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrphanSequenceFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputAlignmentMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafBlock.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/PlinkOutputMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MafSequence.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/BlockSizeMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CoordinatesOutputMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/SequenceStreamToMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OrderFilterMafIterator.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Fastq.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gff/GffFeatureReader.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeatureTools.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Bed/BedGraphFeatureReader.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/SequenceFeature.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/FeatureReader.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Feature/Gtf/GtfFeatureReader.h -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets.cmake -- Installing: /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/bpp-seq-omics/bpp-seq-omics-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libbpp-seq-omics-2.4.1' dh_install d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev debian/tmp/usr/lib/*/cmake usr/lib/arm-linux-gnueabihf \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility --> libbpp-core-dev package exists. --> libbpp-seq-dev package exists. set -e install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbpp-seq-omics3t64/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.a debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3 debian/libbpp-seq-omics3t64/usr/lib/arm-linux-gnueabihf mv /build/reproducible-path/libbpp-seq-omics-2.4.1/debian/tmp/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 debian/libbpp-seq-omics3t64/usr/lib/arm-linux-gnueabihf PKGDEV=libbpp-seq-omics-dev PKGSHL=libbpp-seq-omics3t64 install -d -m 755 debian/libbpp-seq-omics-dev/usr/include mv debian/tmp/usr/include/Bpp debian/libbpp-seq-omics-dev/usr/include install -d -m 755 debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libbpp-seq-omics-dev/usr/lib/arm-linux-gnueabihf make[1]: Leaving directory '/build/reproducible-path/libbpp-seq-omics-2.4.1' dh_installdocs dh_installchangelogs dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbpp-seq-omics3t64/usr/lib/arm-linux-gnueabihf/libbpp-seq-omics.so.3.0.0 found in none of the libraries dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbpp-seq-omics-dev' in '../libbpp-seq-omics-dev_2.4.1-11_armhf.deb'. dpkg-deb: building package 'libbpp-seq-omics3t64' in '../libbpp-seq-omics3t64_2.4.1-11_armhf.deb'. dpkg-deb: building package 'libbpp-seq-omics3t64-dbgsym' in '../libbpp-seq-omics3t64-dbgsym_2.4.1-11_armhf.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-seq-omics_2.4.1-11_armhf.buildinfo dpkg-genchanges --build=binary -O../libbpp-seq-omics_2.4.1-11_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/7665 and its subdirectories I: Current time: Tue May 21 00:49:04 -12 2024 I: pbuilder-time-stamp: 1716295744 Tue May 21 12:49:24 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64z-armhf-rb.debian.net. Tue May 21 12:49:24 UTC 2024 I: Preparing to do remote build '2' on virt64z-armhf-rb.debian.net. Tue May 21 12:53:50 UTC 2024 I: Deleting $TMPDIR on virt64z-armhf-rb.debian.net. Tue May 21 12:53:52 UTC 2024 I: libbpp-seq-omics_2.4.1-11_armhf.changes: Format: 1.8 Date: Mon, 25 Mar 2024 19:02:40 +0100 Source: libbpp-seq-omics Binary: libbpp-seq-omics-dev libbpp-seq-omics3t64 libbpp-seq-omics3t64-dbgsym Architecture: armhf Version: 2.4.1-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libbpp-seq-omics-dev - Bio++ Sequence library: genomics components (development files) libbpp-seq-omics3t64 - Bio++ Sequence library: genomics components Changes: libbpp-seq-omics (2.4.1-11) unstable; urgency=medium . * Team upload. * d/patches/unforce-cxxflags.patch: merge with upstream's flag, especially -std=c++11; forward our patch to upstream. * Silence some false-positive Lintian errors and overrides related to the t64 transition. * Add patch to fix a typo. Checksums-Sha1: 2522e6f9e1f9e614f07a9f7b3193d2fc93c3e38a 384464 libbpp-seq-omics-dev_2.4.1-11_armhf.deb 2b43e949c0e092ba27f069bb314c71ad1aed0c49 6147360 libbpp-seq-omics3t64-dbgsym_2.4.1-11_armhf.deb 4e567a4415d6e853c6bd067411ad0a4042857268 195168 libbpp-seq-omics3t64_2.4.1-11_armhf.deb 9ec8cc872426e4d7ec1e754c51d9cfc1f63ec5dc 6754 libbpp-seq-omics_2.4.1-11_armhf.buildinfo Checksums-Sha256: 3da0cab41c405190539b7f6345b78a239f65526fe7af5d7b38258b21b2e6e8ec 384464 libbpp-seq-omics-dev_2.4.1-11_armhf.deb 1040f50250261a50d64b3ea2ab5b47bdc6e41321e52c987140c140a9b937eca4 6147360 libbpp-seq-omics3t64-dbgsym_2.4.1-11_armhf.deb c42f5f2231c048f545f58760df3384ff3bef99d92efb6d70f474677c349024c2 195168 libbpp-seq-omics3t64_2.4.1-11_armhf.deb b61e5cedd84d5a24c4e32132f661b4f97e89ad1fbbd217b7843a0267309c549d 6754 libbpp-seq-omics_2.4.1-11_armhf.buildinfo Files: b336aaa9415ae8a857cce2605581d348 384464 libdevel optional libbpp-seq-omics-dev_2.4.1-11_armhf.deb 23625971c30fd1f47afb73efce4b7130 6147360 debug optional libbpp-seq-omics3t64-dbgsym_2.4.1-11_armhf.deb f899d0756d402a4f85bb597b61a55b4d 195168 libs optional libbpp-seq-omics3t64_2.4.1-11_armhf.deb 04efc90c25f2284b7ddc656fd10fcd01 6754 science optional libbpp-seq-omics_2.4.1-11_armhf.buildinfo Tue May 21 12:53:54 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_1-3747.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.77YYc5lQ/libbpp-seq-omics_2.4.1-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.77YYc5lQ/libbpp-seq-omics_2.4.1-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.77YYc5lQ/libbpp-seq-omics_2.4.1-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.77YYc5lQ/b1/libbpp-seq-omics_2.4.1-11_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.77YYc5lQ/b2/libbpp-seq-omics_2.4.1-11_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.705s) 0.705s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.106s) 0.106s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.335s CPU time consumed: 1.300s Tue May 21 12:53:56 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Tue May 21 12:53:56 UTC 2024 I: libbpp-seq-omics from unstable built successfully and reproducibly on armhf. Tue May 21 12:53:57 UTC 2024 I: Submitting .buildinfo files to external archives: Tue May 21 12:53:57 UTC 2024 I: Submitting 8.0K b1/libbpp-seq-omics_2.4.1-11_armhf.buildinfo.asc Tue May 21 12:53:58 UTC 2024 I: Submitting 8.0K b2/libbpp-seq-omics_2.4.1-11_armhf.buildinfo.asc Tue May 21 12:53:59 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue May 21 12:53:59 UTC 2024 I: Done submitting .buildinfo files. Tue May 21 12:53:59 UTC 2024 I: Removing signed libbpp-seq-omics_2.4.1-11_armhf.buildinfo.asc files: removed './b1/libbpp-seq-omics_2.4.1-11_armhf.buildinfo.asc' removed './b2/libbpp-seq-omics_2.4.1-11_armhf.buildinfo.asc'