Wed Oct 9 11:00:18 UTC 2024 I: starting to build fast5/unstable/armhf on jenkins on '2024-10-09 10:59' Wed Oct 9 11:00:18 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/5860/console.log Wed Oct 9 11:00:18 UTC 2024 I: Downloading source for unstable/fast5=0.6.5-8 --2024-10-09 11:00:18-- http://deb.debian.org/debian/pool/main/f/fast5/fast5_0.6.5-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2339 (2.3K) [text/prs.lines.tag] Saving to: ‘fast5_0.6.5-8.dsc’ 0K .. 100% 349M=0s 2024-10-09 11:00:18 (349 MB/s) - ‘fast5_0.6.5-8.dsc’ saved [2339/2339] Wed Oct 9 11:00:18 UTC 2024 I: fast5_0.6.5-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: fast5 Binary: fast5, libfast5-dev, python3-fast5 Architecture: any all Version: 0.6.5-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/mateidavid/fast5 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/fast5 Vcs-Git: https://salsa.debian.org/med-team/fast5.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper Package-List: fast5 deb science optional arch=all libfast5-dev deb libdevel optional arch=all python3-fast5 deb python optional arch=any Checksums-Sha1: 21d1ddf5cb3cd0d426dab82480bfc0ef6a52d21e 93639 fast5_0.6.5.orig.tar.gz bab61696c515aa9c303f5bad0fbdcaecc10b1b5c 5668 fast5_0.6.5-8.debian.tar.xz Checksums-Sha256: f8b1ce2c07adb56b4f13337ef008e124255f86cdb7e74e4233afa8dca878ee1a 93639 fast5_0.6.5.orig.tar.gz bede0b27461880d04054de4a97a13b4cbac01ed5025b21f6c75e015111ceffb2 5668 fast5_0.6.5-8.debian.tar.xz Files: 8fa84e045b0b775239413248f7bf5e83 93639 fast5_0.6.5.orig.tar.gz b419b94230561db3b6afff9d5b10e02b 5668 fast5_0.6.5-8.debian.tar.xz Dgit: e4e301368217ac4495c595eb025838aebe652a92 debian archive/debian/0.6.5-8 https://git.dgit.debian.org/fast5 -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmbGA2cUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpUkA//QjwoJUPyCEDI05ZlVEMjRVliSC4y /q4gkA9Sje/+3SqQc3xtuaoroQFdkkQQrbYFZZR58I/sBOztlvB0EvCsEXuH8eNf ojwXxSoPr5lejuFFdf3BW09pQ0LaqibeGwVNaS9W2L4QxaNQ/F5iuhjwrzANDUrl sd5Bq02kvylOM98jyya0GAxE5fGQkZ8zv68JlBLZYgeVAHeSVSAUEZzdRa5Qo8XX EZKoPa9SAQEW0He9wXf+K7ig6N3BnRtwxLLEkCCtWbOjDQqnGM7vwFBTnmMEfGVj uSuiOX8vT2cWoTcgYiIHkkjqKfTR228K3a1JZXn3ZhT08OUp1rhaLEKp+6Qb9dCC 7mFLddrlz78BzHjepAl04BVexHkQPW5qrpa7E7PZ3aQPl/Ky8QYl7mXaEkUXjXrd butll8vZbt2XJOgsrvr1MO5+fM4FI8CS4IKb2dEhM8dyV9v52GevMugHrxDcsirU Si/GePmOMuZGSp7WZ3Aii55n2U9lbI8G6k1Sxot8n/nfPHfrjjfYEJ7W9gVLkSWR 7nqnM3lMJwc56MRifrJ+elc4yvQH6STPIxj3lsOWwXbcYLsRzhVddksflDS3bnLr 6hoExiacAhDufinPZt7nJ1fQMXah7GvJKBfmegckFM92my5S2AVYQ32MVXyGt9Ir YSjGmDKSjbEffps= =PoNG -----END PGP SIGNATURE----- Wed Oct 9 11:00:18 UTC 2024 I: Checking whether the package is not for us Wed Oct 9 11:00:18 UTC 2024 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Wed Oct 9 11:00:18 UTC 2024 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Wed Oct 9 11:15:03 UTC 2024 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 8 23:00:27 -12 2024 I: pbuilder-time-stamp: 1728471627 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fast5_0.6.5-8.dsc] I: copying [./fast5_0.6.5.orig.tar.gz] I: copying [./fast5_0.6.5-8.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Aug 21 15:10:31 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fast5_0.6.5-8.dsc: no acceptable signature found dpkg-source: info: extracting fast5 in fast5-0.6.5 dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.5-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch dpkg-source: info: applying gcc-12.patch dpkg-source: info: applying build-flags.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/16487/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='0419e76a527340ce8dee017f25e3eaf8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='16487' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.H8BIw4ZQ/pbuilderrc_LHUz --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.H8BIw4ZQ/b1 --logfile b1/build.log fast5_0.6.5-8.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-26-armmp #1 SMP Debian 6.1.112-1 (2024-09-30) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/16487/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libhdf5-dev, libboost-python-dev, python3-all-dev, python3-setuptools, cython3, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19519 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libicu72{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnsl2{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 63.9 MB of archives. After unpacking 348 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.7-1 [800 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.3-1 [83.2 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.7-1 [1809 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1 [22.1 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 12 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf libtirpc3t64 armhf 1.3.4+ds-1.3 [71.1 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf libnsl2 armhf 1.3.0-3+b2 [34.9 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-5 [146 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.7-1 [1820 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.7-1 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-9 [88.8 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf cython3 armhf 3.0.11+dfsg-1 [2265 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 45 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.1 [604 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf python3-autocommand all 2.2.2-3 [13.6 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf python3-typeguard all 4.3.0-1 [36.5 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf python3-inflect all 7.3.1-2 [32.4 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf python3-jaraco.context all 6.0.0-1 [7984 B] Get: 59 http://deb.debian.org/debian unstable/main armhf python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 74.1.2-2 [213 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf python3-zipp all 3.20.2-1 [10.3 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf python3-setuptools all 74.1.2-2 [736 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf dh-python all 6.20240824 [109 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf hdf5-helpers armhf 1.10.10+repack-4 [23.5 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libaec0 armhf 1.1.3-1 [21.5 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libsz2 armhf 1.1.3-1 [7724 B] Get: 67 http://deb.debian.org/debian unstable/main armhf libaec-dev armhf 1.1.3-1 [18.8 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libboost1.83-dev armhf 1.83.0-3.2 [10.6 MB] Get: 69 http://deb.debian.org/debian unstable/main armhf libboost-python1.83.0 armhf 1.83.0-3.2 [294 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libpython3.12t64 armhf 3.12.7-1 [1848 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libexpat1-dev armhf 2.6.3-1 [139 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1 [904 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libpython3.12-dev armhf 3.12.7-1 [3808 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libpython3-dev armhf 3.12.6-1 [9952 B] Get: 75 http://deb.debian.org/debian unstable/main armhf python3.12-dev armhf 3.12.7-1 [505 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libjs-sphinxdoc all 7.4.7-3 [158 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf python3-dev armhf 3.12.6-1 [26.1 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libboost-python1.83-dev armhf 1.83.0-3.2 [321 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libboost-python-dev armhf 1.83.0.2+b2 [3884 B] Get: 82 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b4 [293 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b4 [292 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3 [163 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.63.0-1 [62.9 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-7 [199 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.10.1-1 [303 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libidn2-dev armhf 2.3.7-2 [119 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-3 [31.7 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-3 [29.1 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-3 [26.1 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libnghttp2-dev armhf 1.63.0-1 [103 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1 [76.6 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-2+b1 [328 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-2+b1 [591 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10 [164 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libunbound8 armhf 1.21.1-1 [534 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libgnutls-dane0t64 armhf 3.8.6-2 [432 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libgnutls-openssl27t64 armhf 3.8.6-2 [432 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libp11-kit-dev armhf 0.25.5-2 [208 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf libtasn1-6-dev armhf 4.19.0-3+b2 [93.0 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf nettle-dev armhf 3.10-1 [1313 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libgnutls28-dev armhf 3.8.6-2 [1319 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b4 [63.5 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libssl-dev armhf 3.3.2-1 [2384 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libssh2-1-dev armhf 1.11.0-7 [342 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.6+dfsg-1 [326 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libcurl4-openssl-dev armhf 8.10.1-1 [423 kB] Get: 113 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14.2.0-6 [263 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libhdf5-103-1t64 armhf 1.10.10+repack-4 [1196 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libhdf5-cpp-103-1t64 armhf 1.10.10+repack-4 [121 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libhdf5-fortran-102t64 armhf 1.10.10+repack-4 [78.5 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-100t64 armhf 1.10.10+repack-4 [62.3 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-fortran-100t64 armhf 1.10.10+repack-4 [35.1 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf libhdf5-hl-cpp-100t64 armhf 1.10.10+repack-4 [21.0 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-3 [143 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-3 [260 kB] Get: 122 http://deb.debian.org/debian unstable/main armhf libjpeg-dev armhf 1:2.1.5-3 [71.9 kB] Get: 123 http://deb.debian.org/debian unstable/main armhf libhdf5-dev armhf 1.10.10+repack-4 [2616 kB] Get: 124 http://deb.debian.org/debian unstable/main armhf libpython3-all-dev armhf 3.12.6-1 [1064 B] Get: 125 http://deb.debian.org/debian unstable/main armhf python3-all armhf 3.12.6-1 [1040 B] Get: 126 http://deb.debian.org/debian unstable/main armhf python3-all-dev armhf 3.12.6-1 [1068 B] Fetched 63.9 MB in 6s (9850 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19519 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-1_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.7-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.3-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-1_armhf.deb ... Unpacking python3.12-minimal (3.12.7-1) ... Setting up libpython3.12-minimal:armhf (3.12.7-1) ... Setting up libexpat1:armhf (2.6.3-1) ... Setting up python3.12-minimal (3.12.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_armhf.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../04-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../05-libcom-err2_1.47.1-1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../06-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../07-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../08-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:armhf. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3 to /lib/arm-linux-gnueabihf/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:armhf (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:armhf. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_armhf.deb ... Unpacking libnsl2:armhf (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../14-libreadline8t64_8.2-5_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-1_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.7-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-1_armhf.deb ... Unpacking python3.12 (3.12.7-1) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20899 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_armhf.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_armhf.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../006-libuchardet0_0.0.8-1+b1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b1) ... Selecting previously unselected package groff-base. 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Setting up libtasn1-6-dev:armhf (4.19.0-3+b2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libbrotli-dev:armhf (1.1.0-2+b4) ... Setting up libp11-kit-dev:armhf (0.25.5-2) ... Setting up libsz2:armhf (1.1.3-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:armhf (2:6.3.0+dfsg-2+b1) ... Setting up nettle-dev:armhf (3.10-1) ... Setting up libtool (2.4.7-7) ... Setting up libaec-dev:armhf (1.1.3-1) ... Setting up libjpeg-dev:armhf (1:2.1.5-3) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-3) ... Setting up pkgconf:armhf (1.8.1-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... 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Setting up libhdf5-fortran-102t64:armhf (1.10.10+repack-4) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:armhf (3.12.7-1) ... Setting up libcurl4-openssl-dev:armhf (8.10.1-1) ... Setting up libhdf5-hl-cpp-100t64:armhf (1.10.10+repack-4) ... Setting up libpython3-stdlib:armhf (3.12.6-1) ... Setting up libhdf5-hl-fortran-100t64:armhf (1.10.10+repack-4) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:armhf (3.12.7-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3.12-dev (3.12.7-1) ... Setting up cython3 (3.0.11+dfsg-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:armhf (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:armhf (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up libboost-python1.83-dev (1.83.0-3.2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up dh-python (6.20240824) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fast5-0.6.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fast5_0.6.5-8_source.changes dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp debian/rules clean dh clean --with python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/reproducible-path/fast5-0.6.5/src' dh_auto_clean I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/build/reproducible-path/fast5-0.6.5/.pybuild/cpython3_3.12_fast5/build' (and everything under it) 'build/bdist.linux-armv7l' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules binary dh binary --with python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-armv7l-cpython-312 creating build/temp.linux-armv7l-cpython-312/fast5 arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -fPIC -I../include -I../src -I/usr/include/python3.12 -c fast5/fast5.cpp -o build/temp.linux-armv7l-cpython-312/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API build/temp.linux-armv7l-cpython-312/fast5/fast5.o -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -L/usr/lib/arm-linux-gnueabihf -lhdf5 -o /build/reproducible-path/fast5-0.6.5/.pybuild/cpython3_3.12_fast5/build/fast5.cpython-312-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.12 copying and adjusting bin/f5ls -> build/scripts-3.12 copying and adjusting bin/f5pack -> build/scripts-3.12 changing mode of build/scripts-3.12/f5ls from 644 to 755 changing mode of build/scripts-3.12/f5pack from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' cd src && /usr/bin/make make[2]: Entering directory '/build/reproducible-path/fast5-0.6.5/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o f5ls f5ls.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/14/vector:65, from /build/reproducible-path/fast5-0.6.5/src/../include/fast5.hpp:19, from f5ls.cpp:12: /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = long long int*; _Tp = long long int]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from f5ls.cpp:9: /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = long long int*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 642 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:48: /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = long long int*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2977 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 642 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2977 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o f5ls-full f5ls-full.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/14/vector:65, from /build/reproducible-path/fast5-0.6.5/src/../include/fast5.hpp:19, from f5ls-full.cpp:12: /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = long long int*; _ForwardIterator = long long int*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::EventDetection_Event*; _ForwardIterator = fast5::EventDetection_Event*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Event*; _ForwardIterator = fast5::Basecall_Event*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Alignment_Entry*; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = long long int*; _Tp = long long int]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*; _Tp = fast5::EventDetection_Event]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*; _Tp = fast5::Basecall_Event]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*; _Tp = fast5::Basecall_Alignment_Entry]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = fast5::Basecall_Model_State*; _ForwardIterator = fast5::Basecall_Model_State*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*; _Tp = fast5::Basecall_Model_State]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = long long int*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:51, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from f5ls-full.cpp:9: /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = long long int*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 642 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 145 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:145:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:147:27: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 147 | { return std::copy(__first, __last, __result); } | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:48: /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = long long int*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2977 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::EventDetection_Event*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Event*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Alignment_Entry*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_algobase.h: In function ‘_OI std::copy(_II, _II, _OI) [with _II = move_iterator; _OI = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 642 | copy(_II __first, _II __last, _OI __result) | ^~~~ /usr/include/c++/14/bits/stl_algobase.h:642:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_iterator.h: In function ‘decltype (std::__miter_base(__it.base())) std::__miter_base(move_iterator<_IteratorL>) [with _Iterator = fast5::Basecall_Model_State*]’: /usr/include/c++/14/bits/stl_iterator.h:2977:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 2977 | __miter_base(move_iterator<_Iterator> __it) | ^~~~~~~~~~~~ g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o hdf5-mod hdf5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/14/vector:65, from /build/reproducible-path/fast5-0.6.5/src/../include/fast5/hdf5_tools.hpp:21, from hdf5-mod.cpp:12: /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fast5-0.6.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -DH5_USE_110_API -isystem /usr/include/hdf5/serial -I /build/reproducible-path/fast5-0.6.5/src/../include -o f5-mod f5-mod.cpp -Wl,-z,relro -Wl,-z,now -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -Wl,--rpath=/usr/lib/arm-linux-gnueabihf/hdf5/serial -lhdf5 -lpthread -lz -ldl In file included from /usr/include/c++/14/vector:65, from /build/reproducible-path/fast5-0.6.5/src/../include/fast5.hpp:19, from f5-mod.cpp:12: /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = hdf5_tools::detail::Compound_Member_Description*; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Allocator = allocator]’: /usr/include/c++/14/bits/stl_uninitialized.h:399:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 398 | return std::__uninitialized_copy_a | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 | (_GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__first), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 | _GLIBCXX_MAKE_MOVE_IF_NOEXCEPT_ITERATOR(__last), __result, __alloc); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; _Tp = hdf5_tools::detail::Compound_Member_Description]’: /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 366 | __uninitialized_copy_a(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:366:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:373:37: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 373 | return std::uninitialized_copy(__first, __last, __result); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 163 | uninitialized_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:163:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:185:22: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 184 | return std::__uninitialized_copy<__can_memmove && __assignable>:: | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 | __uninit_copy(__first, __last, __result); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*; bool _TrivialValueTypes = false]’: /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 135 | __uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:135:9: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/include/c++/14/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = hdf5_tools::detail::Compound_Member_Description*]’: /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 make[2]: Leaving directory '/build/reproducible-path/fast5-0.6.5/src' make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/fast5-0.6.5/debian/python3-fast5 running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running build_scripts running install_lib creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5 creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12 creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12/dist-packages copying /build/reproducible-path/fast5-0.6.5/.pybuild/cpython3_3.12_fast5/build/fast5.cpython-312-arm-linux-gnueabihf.so -> /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt writing manifest file 'fast5.egg-info/SOURCES.txt' dependency ../include/fast5.hpp won't be automatically included in the manifest: the path can't have `..` segments dependency ../src/File_Packer.hpp won't be automatically included in the manifest: the path can't have `..` segments reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.12/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.12/f5ls -> /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.12/f5pack -> /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin changing mode of /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin/f5ls to 755 changing mode of /build/reproducible-path/fast5-0.6.5/debian/python3-fast5/usr/bin/f5pack to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -O--buildsystem=pybuild -O--sourcedirectory=python dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=python dh_installsystemduser -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/reproducible-path/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/reproducible-path/fast5-0.6.5/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/build/reproducible-path/fast5-0.6.5' dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -O--buildsystem=pybuild -O--sourcedirectory=python dh_dwz -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -a -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -a -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=python dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-deb: building package 'fast5' in '../fast5_0.6.5-8_all.deb'. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-8_armhf.deb'. dpkg-deb: building package 'libfast5-dev' in '../libfast5-dev_0.6.5-8_all.deb'. dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.5-8_armhf.deb'. dpkg-genbuildinfo --build=binary -O../fast5_0.6.5-8_armhf.buildinfo dpkg-genchanges --build=binary -O../fast5_0.6.5-8_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/16487 and its subdirectories I: Current time: Tue Oct 8 23:14:54 -12 2024 I: pbuilder-time-stamp: 1728472494 Wed Oct 9 11:15:05 UTC 2024 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Wed Oct 9 11:15:05 UTC 2024 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Wed Oct 9 11:22:55 UTC 2024 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Wed Oct 9 11:22:57 UTC 2024 I: fast5_0.6.5-8_armhf.changes: Format: 1.8 Date: Wed, 21 Aug 2024 16:53:26 +0200 Source: fast5 Binary: fast5 libfast5-dev python3-fast5 python3-fast5-dbgsym Architecture: all armhf Version: 0.6.5-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: fast5 - utilities for manipulating Oxford Nanopore Fast5 files libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3 Closes: 1078976 Changes: fast5 (0.6.5-8) unstable; urgency=medium . * d/control: set CPPFLAGS to add -DH5_USE_110_API. This fixes build failure with hdfs5 1.14. Thanks to Gilles Filippini (Closes: #1078976) * d/control: declare compliance to standards version 4.7.0. Checksums-Sha1: 6cbc2c994bb0aaf7d880799b87a0c0a8e3a89997 7172 fast5_0.6.5-8_all.deb 3a6c7f3d367f2dec25db1f1e5a2427064f56279f 8632 fast5_0.6.5-8_armhf.buildinfo 674878e9bbcef94a99236b66deee64f10cd83a33 49008 libfast5-dev_0.6.5-8_all.deb 09cbf49dfffad9b5c6de76fbf60a182a4b65b2cc 2666396 python3-fast5-dbgsym_0.6.5-8_armhf.deb 546d4288706be5c5221f2760ff8d78290ed437f5 226272 python3-fast5_0.6.5-8_armhf.deb Checksums-Sha256: 9c35b495f4eb6638e686134c1c47aeb00b27d7d7e3387e122ee5f09b191795e7 7172 fast5_0.6.5-8_all.deb 05ef43b807f78af68c41955d0822a1920836bcf14c93544e3bb2d11abfb7bd90 8632 fast5_0.6.5-8_armhf.buildinfo 58ffc26c4efe078386a4b01a3c0e0fb389e12f700234ae94380ee1cf8fe091fb 49008 libfast5-dev_0.6.5-8_all.deb 7f9593e68eda1fd8361d2fc444937d476c9644a6ffba95de93337fc9cc55b57a 2666396 python3-fast5-dbgsym_0.6.5-8_armhf.deb dc547ffc34256c3124c2f312c75780f1db53d1d92e7b7f40cb10f46224cd1dcc 226272 python3-fast5_0.6.5-8_armhf.deb Files: 4c8d506555ab9635ef2cb835bc476684 7172 science optional fast5_0.6.5-8_all.deb 16f4a957385026f85317fa24d7e7edf6 8632 science optional fast5_0.6.5-8_armhf.buildinfo 45092099054b7d963c2dfc1e45857307 49008 libdevel optional libfast5-dev_0.6.5-8_all.deb 579c1e1f6d59e88294cf37aef82b931b 2666396 debug optional python3-fast5-dbgsym_0.6.5-8_armhf.deb dd514645c3c94fdeeef05cd2fc2976cd 226272 python optional python3-fast5_0.6.5-8_armhf.deb Wed Oct 9 11:22:59 UTC 2024 I: diffoscope 278 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_11-5860.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.H8BIw4ZQ/fast5_0.6.5-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.H8BIw4ZQ/fast5_0.6.5-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.H8BIw4ZQ/fast5_0.6.5-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.H8BIw4ZQ/b1/fast5_0.6.5-8_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.H8BIw4ZQ/b2/fast5_0.6.5-8_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.402s) 0.402s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.048s) 0.048s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 728ms CPU time consumed: 725ms Wed Oct 9 11:23:00 UTC 2024 I: diffoscope 278 found no differences in the changes files, and a .buildinfo file also exists. Wed Oct 9 11:23:00 UTC 2024 I: fast5 from unstable built successfully and reproducibly on armhf. Wed Oct 9 11:23:01 UTC 2024 I: Submitting .buildinfo files to external archives: Wed Oct 9 11:23:01 UTC 2024 I: Submitting 12K b1/fast5_0.6.5-8_armhf.buildinfo.asc Wed Oct 9 11:23:02 UTC 2024 I: Submitting 12K b2/fast5_0.6.5-8_armhf.buildinfo.asc Wed Oct 9 11:23:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Oct 9 11:23:02 UTC 2024 I: Done submitting .buildinfo files. Wed Oct 9 11:23:02 UTC 2024 I: Removing signed fast5_0.6.5-8_armhf.buildinfo.asc files: removed './b1/fast5_0.6.5-8_armhf.buildinfo.asc' removed './b2/fast5_0.6.5-8_armhf.buildinfo.asc'