Mon May 13 18:43:18 UTC 2024 I: starting to build spoa/unstable/arm64 on jenkins on '2024-05-13 18:43' Mon May 13 18:43:18 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_10/17752/console.log Mon May 13 18:43:18 UTC 2024 I: Downloading source for unstable/spoa=4.1.4-1 --2024-05-13 18:43:18-- http://deb.debian.org/debian/pool/main/s/spoa/spoa_4.1.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2127 (2.1K) [text/prs.lines.tag] Saving to: ‘spoa_4.1.4-1.dsc’ 0K .. 100% 246M=0s 2024-05-13 18:43:18 (246 MB/s) - ‘spoa_4.1.4-1.dsc’ saved [2127/2127] Mon May 13 18:43:18 UTC 2024 I: spoa_4.1.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: spoa Binary: spoa, libspoa7.0.0, libspoa-dev Architecture: any Version: 4.1.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/rvaser/spoa Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/spoa Vcs-Git: https://salsa.debian.org/med-team/spoa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev, libcpu-features-dev [any-amd64 any-i386] Package-List: libspoa-dev deb libdevel optional arch=any libspoa7.0.0 deb libs optional arch=any spoa deb science optional arch=any Checksums-Sha1: 4238e0d435b3e0df7d0b377d07f71fe463b9f836 47516 spoa_4.1.4.orig.tar.gz 00178616ffb1e46827cc3ad103b37b3449876970 8780 spoa_4.1.4-1.debian.tar.xz Checksums-Sha256: ea696650460b17881595454c2546a05905f2724927dbbf4d71f4bb8a3f6a99cd 47516 spoa_4.1.4.orig.tar.gz 9098561c5f9cfbea5e853a5e0303dcea13d9f3e65fcd8f57b26b315fef77ac1c 8780 spoa_4.1.4-1.debian.tar.xz Files: b8eb09427cc97cdf94602ad71828adbf 47516 spoa_4.1.4.orig.tar.gz 094c5857d54f0664d2d3995e2edecde6 8780 spoa_4.1.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmX8IFYACgkQPCZ2P2xn 5uJgTxAAwyLW1bp6HMFpRsdHeyoE8KlpmaD3csoaI1p62LPZG+wQSw6S3sngp+zw DsUbLg5yq+6dSWV0S6IUEnLIog7hv6vZxAnfCg1avztweSmK6vDJfsf8OnAe0Ln0 XAQktPbUxQtBVO5tKCHBlUNb0e2+82eDzG51oOcUKsNKQjTmjj5Z9mdKXf5aFPDP jZb3ATK6KbStNBPq2B/lp3XmG4L/MuPO9Q+uNuObcVZjZC/At3L9eTmvJS6dDAdb 9X/JpLq9Kk7sWaPp7dhoX9YsNd19o2SDFpGP8T/UVfaHdEzHmUp9CA3nr+J22WBK PRNQ/1jg5hw3/Ri5FmSKcqMHUok7oP9IAKI6Zrc1eF167ooQ8tXULNBo82S1KACL r+LAVblZ6WwQnE+L0lFPGuE/5Q1VOanuY+DwRbcRI6y3a3ZllRjSBuAw2yp2/jwP RZlehOnr4UUWV+XwKPaG9wjqNe4Y7J3biUuX4w6hvr50HsdjLT8pHYYxiEm/Vqr0 kRWtMDV3ofK087UjLUeIrErWqzqEml1fDgKsDTRibVOMYiV8H6x3kPpbTAOCoTn1 mKUQfpKweMQ0hExUtj48yG19X7jA0hKmrXUp3cH9Xb7n/Zzb+A+0xOoUiiQEI430 fq8LaE8o6OiFIKjNfrAPAqbNr4qRKhbWGKxXWvAiMOPJKKCpgAQ= =/kPm -----END PGP SIGNATURE----- Mon May 13 18:43:18 UTC 2024 I: Checking whether the package is not for us Mon May 13 18:43:18 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon May 13 18:43:18 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon May 13 18:45:08 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 13 06:43:21 -12 2024 I: pbuilder-time-stamp: 1715625801 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [spoa_4.1.4-1.dsc] I: copying [./spoa_4.1.4.orig.tar.gz] I: copying [./spoa_4.1.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Mar 21 11:56:06 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./spoa_4.1.4-1.dsc: no acceptable signature found dpkg-source: info: extracting spoa in spoa-4.1.4 dpkg-source: info: unpacking spoa_4.1.4.orig.tar.gz dpkg-source: info: unpacking spoa_4.1.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-ftbfs-gcc-10.patch dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1690547/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='dfdfb913e08f4fcfb5d91d5194b068a0' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1690547' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IvJc1uIF/pbuilderrc_xePl --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IvJc1uIF/b1 --logfile b1/build.log spoa_4.1.4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 13 07:43 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1690547/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev, libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp25{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 36.0 MB of archives. After unpacking 149 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40-8 [93.0 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.2-2 [321 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.20.1-6+b1 [33.0 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1~rc2-1 [22.5 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.20.1-6+b1 [80.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.20.1-6+b1 [315 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.20.1-6+b1 [124 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-6 [20.1 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-6 [55.3 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.17+dfsg-1 [173 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.61.0-1+b1 [71.0 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b2 [207 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.7.1-5 [412 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-3 [142 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.29.3-1 [2167 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.29.3-1+b2 [9058 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 d-shlibs all 0.106 [10.9 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 50 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 googletest all 1.14.0-1 [512 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 60 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.2 [97.8 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libgtest-dev arm64 1.14.0-1+b1 [241 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libsimde-dev all 0.8.2-1 [465 kB] Fetched 36.0 MB in 0s (120 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.21-14+b1_arm64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-4_arm64.deb ... Unpacking groff-base (1.23.0-4) ... 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Setting up debhelper (13.15.3) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.1.4-1_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.1.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/aarch64-linux-gnu/cmake/CpuFeatures cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/aarch64-linux-gnu/cmake/CpuFeatures .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY spoa_build_executable -- Build files have been written to: /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_auto_build -O--no-parallel cd obj-aarch64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 7%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong 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CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/simd_alignment_engine_dispatcher.cpp [ 28%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 35%] Building CXX object CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/spoa.dir/src/version.cpp.o -MF CMakeFiles/spoa.dir/src/version.cpp.o.d -o CMakeFiles/spoa.dir/src/version.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/version.cpp [ 42%] Linking CXX shared library lib/libspoa.so /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o CMakeFiles/spoa.dir/src/version.cpp.o /usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 42%] Built target spoa make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa_static.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 50%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/alignment_engine.cpp [ 57%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/graph.cpp [ 64%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/sisd_alignment_engine.cpp [ 71%] Linking CXX static library lib/libspoa_static.a /usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o /usr/bin/ranlib lib/libspoa_static.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 71%] Built target spoa_static make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 78%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /build/reproducible-path/spoa-4.1.4/src/main.cpp [ 85%] Linking CXX executable bin/spoa /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/lib: lib/libspoa.so.7.0.0 -lz make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 85%] Built target spoa_exe make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' cd /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4 /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles/spoa_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build make[3]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [ 92%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o /usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu -I/build/reproducible-path/spoa-4.1.4/include -I/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/_deps/simde-src -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /build/reproducible-path/spoa-4.1.4/test/spoa_test.cpp [100%] Linking CXX executable bin/spoa_test /usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/spoa-4.1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/lib lib/libspoa.so.7.0.0 -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' [100%] Built target spoa_test make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' `find . -name spoa_test` Running main() from ./googletest/src/gtest_main.cc [==========] Running 22 tests from 2 test suites. [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError [ OK ] SpoaAlignmentTest.TypeError (0 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) [----------] 3 tests from SpoaAlignmentTest (0 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear [ OK ] SpoaTest.Clear (234 ms) [ RUN ] SpoaTest.Local [ OK ] SpoaTest.Local (124 ms) [ RUN ] SpoaTest.LocalAffine [ OK ] SpoaTest.LocalAffine (154 ms) [ RUN ] SpoaTest.LocalConvex [ OK ] SpoaTest.LocalConvex (199 ms) [ RUN ] SpoaTest.LocalWithQualities [ OK ] SpoaTest.LocalWithQualities (120 ms) [ RUN ] SpoaTest.LocalAffineWithQualities [ OK ] SpoaTest.LocalAffineWithQualities (158 ms) [ RUN ] SpoaTest.LocalConvexWithQualities [ OK ] SpoaTest.LocalConvexWithQualities (197 ms) [ RUN ] SpoaTest.Global [ OK ] SpoaTest.Global (116 ms) [ RUN ] SpoaTest.GlobalAffine [ OK ] SpoaTest.GlobalAffine (158 ms) [ RUN ] SpoaTest.GlobalConvex [ OK ] SpoaTest.GlobalConvex (194 ms) [ RUN ] SpoaTest.GlobalWithQualities [ OK ] SpoaTest.GlobalWithQualities (115 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities [ OK ] SpoaTest.GlobalAffineWithQualities (158 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities [ OK ] SpoaTest.GlobalConvexWithQualities (193 ms) [ RUN ] SpoaTest.SemiGlobal [ OK ] SpoaTest.SemiGlobal (118 ms) [ RUN ] SpoaTest.SemiGlobalAffine [ OK ] SpoaTest.SemiGlobalAffine (162 ms) [ RUN ] SpoaTest.SemiGlobalConvex [ OK ] SpoaTest.SemiGlobalConvex (197 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities [ OK ] SpoaTest.SemiGlobalWithQualities (118 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities [ OK ] SpoaTest.SemiGlobalAffineWithQualities (157 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities [ OK ] SpoaTest.SemiGlobalConvexWithQualities (188 ms) [----------] 19 tests from SpoaTest (3127 ms total) [----------] Global test environment tear-down [==========] 22 tests from 2 test suites ran. (3134 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel cd obj-aarch64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/spoa-4.1.4/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/spoa-4.1.4 -B/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so.7.0.0 -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa_static.a -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaTargets.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaTargets-release.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaConfig.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/cmake/spoa/spoaConfigVersion.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa -- Set non-toolchain portion of runtime path of "/build/reproducible-path/spoa-4.1.4/debian/tmp/usr/bin/spoa" to "" make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/spoa-4.1.4' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --exclude-a \ --movedev debian/tmp/usr/include/spoa usr/include \ --movedev debian/tmp/usr/lib/aarch64-linux-gnu/cmake /usr/lib/aarch64-linux-gnu \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libspoa-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libspoa7.0.0/usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so debian/libspoa-dev/usr/lib/aarch64-linux-gnu mv /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/aarch64-linux-gnu/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/aarch64-linux-gnu PKGDEV=libspoa-dev PKGSHL=libspoa7.0.0 install -d -m 755 debian/libspoa-dev/usr/include mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include install -d -m 755 debian/libspoa-dev//usr/lib/aarch64-linux-gnu mv debian/tmp/usr/lib/aarch64-linux-gnu/cmake debian/libspoa-dev//usr/lib/aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/spoa-4.1.4' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installexamples -O--no-parallel dh_installman -O--no-parallel dh_installsystemduser -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_dwz -a -O--no-parallel dh_strip -a -O--no-parallel dh_makeshlibs -a -O--no-parallel dh_shlibdeps -a -O--no-parallel dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-1_arm64.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-1_arm64.deb'. dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-1_arm64.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-1_arm64.deb'. dpkg-deb: building package 'spoa' in '../spoa_4.1.4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../spoa_4.1.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1690547 and its subdirectories I: Current time: Mon May 13 06:45:07 -12 2024 I: pbuilder-time-stamp: 1715625907 Mon May 13 18:45:09 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Mon May 13 18:45:09 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Mon May 13 18:46:48 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Mon May 13 18:46:49 UTC 2024 I: spoa_4.1.4-1_arm64.changes: Format: 1.8 Date: Thu, 21 Mar 2024 12:34:13 +0100 Source: spoa Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym Architecture: arm64 Version: 4.1.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: libspoa-dev - SIMD partial order alignment library (development files) libspoa7.0.0 - SIMD partial order alignment library spoa - SIMD partial order alignment tool Closes: 1015667 Changes: spoa (4.1.4-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Refresh patches. * d/rules: set optimize=-lto. Closes: #1015667 * d/libspoa7.0.0.symbols.amd64: add new symbols. * d/source/lintian-overrides: removed, no longer needed. Checksums-Sha1: e13b2f87d9d7e7739fbf9cd31c939a3a3ba6069a 9396 libspoa-dev_4.1.4-1_arm64.deb 728bd6020c639592f1de416bd50a2fb4f7738dba 647736 libspoa7.0.0-dbgsym_4.1.4-1_arm64.deb 7d00cbfb4741477b58e0dfddf55e685b1db67726 50004 libspoa7.0.0_4.1.4-1_arm64.deb 348be10b519186f03c1e262d8b9647054aa72ab5 242864 spoa-dbgsym_4.1.4-1_arm64.deb 2af7d38e8207c91ff4ba4691ea30e67a21d24573 7336 spoa_4.1.4-1_arm64.buildinfo fa87624f8eb68d46e339e583556ee3676929aa61 36932 spoa_4.1.4-1_arm64.deb Checksums-Sha256: 02839808e4d8a53df2f7fae72d65c3bb067b7785849cccb55fd8c46cbe1b8fea 9396 libspoa-dev_4.1.4-1_arm64.deb db38fa3b67aede3818c0ef8c1bc87f3aa6e6f37d955b9455907526a42bdfba2c 647736 libspoa7.0.0-dbgsym_4.1.4-1_arm64.deb 18d55a3f1e1b401186905d663922070e5cbf6c3361bc574630c2e6dd85193f38 50004 libspoa7.0.0_4.1.4-1_arm64.deb 4fa96f0388cc161b203ad7201f8606ee6f154c6302f63d3ed34a0543ef3fc76a 242864 spoa-dbgsym_4.1.4-1_arm64.deb 2407f5b986b725ac60466d92fe3f0a16e4a2b7bd2d5bd264203d6963548a5fab 7336 spoa_4.1.4-1_arm64.buildinfo 4a5c9c36889eb9bd140b83e0e0bacedf5e16a49f3992fbb9470cc70b54dc23d0 36932 spoa_4.1.4-1_arm64.deb Files: e9d3aefbab2b0f2e7e8149a8769d5f05 9396 libdevel optional libspoa-dev_4.1.4-1_arm64.deb 4f4fa1d552b9517ea4380d07d3635657 647736 debug optional libspoa7.0.0-dbgsym_4.1.4-1_arm64.deb ebb1a0ca2e12660eba1da5b88617d4eb 50004 libs optional libspoa7.0.0_4.1.4-1_arm64.deb 8d6c6bd4473e2092e63720824e1ba41d 242864 debug optional spoa-dbgsym_4.1.4-1_arm64.deb 7f49f492997e95f463dbe18e385105f6 7336 science optional spoa_4.1.4-1_arm64.buildinfo c55c0624ba068683539fe1dd2f896cd9 36932 science optional spoa_4.1.4-1_arm64.deb Mon May 13 18:46:50 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_10-17752.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IvJc1uIF/spoa_4.1.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IvJc1uIF/spoa_4.1.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IvJc1uIF/spoa_4.1.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IvJc1uIF/b1/spoa_4.1.4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IvJc1uIF/b2/spoa_4.1.4-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.393s) 0.393s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 777ms CPU time consumed: 772ms Mon May 13 18:46:51 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Mon May 13 18:46:51 UTC 2024 I: spoa from unstable built successfully and reproducibly on arm64. Mon May 13 18:46:52 UTC 2024 I: Submitting .buildinfo files to external archives: Mon May 13 18:46:52 UTC 2024 I: Submitting 12K b1/spoa_4.1.4-1_arm64.buildinfo.asc Mon May 13 18:46:53 UTC 2024 I: Submitting 12K b2/spoa_4.1.4-1_arm64.buildinfo.asc Mon May 13 18:46:55 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 13 18:46:55 UTC 2024 I: Done submitting .buildinfo files. Mon May 13 18:46:55 UTC 2024 I: Removing signed spoa_4.1.4-1_arm64.buildinfo.asc files: removed './b1/spoa_4.1.4-1_arm64.buildinfo.asc' removed './b2/spoa_4.1.4-1_arm64.buildinfo.asc'