Thu Nov 7 14:23:33 UTC 2024 I: starting to build veryfasttree/unstable/arm64 on jenkins on '2024-11-07 14:23' Thu Nov 7 14:23:33 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_9/44613/console.log Thu Nov 7 14:23:33 UTC 2024 I: Downloading source for unstable/veryfasttree=4.0.4+dfsg-1 --2024-11-07 14:23:33-- http://deb.debian.org/debian/pool/main/v/veryfasttree/veryfasttree_4.0.4%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2137 (2.1K) [text/prs.lines.tag] Saving to: ‘veryfasttree_4.0.4+dfsg-1.dsc’ 0K .. 100% 265M=0s 2024-11-07 14:23:33 (265 MB/s) - ‘veryfasttree_4.0.4+dfsg-1.dsc’ saved [2137/2137] Thu Nov 7 14:23:33 UTC 2024 I: veryfasttree_4.0.4+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: veryfasttree Binary: veryfasttree Architecture: any Version: 4.0.4+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: César Pomar Homepage: https://github.com/citiususc/veryfasttree Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/veryfasttree Vcs-Git: https://salsa.debian.org/med-team/veryfasttree.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libboost-dev, libbz2-dev, robin-map-dev, libxxhash-dev, zlib1g-dev Package-List: veryfasttree deb science optional arch=any Checksums-Sha1: 7c0a092d9241ec3690eb30f8f33f0126993ca427 164136 veryfasttree_4.0.4+dfsg.orig.tar.xz d388edf111767e5747b0d456d440a091e0e8684c 29776 veryfasttree_4.0.4+dfsg-1.debian.tar.xz Checksums-Sha256: 576e5ab5ab05bf56d74082fae424d3fabf6508878c4235bf310bdce450e7d01b 164136 veryfasttree_4.0.4+dfsg.orig.tar.xz 0b981e14a99a2b69d95bc60782c07c57a5d9170e7f5c50abd165be8ce700feda 29776 veryfasttree_4.0.4+dfsg-1.debian.tar.xz Files: 6b11cb3b70851838ea4429b519eefa79 164136 veryfasttree_4.0.4+dfsg.orig.tar.xz b5852de91fff2dd31232eb369f9152d9 29776 veryfasttree_4.0.4+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcmevEUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrB8w//aHOQVM5I2ZET6HZqdfe1e+O4yQLZ 0nqUwCWc29iRT1S1r4r8tm3d/l1c9CvEYejGT2uws6tGmhk+hivyg2PuheM632Sb EyoyKCbhSGTbePzrGGI8hsNF9xLmXnkFVJg4OUQ6YESc/6PqL80fckG9I1k1Ckz1 Tg/AKEqqLCVzK24shlQXZ0Cyhdx/FLi6PKQoLaGtJhhQ4o3q8qIgOaL0PuoqiIRJ Nd6JCdkIlnuS3XcRJdEgFn20HiEdPWSFpeES5m2looOWvfFIsYwkxs20dzVl6kFD O0jfz4gi3YREHzBcbMpgasjg/IugADDexgLKfflI4EAlCj76CEGtFJswOY4MK2Tg D31rdB80ZOoqVmGZyPctgXSVW084aD0nvILjLGQpO3ltVgxwCOoQeVaIHyqctCQW xQpaJQyj/8+qdVCWwmxzqNHlUcec5QLidu1KcTZabL1USPsFcGfZzl6BUyhNH8rq oTNVl4BPsgB9hp9UxwhE+zcBLoEWqqY6lbDR6v63ym/dnM6WzzpIdIsVC8qZrXsi C51I3Srsef64ws0h/+O0YjyrLRIrzVQ5EGCy0Kuep7Y/CC68fr5v9syL6WdgaSAJ dvX6YoQrRnFNvNRNXaogApk5sJpdmF7omyRaQSCSYwTRUix9/Ti9GgYa8aENpIZD QMMKvtaeF4Re3GE= =0uoh -----END PGP SIGNATURE----- Thu Nov 7 14:23:33 UTC 2024 I: Checking whether the package is not for us Thu Nov 7 14:23:33 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Nov 7 14:23:33 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Nov 7 14:25:07 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 10 08:46:35 -12 2025 I: pbuilder-time-stamp: 1765399595 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [veryfasttree_4.0.4+dfsg-1.dsc] I: copying [./veryfasttree_4.0.4+dfsg.orig.tar.xz] I: copying [./veryfasttree_4.0.4+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Nov 2 19:18:09 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./veryfasttree_4.0.4+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting veryfasttree in veryfasttree-4.0.4+dfsg dpkg-source: info: unpacking veryfasttree_4.0.4+dfsg.orig.tar.xz dpkg-source: info: unpacking veryfasttree_4.0.4+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2196051/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='4344795a752f4b91980c5e3c9b17fa16' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2196051' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.00lWKMg4/pbuilderrc_btdo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.00lWKMg4/b1 --logfile b1/build.log veryfasttree_4.0.4+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2196051/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libbz2-dev, robin-map-dev, libxxhash-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on robin-map-dev; however: Package robin-map-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} libxxhash-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} robin-map-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 59 newly installed, 0 to remove and 0 not upgraded. Need to get 46.3 MB of archives. After unpacking 299 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-10 [96.5 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.30.5-1 [2223 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b5 [296 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.30.5-1 [9403 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 56 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libxxhash-dev arm64 0.8.2-2+b2 [81.3 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 robin-map-dev all 1.3.0-1 [29.8 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 46.3 MB in 0s (193 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20089 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-10_arm64.deb ... Unpacking bsdextrautils (2.40.2-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.30.5-1_all.deb ... Unpacking cmake-data (3.30.5-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../18-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b5_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b5) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../22-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../23-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../24-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../26-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. 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Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up cmake-data (3.30.5-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/veryfasttree-4.0.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../veryfasttree_4.0.4+dfsg-1_source.changes dpkg-buildpackage: info: source package veryfasttree dpkg-buildpackage: info: source version 4.0.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg' dh_auto_clean rm -Rf build_* make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg' dh_auto_configure -- \ -DUSE_NATIVE=OFF -DUSE_SHARED=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg' debian/rules 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-D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o 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CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o [ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp [ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD 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/build/reproducible-path/veryfasttree-4.0.4+dfsg/src/DiskMemory.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/Alignment.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/VeryFastTree.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.4+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -std=gnu++11 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.4+dfsg/main.cpp In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/14/bits/alloc_traits.h:544:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(typename _Node_alloc_traits::pointer) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:522:39, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:2023:13, inlined from 'void std::__cxx11::list<_Tp, _Alloc>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/14/bits/stl_list.h:1292:23, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/14/bits/new_allocator.h:172:33: warning: 'void operator delete(void*)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.h:845, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [2305843009213693951]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = float; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 2305843009213693951] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1670:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1671:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1699:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1715:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1732:17: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ In member function 'void veryfasttree::NeighbourJoining::Profile::setVectorSize(size_t, veryfasttree::NeighbourJoining::numeric_t, bool) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'void veryfasttree::NeighbourJoining::Profile::reset() [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:175:18, inlined from 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:26:10, inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:104:24: warning: array subscript -1 is outside array bounds of 'void [1152921504606846975]' [-Warray-bounds=] 104 | DynDiskMemory *disk = (DynDiskMemory * ) * (((uintptr_t *) codes) - 1); | ^~~~ In constructor 'veryfasttree::NeighbourJoining::Profile::Profile(int64_t, int64_t) [with Precision = double; Operations = veryfasttree::BasicOperations]', inlined from 'double veryfasttree::NeighbourJoining::MLQuartetOptimize(Profile&, Profile&, Profile&, Profile&, double*, bool*, double*) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:1748:13: /build/reproducible-path/veryfasttree-4.0.4+dfsg/src/impl/../NeighbourJoining.tcc:16:13: note: at offset -8 into object of size [0, 1152921504606846975] allocated by 'operator new []' 16 | codes = new char[nPos]; | ^~~~~~~~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -Wl,-z,relro -Wl,-z,now CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg' dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/veryfasttree-4.0.4\+dfsg/debian/veryfasttree AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.4+dfsg -B/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/veryfasttree-4.0.4+dfsg/debian/veryfasttree/usr/bin/VeryFastTree make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg/obj-aarch64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.4+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'veryfasttree' in '../veryfasttree_4.0.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'veryfasttree-dbgsym' in '../veryfasttree-dbgsym_4.0.4+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../veryfasttree_4.0.4+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../veryfasttree_4.0.4+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2196051 and its subdirectories I: Current time: Wed Dec 10 08:48:02 -12 2025 I: pbuilder-time-stamp: 1765399682 Thu Nov 7 14:25:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu Nov 7 14:25:08 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu Nov 7 14:26:57 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu Nov 7 14:26:58 UTC 2024 I: veryfasttree_4.0.4+dfsg-1_arm64.changes: Format: 1.8 Date: Sat, 02 Nov 2024 17:03:57 +0100 Source: veryfasttree Binary: veryfasttree veryfasttree-dbgsym Architecture: arm64 Version: 4.0.4+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: veryfasttree - Speeding up the estimation of phylogenetic trees from sequences Changes: veryfasttree (4.0.4+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version 4.0.4+dfsg * d/manpages: use newly introduced manual pages upstream. * d/VeryFastTree.1: delete: maintainer manual is now unneeded. * d/control: declare compliance to standards version 4.7.0. * d/copyright: update upstream copyright years. Checksums-Sha1: add36e0dc5db22ae56a93c364f86edee16d8bb84 6737672 veryfasttree-dbgsym_4.0.4+dfsg-1_arm64.deb c1368f4f2e8c4fa5f8254c00860ab10c95cea6da 6202 veryfasttree_4.0.4+dfsg-1_arm64.buildinfo fdd0888d93b9ff8c906277c84b88db4d7bb3c913 491684 veryfasttree_4.0.4+dfsg-1_arm64.deb Checksums-Sha256: 0ced90eac24ddaa60bf6cdd7b08bdad0bc4ecd20fad0604dc3dc8c4aa91624e7 6737672 veryfasttree-dbgsym_4.0.4+dfsg-1_arm64.deb 39906e79acbde279acb74d63c1241a29c587a8e5016e515f31e8bab8d127a4fd 6202 veryfasttree_4.0.4+dfsg-1_arm64.buildinfo 56dd60a22a8388c2bb92b57a7361f4395eb13a8d57978d716d048359b5e4cc52 491684 veryfasttree_4.0.4+dfsg-1_arm64.deb Files: fb13cc1f5777e770322d78e179eebb85 6737672 debug optional veryfasttree-dbgsym_4.0.4+dfsg-1_arm64.deb 89fa2ceb801b90ee0db3cf7fabb912b5 6202 science optional veryfasttree_4.0.4+dfsg-1_arm64.buildinfo c980b9ef4bc19446765765f35e4e9881 491684 science optional veryfasttree_4.0.4+dfsg-1_arm64.deb Thu Nov 7 14:27:00 UTC 2024 I: diffoscope 282 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_9-44613.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.00lWKMg4/veryfasttree_4.0.4+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.00lWKMg4/veryfasttree_4.0.4+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.00lWKMg4/veryfasttree_4.0.4+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.00lWKMg4/b1/veryfasttree_4.0.4+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.00lWKMg4/b2/veryfasttree_4.0.4+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.453s) 0.453s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.092s) 0.092s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 792ms CPU time consumed: 793ms Thu Nov 7 14:27:01 UTC 2024 I: diffoscope 282 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 7 14:27:01 UTC 2024 I: veryfasttree from unstable built successfully and reproducibly on arm64. Thu Nov 7 14:27:02 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 7 14:27:02 UTC 2024 I: Submitting 8.0K b1/veryfasttree_4.0.4+dfsg-1_arm64.buildinfo.asc Thu Nov 7 14:27:03 UTC 2024 I: Submitting 8.0K b2/veryfasttree_4.0.4+dfsg-1_arm64.buildinfo.asc Thu Nov 7 14:27:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 7 14:27:04 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 7 14:27:04 UTC 2024 I: Removing signed veryfasttree_4.0.4+dfsg-1_arm64.buildinfo.asc files: removed './b1/veryfasttree_4.0.4+dfsg-1_arm64.buildinfo.asc' removed './b2/veryfasttree_4.0.4+dfsg-1_arm64.buildinfo.asc'