Tue Nov 12 16:15:29 UTC 2024 I: starting to build abyss/unstable/armhf on jenkins on '2024-11-12 16:15' Tue Nov 12 16:15:29 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_11/6475/console.log Tue Nov 12 16:15:29 UTC 2024 I: Downloading source for unstable/abyss=2.3.10-1 --2024-11-12 16:15:29-- http://deb.debian.org/debian/pool/main/a/abyss/abyss_2.3.10-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2310 (2.3K) [text/prs.lines.tag] Saving to: ‘abyss_2.3.10-1.dsc’ 0K .. 100% 254M=0s 2024-11-12 16:15:29 (254 MB/s) - ‘abyss_2.3.10-1.dsc’ saved [2310/2310] Tue Nov 12 16:15:29 UTC 2024 I: abyss_2.3.10-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: abyss Binary: abyss Architecture: any Version: 2.3.10-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Michael R. Crusoe , Étienne Mollier Homepage: https://github.com/bcgsc/abyss Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/abyss Vcs-Git: https://salsa.debian.org/med-team/abyss.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), architecture-is-64-bit, libboost-graph-dev, libbtllib-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl , libsqlite3-dev, pkgconf, help2man, debhelper Package-List: abyss deb science optional arch=any Checksums-Sha1: 2179eef8d6120588e46efb7397cc7ba3cfca5c26 933928 abyss_2.3.10.orig.tar.xz ee4818b5a88ed0615520b35f0e31b46c11b2f425 1497940 abyss_2.3.10-1.debian.tar.xz Checksums-Sha256: c8461eb017edfbd83c2aac9910da438df2d79660d2e87ab289f2de7a0d620a4c 933928 abyss_2.3.10.orig.tar.xz e809ab4f042a43c439cf94d2650264bc7d055042e8168c093a75293aa4f33c4a 1497940 abyss_2.3.10-1.debian.tar.xz Files: b13b49e294474086d2e1395f5689843b 933928 abyss_2.3.10.orig.tar.xz 7534eff746ccb91f0acac3cb29c24422 1497940 abyss_2.3.10-1.debian.tar.xz Dgit: 17da39574845c0e2f27363979a61f3402545ddb8 debian archive/debian/2.3.10-1 https://git.dgit.debian.org/abyss -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcmKLsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoNhhAAh7JJZI6fYcVIfVxhh3a6X5otjS0L YJ5ULejgvjt5NQLF8V3+ximRf7sPM2a75tQekfrRikg1Z3AjgFxBnTsi2cUL5u4O NcjXa/qsGWjyPOnxo36Agr0wLfCnjQCp+W05gl+LLq+V/IXAHP8pS5WKVOFpNkbF u4+0Dwr8Rr4zVpJLjt1uaBL7bUJloBK9+HwIfjvicBl9YNn+klPLLToqACwY+iXe R5NhHnQra7XpbzSCoVqvTtjJxxZrAZ5P5kb8bf96mKJWObYfFA+FKzlsa2lKy2vF We936R+VSpxEzxtI5m5k5SuH3kEQ9siTh2imXY0oEupKrfxoODXtriA8fv1n5Rl8 IdyxP86ot9pApvJYem57MSoObHB28E6QRUmfoQVDcp6eXKq6QSrq+eaEYSrK//IL MCrpeVrjXcKsFYr+m7TP2mGqV3xNZCQSmwD/ByUIq+z+K8mIL/ueOPeubVjnOdgK 0sFPPpxL/Gge+M67JavzuTWBxuSxe7Gxx311OYuoVZ6ZXbjuuUyBzNYoci8/odnU 73auPStQ81HhPDhKkOjpYd2d43ciKYQKH1evEzbAzN9/AOZZMI6S1nSzk93dhOd9 6KhrtjDoy//eHedOu8fbnDU5r18vsQzOHE7qVdcjKVgLXp4zQDN50oyxnu/IjleR qUkm0T2hTjCJGyc= =6QEG -----END PGP SIGNATURE----- Tue Nov 12 16:15:29 UTC 2024 I: Checking whether the package is not for us Tue Nov 12 16:15:29 UTC 2024 I: Starting 1st build on remote node wbq0-armhf-rb.debian.net. Tue Nov 12 16:15:29 UTC 2024 I: Preparing to do remote build '1' on wbq0-armhf-rb.debian.net. Tue Nov 12 16:17:08 UTC 2024 I: Deleting $TMPDIR on wbq0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 12 04:15:40 -12 2024 I: pbuilder-time-stamp: 1731428140 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [abyss_2.3.10-1.dsc] I: copying [./abyss_2.3.10.orig.tar.xz] I: copying [./abyss_2.3.10-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 2 13:27:23 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./abyss_2.3.10-1.dsc: no acceptable signature found dpkg-source: info: extracting abyss in abyss-2.3.10 dpkg-source: info: unpacking abyss_2.3.10.orig.tar.xz dpkg-source: info: unpacking abyss_2.3.10-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying abyss-pe.patch dpkg-source: info: applying fix-privacy-breach.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/29875/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='ab4c4ee4ac7c4fbc877fc8a9e781e325' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='29875' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lGC3Zmge/pbuilderrc_jn6Q --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lGC3Zmge/b1 --logfile b1/build.log abyss_2.3.10-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux wbq0 6.1.0-27-armmp #1 SMP Debian 6.1.115-1 (2024-11-01) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/29875/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, libboost-graph-dev, libbtllib-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl, libsqlite3-dev, pkgconf, help2man, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19689 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on libboost-graph-dev; however: Package libboost-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on libbtllib-dev; however: Package libbtllib-dev is not installed. pbuilder-satisfydepends-dummy depends on libopenmpi-dev; however: Package libopenmpi-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. pbuilder-satisfydepends-dummy depends on libtext-multimarkdown-perl; however: Package libtext-multimarkdown-perl is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cpp-13{a} cpp-13-arm-linux-gnueabihf{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-13{a} gcc-13-arm-linux-gnueabihf{a} gcc-13-base{a} gettext{a} gettext-base{a} gfortran-13{a} gfortran-13-arm-linux-gnueabihf{a} groff-base{a} help2man{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-graph-dev{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libcbor0.10{a} libcom-err2{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-13-dev{a} libgfortran-13-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblocale-gettext-perl{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpkgconf3{a} librdmacm1t64{a} libsparsehash-dev{a} libsqlite3-dev{a} libtext-markdown-perl{a} libtext-multimarkdown-perl{a} libtool{a} libuchardet0{a} liburi-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libhttp-message-perl libmail-sendmail-perl lynx wget xauth 0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 86.9 MB of archives. After unpacking 435 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: architecture-is-64-bit which is a virtual package and is not provided by any available package Depends: libbtllib-dev which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cpp-13{a} cpp-13-arm-linux-gnueabihf{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-13{a} gcc-13-arm-linux-gnueabihf{a} gcc-13-base{a} gettext{a} gettext-base{a} gfortran-13{a} gfortran-13-arm-linux-gnueabihf{a} groff-base{a} help2man{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-graph-dev{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost1.83-dev{a} libcbor0.10{a} libcom-err2{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-13-dev{a} libgfortran-13-dev{a} libgfortran5{a} libgssapi-krb5-2{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblocale-gettext-perl{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3t64{a} libpciaccess0{a} libpipeline1{a} libpkgconf3{a} librdmacm1t64{a} libsparsehash-dev{a} libsqlite3-dev{a} libtext-markdown-perl{a} libtext-multimarkdown-perl{a} libtool{a} libuchardet0{a} liburi-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libhttp-message-perl libmail-sendmail-perl lynx wget xauth 0 packages upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 86.9 MB of archives. After unpacking 435 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/29875 and its subdirectories Tue Nov 12 16:17:11 UTC 2024 W: No second build log, what happened? Tue Nov 12 16:17:11 UTC 2024 W: Downloading the build dependencies failed Tue Nov 12 16:17:11 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Tue Nov 12 16:17:11 UTC 2024 W: Network problems are automatically rescheduled after some hours.