Thu Apr 18 05:26:29 UTC 2024 I: starting to build density-fitness/unstable/armhf on jenkins on '2024-04-18 05:26' Thu Apr 18 05:26:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_31/2615/console.log Thu Apr 18 05:26:29 UTC 2024 I: Downloading source for unstable/density-fitness=1.0.8-4 --2024-04-18 05:26:30-- http://deb.debian.org/debian/pool/main/d/density-fitness/density-fitness_1.0.8-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘density-fitness_1.0.8-4.dsc’ 0K .. 100% 338M=0s 2024-04-18 05:26:30 (338 MB/s) - ‘density-fitness_1.0.8-4.dsc’ saved [2224/2224] Thu Apr 18 05:26:30 UTC 2024 I: density-fitness_1.0.8-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: density-fitness Binary: density-fitness Architecture: any Version: 1.0.8-4 Maintainer: Debian Med Packaging Team Uploaders: Maarten L. Hekkelman Homepage: https://github.com/PDB-REDO/density-fitness Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/density-fitness Vcs-Git: https://salsa.debian.org/med-team/density-fitness.git Testsuite: autopkgtest Testsuite-Triggers: libcifpp-dev, libpdb-redo-dev Build-Depends: debhelper-compat (= 13), libcifpp-dev (>= 5.0.5-2~), libpdb-redo-dev (>= 3.0.5-2~), libzeep-dev, libmcfp-dev, zlib1g-dev, cmake, mrc Package-List: density-fitness deb science optional arch=any Checksums-Sha1: 24af463c785692d5a853643c5350cae554b9dfbd 775815 density-fitness_1.0.8.orig.tar.gz 082f8549f948aad9de637a69990fe5c0e5d74049 3432 density-fitness_1.0.8-4.debian.tar.xz Checksums-Sha256: 875d15686065c8cd9f442c77a5e4cf48f0fe1a4e9b647ac573def5feea8e9b5d 775815 density-fitness_1.0.8.orig.tar.gz 48bf328a5cff1ce35e71d832b5506fd9f6e696de7ddbcef802a22813c7031cfb 3432 density-fitness_1.0.8-4.debian.tar.xz Files: 93c306db0dd99a7d9efc97d5aaa0abbe 775815 density-fitness_1.0.8.orig.tar.gz 550f34450e0499003eeb70965ff33d56 3432 density-fitness_1.0.8-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJKBAEBCgA0FiEEpytoJCJrtAfiS56AWHUD7Hrn7c4FAmPeHHAWHG1hYXJ0ZW5A aGVra2VsbWFuLmNvbQAKCRBYdQPseuftzhZqEACKRIivYF0DIH4/hmcRojCXZgy3 jaWM3Umc+NTyQL+KDeyo+GOzdwn8O0dpy7ZcxrKBgANGx0wmmeIxQSOTXl1D+P3+ 0IB9QSlQTtgenH8laOcsqQtgSwtkzOYecY8IIrH9Wh8XDuWFlIwQHGj4aDWqaQQ1 O8AhbDQ+Iy37gmJB7td10AwnVn8ZbydX2xc+ER8soQpp1eMLpcjh9sgHk49l5lth voGalKP4drZuPLnOTwTLOD3j/vcddG/7zypuTttxwUNHMi4L6xKHv5Dxitb4M8jQ IaYlRSntZQ1oFb5fIKzkZ/U0E18PqhThb9onX0nslIKj31sIWKrQ+7GmxhQqwn8Z HOn77ceQOSY3G6H9E+1TpkuKq8/WlppRpuxXkvQu7ZPxlmYKJ4gp9D/npfP/z3R4 P6zrHDCiZnV97XRHhJjlE/vJYASRXHOy3v1csaWBL9ffFWWer8btUnzhX3jAA1Rn CRT79nwR9AW+jRC4OYnhjtVZlMPUZwDlXfUkOEzB966EXWmWjfR3UV+zurpv/6hR /E9mXCZAg5MSGX2R3M2SkWn7OC1uHku/DNVQG+d7lQvCPI1vIhAnIWnq+5FT7BCQ NwdTAeBoTrxxJDrzg+nsTU2ZSsdRDd4/3pYEwn3qcEqnDl+fGNFpZeM1YzYygDc4 fu1vYBErjxwxSZ3VZw== =pv+d -----END PGP SIGNATURE----- Thu Apr 18 05:26:30 UTC 2024 I: Checking whether the package is not for us Thu Apr 18 05:26:30 UTC 2024 I: Starting 1st build on remote node virt64c-armhf-rb.debian.net. Thu Apr 18 05:26:30 UTC 2024 I: Preparing to do remote build '1' on virt64c-armhf-rb.debian.net. Thu Apr 18 05:30:31 UTC 2024 I: Deleting $TMPDIR on virt64c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 17 17:26:37 -12 2024 I: pbuilder-time-stamp: 1713417997 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [density-fitness_1.0.8-4.dsc] I: copying [./density-fitness_1.0.8.orig.tar.gz] I: copying [./density-fitness_1.0.8-4.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Feb 4 08:50:56 2023 gpgv: using RSA key A72B6824226BB407E24B9E80587503EC7AE7EDCE gpgv: issuer "maarten@hekkelman.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./density-fitness_1.0.8-4.dsc: no acceptable signature found dpkg-source: info: extracting density-fitness in density-fitness-1.0.8 dpkg-source: info: unpacking density-fitness_1.0.8.orig.tar.gz dpkg-source: info: unpacking density-fitness_1.0.8-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/16021/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='2e6d07a04fea4787a2583693f351636f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='16021' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.CnaRK1wJ/pbuilderrc_Iuyc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.CnaRK1wJ/b1 --logfile b1/build.log density-fitness_1.0.8-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-20-arm64 #1 SMP Debian 6.1.85-1 (2024-04-11) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Apr 17 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/16021/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libcifpp-dev (>= 5.0.5-2~), libpdb-redo-dev (>= 3.0.5-2~), libzeep-dev, libmcfp-dev, zlib1g-dev, cmake, mrc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19442 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libcifpp-dev (>= 5.0.5-2~); however: Package libcifpp-dev is not installed. pbuilder-satisfydepends-dummy depends on libpdb-redo-dev (>= 3.0.5-2~); however: Package libpdb-redo-dev is not installed. pbuilder-satisfydepends-dummy depends on libzeep-dev; however: Package libzeep-dev is not installed. pbuilder-satisfydepends-dummy depends on libmcfp-dev; however: Package libmcfp-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on mrc; however: Package mrc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} fftw-dev{a} fftw2{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libbsd0{a} libccp4-data{a} libccp4-dev{a} libccp4c0{a} libccp4f0{a} libcifpp-data{a} libcifpp-dev{a} libcifpp5{a} libclipper-dev{a} libclipper2{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-core-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libfabric1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgsl-dev{a} libgsl27{a} libgslcblas0{a} libgssapi-krb5-2{a} libhwloc-plugins{a} libhwloc15{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmcfp-dev{a} libmmdb2-0{a} libmmdb2-dev{a} libnewuoa-dev{a} libnewuoa0{a} libnghttp2-14{a} libnl-3-200{a} libnl-route-3-200{a} libopenmpi3t64{a} libpciaccess0{a} libpdb-redo-dev{a} libpdb-redo3{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librdmacm1t64{a} librhash0{a} librtmp1{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} libzeep-dev{a} libzeep5.1{a} m4{a} man-db{a} mrc{a} ocl-icd-libopencl1{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} sfftw-dev{a} sfftw2{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl ibverbs-providers krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libssl3 lynx psmisc publicsuffix wget 0 packages upgraded, 121 newly installed, 0 to remove and 0 not upgraded. Need to get 66.1 MB of archives. After unpacking 389 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-4 [55.7 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-4 [864 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.21-14+b1 [157 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-3+b1 [1091 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40-6 [85.2 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-1 [1375 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-4+b1 [9070 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.9.14+dfsg-1.3+b2 [599 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.2-2 [304 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b3 [284 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.20.1-6+b1 [30.6 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.0-2.4 [19.5 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.20.1-6+b1 [75.5 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-3 [7908 B] Get: 26 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.20.1-6+b1 [290 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.20.1-6+b1 [112 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.61.0-1 [63.0 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1 [55.6 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b4 [53.2 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.0-4.1+b2 [198 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.7.1-2 [391 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf libjsoncpp25 armhf 1.9.5-6+b2 [69.9 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf librhash0 armhf 1.4.3-3+b1 [143 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-1.1 [134 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.28.3-1 [2128 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.28.3-1+b2 [5115 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.15.3 [88.0 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libsub-override-perl all 0.10-1 [10.6 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 46 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-1+b1 [183 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.21-14+b1 [1230 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf debhelper all 13.15.3 [901 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libevent-core-2.1-7t64 armhf 2.1.12-stable-8.1+b3 [122 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libevent-pthreads-2.1-7t64 armhf 2.1.12-stable-8.1+b3 [53.8 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libnl-3-200 armhf 3.7.0-0.3 [51.7 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libnl-route-3-200 armhf 3.7.0-0.3 [153 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libibverbs1 armhf 50.0-2+b1 [55.0 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf librdmacm1t64 armhf 50.0-2+b1 [62.1 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libfabric1 armhf 1.17.0-3+b1 [386 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf libhwloc15 armhf 2.10.0-1+b1 [133 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libpciaccess0 armhf 0.17-3 [49.0 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libbsd0 armhf 0.12.2-1 [127 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libxcb1 armhf 1.15-1 [140 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libx11-data all 2:1.8.7-1 [328 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libx11-6 armhf 2:1.8.7-1 [735 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b1 [47.8 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libxnvctrl0 armhf 535.171.04-1 [12.8 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf ocl-icd-libopencl1 armhf 2.3.2-1+b1 [37.3 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libhwloc-plugins armhf 2.10.0-1+b1 [16.1 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libopenmpi3t64 armhf 4.1.6-12 [2087 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf fftw2 armhf 2.1.5-6+b1 [189 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf fftw-dev armhf 2.1.5-6+b1 [219 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf icu-devtools armhf 72.1-4+b1 [185 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libboost1.83-dev armhf 1.83.0-2.1+b1 [10.6 MB] Get: 76 http://deb.debian.org/debian unstable/main armhf libboost-date-time1.83.0 armhf 1.83.0-2.1+b1 [230 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libboost-serialization1.83.0 armhf 1.83.0-2.1+b1 [315 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libboost-serialization1.83-dev armhf 1.83.0-2.1+b1 [385 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libboost-date-time1.83-dev armhf 1.83.0-2.1+b1 [239 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libboost-date-time-dev armhf 1.83.0.2+b2 [3584 B] Get: 81 http://deb.debian.org/debian unstable/main armhf libboost-dev armhf 1.83.0.2+b2 [3832 B] Get: 82 http://deb.debian.org/debian unstable/main armhf libboost-program-options1.83.0 armhf 1.83.0-2.1+b1 [327 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libboost-program-options1.83-dev armhf 1.83.0-2.1+b1 [370 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libboost-program-options-dev armhf 1.83.0.2+b2 [3604 B] Get: 85 http://deb.debian.org/debian unstable/main armhf libboost-regex1.83.0 armhf 1.83.0-2.1+b1 [307 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libicu-dev armhf 72.1-4+b1 [10.1 MB] Get: 87 http://deb.debian.org/debian unstable/main armhf libboost-regex1.83-dev armhf 1.83.0-2.1+b1 [335 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libboost-regex-dev armhf 1.83.0.2+b2 [3856 B] Get: 89 http://deb.debian.org/debian unstable/main armhf libboost-system1.83.0 armhf 1.83.0-2.1+b1 [230 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libboost-system1.83-dev armhf 1.83.0-2.1+b1 [231 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libboost-system-dev armhf 1.83.0.2+b2 [3724 B] Get: 92 http://deb.debian.org/debian unstable/main armhf libccp4-data all 8.0.0-2 [62.3 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libccp4c0 armhf 8.0.0-2 [75.2 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libgfortran5 armhf 14-20240330-1 [264 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libmmdb2-0 armhf 2.0.22-1+b1 [280 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libccp4f0 armhf 8.0.0-2 [194 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libccp4-dev armhf 8.0.0-2 [42.8 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libcifpp-data all 5.0.7.1-3 [452 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libcifpp5 armhf 5.0.7.1-3+b1 [741 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg-3.1 [904 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libcifpp-dev armhf 5.0.7.1-3+b1 [86.5 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf sfftw2 armhf 2.1.5-6+b1 [191 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf libclipper2 armhf 2.1.20201109-2+b1 [1093 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf libmmdb2-dev armhf 2.0.22-1+b1 [92.9 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf sfftw-dev armhf 2.1.5-6+b1 [222 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libclipper-dev armhf 2.1.20201109-2+b1 [82.4 kB] Get: 107 http://deb.debian.org/debian unstable/main armhf libgslcblas0 armhf 2.7.1+dfsg-6+b1 [79.6 kB] Get: 108 http://deb.debian.org/debian unstable/main armhf libgsl27 armhf 2.7.1+dfsg-6+b1 [767 kB] Get: 109 http://deb.debian.org/debian unstable/main armhf libgsl-dev armhf 2.7.1+dfsg-6+b1 [975 kB] Get: 110 http://deb.debian.org/debian unstable/main armhf libmcfp-dev armhf 1.2.4-1 [16.0 kB] Get: 111 http://deb.debian.org/debian unstable/main armhf libnewuoa0 armhf 0.1.2-1 [15.4 kB] Get: 112 http://deb.debian.org/debian unstable/main armhf libnewuoa-dev armhf 0.1.2-1 [7504 B] Get: 113 http://deb.debian.org/debian unstable/main armhf libpdb-redo3 armhf 3.0.5-2 [282 kB] Get: 114 http://deb.debian.org/debian unstable/main armhf libpdb-redo-dev armhf 3.0.5-2 [627 kB] Get: 115 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-1+b2 [31.9 kB] Get: 116 http://deb.debian.org/debian unstable/main armhf libzeep5.1 armhf 5.1.8-1+b1 [544 kB] Get: 117 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-1+b2 [28.9 kB] Get: 118 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-1+b2 [26.2 kB] Get: 119 http://deb.debian.org/debian unstable/main armhf pkg-config armhf 1.8.1-1+b2 [14.0 kB] Get: 120 http://deb.debian.org/debian unstable/main armhf libzeep-dev armhf 5.1.8-1+b1 [78.4 kB] Get: 121 http://deb.debian.org/debian unstable/main armhf mrc armhf 1.3.10-1 [45.8 kB] Fetched 66.1 MB in 5s (13.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19442 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-4_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-4_armhf.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.22_all.deb ... 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Unpacking libkrb5support0:armhf (1.20.1-6+b1) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../022-libcom-err2_1.47.0-2.4_armhf.deb ... Unpacking libcom-err2:armhf (1.47.0-2.4) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../023-libk5crypto3_1.20.1-6+b1_armhf.deb ... Unpacking libk5crypto3:armhf (1.20.1-6+b1) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../024-libkeyutils1_1.6.3-3_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../025-libkrb5-3_1.20.1-6+b1_armhf.deb ... Unpacking libkrb5-3:armhf (1.20.1-6+b1) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../026-libgssapi-krb5-2_1.20.1-6+b1_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.20.1-6+b1) ... Selecting previously unselected package libnghttp2-14:armhf. Preparing to unpack .../027-libnghttp2-14_1.61.0-1_armhf.deb ... Unpacking libnghttp2-14:armhf (1.61.0-1) ... Selecting previously unselected package libpsl5t64:armhf. Preparing to unpack .../028-libpsl5t64_0.21.2-1.1_armhf.deb ... Unpacking libpsl5t64:armhf (0.21.2-1.1) ... Selecting previously unselected package librtmp1:armhf. Preparing to unpack .../029-librtmp1_2.4+20151223.gitfa8646d.1-2+b4_armhf.deb ... Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b4) ... Selecting previously unselected package libssh2-1t64:armhf. Preparing to unpack .../030-libssh2-1t64_1.11.0-4.1+b2_armhf.deb ... Unpacking libssh2-1t64:armhf (1.11.0-4.1+b2) ... Selecting previously unselected package libcurl4t64:armhf. Preparing to unpack .../031-libcurl4t64_8.7.1-2_armhf.deb ... Unpacking libcurl4t64:armhf (8.7.1-2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../032-libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... 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Unpacking dh-strip-nondeterminism (1.13.1-1) ... Selecting previously unselected package libelf1t64:armhf. Preparing to unpack .../045-libelf1t64_0.191-1+b1_armhf.deb ... Unpacking libelf1t64:armhf (0.191-1+b1) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.15-1+b2_armhf.deb ... Unpacking dwz (0.15-1+b2) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.21-14+b1_armhf.deb ... Unpacking gettext (0.21-14+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.15.3_all.deb ... Unpacking debhelper (13.15.3) ... Selecting previously unselected package libevent-core-2.1-7t64:armhf. Preparing to unpack .../051-libevent-core-2.1-7t64_2.1.12-stable-8.1+b3_armhf.deb ... Unpacking libevent-core-2.1-7t64:armhf (2.1.12-stable-8.1+b3) ... Selecting previously unselected package libevent-pthreads-2.1-7t64:armhf. Preparing to unpack .../052-libevent-pthreads-2.1-7t64_2.1.12-stable-8.1+b3_armhf.deb ... Unpacking libevent-pthreads-2.1-7t64:armhf (2.1.12-stable-8.1+b3) ... Selecting previously unselected package libnl-3-200:armhf. Preparing to unpack .../053-libnl-3-200_3.7.0-0.3_armhf.deb ... Unpacking libnl-3-200:armhf (3.7.0-0.3) ... Selecting previously unselected package libnl-route-3-200:armhf. Preparing to unpack .../054-libnl-route-3-200_3.7.0-0.3_armhf.deb ... Unpacking libnl-route-3-200:armhf (3.7.0-0.3) ... Selecting previously unselected package libibverbs1:armhf. Preparing to unpack .../055-libibverbs1_50.0-2+b1_armhf.deb ... Unpacking libibverbs1:armhf (50.0-2+b1) ... Selecting previously unselected package librdmacm1t64:armhf. Preparing to unpack .../056-librdmacm1t64_50.0-2+b1_armhf.deb ... Unpacking librdmacm1t64:armhf (50.0-2+b1) ... Selecting previously unselected package libfabric1:armhf. Preparing to unpack .../057-libfabric1_1.17.0-3+b1_armhf.deb ... Unpacking libfabric1:armhf (1.17.0-3+b1) ... Selecting previously unselected package libhwloc15:armhf. Preparing to unpack .../058-libhwloc15_2.10.0-1+b1_armhf.deb ... Unpacking libhwloc15:armhf (2.10.0-1+b1) ... Selecting previously unselected package libpciaccess0:armhf. Preparing to unpack .../059-libpciaccess0_0.17-3_armhf.deb ... Unpacking libpciaccess0:armhf (0.17-3) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../060-libxau6_1%3a1.0.9-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.9-1) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../061-libbsd0_0.12.2-1_armhf.deb ... Unpacking libbsd0:armhf (0.12.2-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../062-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../063-libxcb1_1.15-1_armhf.deb ... Unpacking libxcb1:armhf (1.15-1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../064-libx11-data_2%3a1.8.7-1_all.deb ... Unpacking libx11-data (2:1.8.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../065-libx11-6_2%3a1.8.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.8.7-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../066-libxext6_2%3a1.3.4-1+b1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.4-1+b1) ... Selecting previously unselected package libxnvctrl0:armhf. Preparing to unpack .../067-libxnvctrl0_535.171.04-1_armhf.deb ... Unpacking libxnvctrl0:armhf (535.171.04-1) ... Selecting previously unselected package ocl-icd-libopencl1:armhf. Preparing to unpack .../068-ocl-icd-libopencl1_2.3.2-1+b1_armhf.deb ... Unpacking ocl-icd-libopencl1:armhf (2.3.2-1+b1) ... Selecting previously unselected package libhwloc-plugins:armhf. Preparing to unpack .../069-libhwloc-plugins_2.10.0-1+b1_armhf.deb ... Unpacking libhwloc-plugins:armhf (2.10.0-1+b1) ... Selecting previously unselected package libopenmpi3t64:armhf. Preparing to unpack .../070-libopenmpi3t64_4.1.6-12_armhf.deb ... Unpacking libopenmpi3t64:armhf (4.1.6-12) ... Selecting previously unselected package fftw2. Preparing to unpack .../071-fftw2_2.1.5-6+b1_armhf.deb ... Unpacking fftw2 (2.1.5-6+b1) ... Selecting previously unselected package fftw-dev. Preparing to unpack .../072-fftw-dev_2.1.5-6+b1_armhf.deb ... Unpacking fftw-dev (2.1.5-6+b1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../073-icu-devtools_72.1-4+b1_armhf.deb ... Unpacking icu-devtools (72.1-4+b1) ... Selecting previously unselected package libboost1.83-dev:armhf. Preparing to unpack .../074-libboost1.83-dev_1.83.0-2.1+b1_armhf.deb ... Unpacking libboost1.83-dev:armhf (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-date-time1.83.0:armhf. Preparing to unpack .../075-libboost-date-time1.83.0_1.83.0-2.1+b1_armhf.deb ... Unpacking libboost-date-time1.83.0:armhf (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-serialization1.83.0:armhf. Preparing to unpack .../076-libboost-serialization1.83.0_1.83.0-2.1+b1_armhf.deb ... Unpacking libboost-serialization1.83.0:armhf (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-serialization1.83-dev:armhf. Preparing to unpack .../077-libboost-serialization1.83-dev_1.83.0-2.1+b1_armhf.deb ... Unpacking libboost-serialization1.83-dev:armhf (1.83.0-2.1+b1) ... Selecting previously unselected package libboost-date-time1.83-dev:armhf. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/density-fitness-1.0.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../density-fitness_1.0.8-4_source.changes dpkg-buildpackage: info: source package density-fitness dpkg-buildpackage: info: source version 1.0.8-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Maarten L. Hekkelman dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at CMakeLists.txt:38 (include): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake-3.28/Modules/Dart.cmake:47 (message): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:38 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Mrc: /usr/bin/mrc (found version "1.3.10") Using resources compiled with /usr/bin/mrc -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.70.0") found components: system date_time regex -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3") -- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: regex -- Looking for ccp4/ccp4_general.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libccp4c.so -- Looking for clipper/clipper.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-core.so -- FFTW2 libraries - /usr/lib/libsfftw.so -- - /usr/lib/libsrfftw.so -- FFTW2 header directory - /usr/include -- Performing Test _LINKING_WITH_CLIPPER_CORE -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success -- Looking for clipper/clipper-ccp4.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so -- Looking for clipper/clipper-contrib.h - /usr/include -- Found CCP4: /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so -- CCP4 include directory: /usr/include CMake Warning (dev) at /usr/share/cmake-3.28/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (PkgConfig) does not match the name of the calling package (pdb-redo). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): /usr/share/cmake-3.28/Modules/FindPkgConfig.cmake:99 (find_package_handle_standard_args) /usr/lib/arm-linux-gnueabihf/cmake/pdb-redo/pdb-redoConfig.cmake:42 (include) CMakeLists.txt:111 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'gsl' -- Found gsl, version 2.7.1 -- Configuring done (11.1s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/density-fitness-1.0.8 -B/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/depend make[3]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' make -f CMakeFiles/mrc-depends-file_density-fitness.dir/build.make CMakeFiles/mrc-depends-file_density-fitness.dir/depend make[3]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' cd /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/density-fitness-1.0.8 /build/reproducible-path/density-fitness-1.0.8 /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/CMakeFiles/mrc-depends-file_density-fitness.dir/DependInfo.cmake "--color=" [ 25%] Generating density-fitness_rsrc.obj /usr/bin/mrc -o /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/density-fitness_rsrc.obj /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' make -f CMakeFiles/mrc-depends-file_density-fitness.dir/build.make CMakeFiles/mrc-depends-file_density-fitness.dir/build make[3]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' /usr/bin/mrc -o /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/density-fitness_rsrc.obj -d /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/density-fitness_rsrc.d /usr/share/libcifpp/mmcif_pdbx.dic /usr/share/libcifpp/mmcif_ddl.dic make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' [ 25%] Built target mrc-depends-file_density-fitness cd /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/density-fitness-1.0.8 /build/reproducible-path/density-fitness-1.0.8 /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/CMakeFiles/density-fitness.dir/DependInfo.cmake "--color=" Dependencies file "density-fitness_rsrc.d" is newer than depends file "/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/CMakeFiles/density-fitness.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target density-fitness make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' make -f CMakeFiles/density-fitness.dir/build.make CMakeFiles/density-fitness.dir/build make[3]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' [ 50%] Building CXX object CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf -I/build/reproducible-path/density-fitness-1.0.8/PRIVATE -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -MF CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o.d -o CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o -c /build/reproducible-path/density-fitness-1.0.8/src/density-fitness.cpp [ 75%] Building CXX object CMakeFiles/density-fitness.dir/src/main.cpp.o /usr/bin/c++ -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -I/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf -I/build/reproducible-path/density-fitness-1.0.8/PRIVATE -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++17 -MD -MT CMakeFiles/density-fitness.dir/src/main.cpp.o -MF CMakeFiles/density-fitness.dir/src/main.cpp.o.d -o CMakeFiles/density-fitness.dir/src/main.cpp.o -c /build/reproducible-path/density-fitness-1.0.8/src/main.cpp In file included from /usr/include/c++/13/vector:72, from /usr/include/zeep/json/factory.hpp:13, from /usr/include/zeep/json/element.hpp:14, from /build/reproducible-path/density-fitness-1.0.8/src/density-fitness.cpp:36: /usr/include/c++/13/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {zeep::json::element}; _Tp = zeep::json::element; _Alloc = std::allocator]': /usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type 'std::vector::iterator' changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {zeep::json::element}; _Tp = zeep::json::element; _Alloc = std::allocator]', inlined from 'void zeep::json::element::emplace_back(Args&& ...) [with Args = {zeep::json::element}]' at /usr/include/zeep/json/element.hpp:288:31: /usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Linking CXX executable density-fitness /usr/bin/cmake -E cmake_link_script CMakeFiles/density-fitness.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/density-fitness-1.0.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro "CMakeFiles/density-fitness.dir/src/density-fitness.cpp.o" "CMakeFiles/density-fitness.dir/src/main.cpp.o" "density-fitness_rsrc.obj" -o density-fitness /usr/lib/arm-linux-gnueabihf/libpdb-redo.so.3.0.5 /usr/lib/arm-linux-gnueabihf/libzeep.so.5.1.8 /usr/lib/arm-linux-gnueabihf/libcifpp.so.5.0.7.1 /usr/lib/arm-linux-gnueabihf/libz.so /usr/lib/arm-linux-gnueabihf/libnewuoa.so.0.1.2 /usr/lib/arm-linux-gnueabihf/libclipper-ccp4.so /usr/lib/arm-linux-gnueabihf/libclipper-contrib.so /usr/lib/arm-linux-gnueabihf/libclipper-core.so /usr/lib/arm-linux-gnueabihf/libccp4c.so /usr/lib/arm-linux-gnueabihf/libgsl.so /usr/lib/arm-linux-gnueabihf/libgslcblas.so /usr/lib/arm-linux-gnueabihf/libboost_regex.so.1.83.0 /usr/lib/arm-linux-gnueabihf/libboost_date_time.so.1.83.0 /usr/bin/ld: warning: density-fitness_rsrc.obj: missing .note.GNU-stack section implies executable stack /usr/bin/ld: NOTE: This behaviour is deprecated and will be removed in a future version of the linker make[3]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' [100%] Built target density-fitness make[2]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' dh_auto_test cd obj-arm-linux-gnueabihf && make -j3 test ARGS\+=--verbose ARGS\+=-j3 make[1]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' Running tests... /usr/bin/ctest --force-new-ctest-process --verbose -j3 UpdateCTestConfiguration from :/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/DartConfiguration.tcl Parse Config file:/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf/DartConfiguration.tcl Test project /build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end No tests were found!!! make[1]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/density-fitness/ cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/density-fitness-1.0.8/debian/density-fitness AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/density-fitness-1.0.8 -B/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/density-fitness-1.0.8/debian/density-fitness/usr/bin/density-fitness -- Installing: /build/reproducible-path/density-fitness-1.0.8/debian/density-fitness/usr/share/man/man1/density-fitness.1 make[1]: Leaving directory '/build/reproducible-path/density-fitness-1.0.8/obj-arm-linux-gnueabihf' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/density-fitness/usr/bin/density-fitness contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'density-fitness' in '../density-fitness_1.0.8-4_armhf.deb'. dpkg-deb: building package 'density-fitness-dbgsym' in '../density-fitness-dbgsym_1.0.8-4_armhf.deb'. dpkg-genbuildinfo --build=binary -O../density-fitness_1.0.8-4_armhf.buildinfo dpkg-genchanges --build=binary -O../density-fitness_1.0.8-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/16021 and its subdirectories I: Current time: Wed Apr 17 17:30:17 -12 2024 I: pbuilder-time-stamp: 1713418217 Thu Apr 18 05:30:34 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ff4a-armhf-rb.debian.net. Thu Apr 18 05:30:34 UTC 2024 I: Preparing to do remote build '2' on ff4a-armhf-rb.debian.net. Thu Apr 18 05:33:38 UTC 2024 I: Deleting $TMPDIR on ff4a-armhf-rb.debian.net. Thu Apr 18 05:33:40 UTC 2024 I: density-fitness_1.0.8-4_armhf.changes: Format: 1.8 Date: Sat, 04 Feb 2023 09:48:33 +0100 Source: density-fitness Binary: density-fitness density-fitness-dbgsym Architecture: armhf Version: 1.0.8-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Maarten L. Hekkelman Description: density-fitness - Calculates per-residue electron density scores Changes: density-fitness (1.0.8-4) unstable; urgency=medium . * Update pdb-redo dependency. Checksums-Sha1: 840c330df60a257eca58270f63d0ad567cf5af5a 1019224 density-fitness-dbgsym_1.0.8-4_armhf.deb db61a8c6903f871753c30e95577e11a3500204af 8304 density-fitness_1.0.8-4_armhf.buildinfo 2d31390df4de71aeb0f2b8c8f5623d12d1a6bb0a 454092 density-fitness_1.0.8-4_armhf.deb Checksums-Sha256: 6778d502d1268f790d5e878c5fcae65a6bdf92cdc4f0c7637625cbe52f6c0d7b 1019224 density-fitness-dbgsym_1.0.8-4_armhf.deb 47797c54648ebecd81aa5ed520e44f0e01b15806986e6716f6a94e0f7d89d15a 8304 density-fitness_1.0.8-4_armhf.buildinfo fb89530b66f5356d7b6a01d4c1e8943b285ea74c62ff421eb4e0b2e5b9852374 454092 density-fitness_1.0.8-4_armhf.deb Files: 28bfc857c5844bcd48c2509336f678fe 1019224 debug optional density-fitness-dbgsym_1.0.8-4_armhf.deb 6d970425585a6dc50ee7280cc0d33857 8304 science optional density-fitness_1.0.8-4_armhf.buildinfo 5b1d9f1027943223abf45c978b9251fc 454092 science optional density-fitness_1.0.8-4_armhf.deb Thu Apr 18 05:33:41 UTC 2024 I: diffoscope 264 will be used to compare the two builds: Running as unit: rb-diffoscope-armhf_31-2615.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.CnaRK1wJ/density-fitness_1.0.8-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.CnaRK1wJ/density-fitness_1.0.8-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.CnaRK1wJ/density-fitness_1.0.8-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.CnaRK1wJ/b1/density-fitness_1.0.8-4_armhf.changes /srv/reproducible-results/rbuild-debian/r-b-build.CnaRK1wJ/b2/density-fitness_1.0.8-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.408s) 0.408s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.033s) 0.033s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 798ms CPU time consumed: 800ms Thu Apr 18 05:33:43 UTC 2024 I: diffoscope 264 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 18 05:33:43 UTC 2024 I: density-fitness from unstable built successfully and reproducibly on armhf. Thu Apr 18 05:33:44 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Apr 18 05:33:44 UTC 2024 I: Submitting 12K b1/density-fitness_1.0.8-4_armhf.buildinfo.asc Thu Apr 18 05:33:46 UTC 2024 I: Submitting 12K b2/density-fitness_1.0.8-4_armhf.buildinfo.asc Thu Apr 18 05:33:46 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 18 05:33:46 UTC 2024 I: Done submitting .buildinfo files. Thu Apr 18 05:33:46 UTC 2024 I: Removing signed density-fitness_1.0.8-4_armhf.buildinfo.asc files: removed './b1/density-fitness_1.0.8-4_armhf.buildinfo.asc' removed './b2/density-fitness_1.0.8-4_armhf.buildinfo.asc'