Mon Nov 10 18:35:21 UTC 2025 I: starting to build r-bioc-rhdf5filters/unstable/arm64 on jenkins on '2025-11-10 18:35' Mon Nov 10 18:35:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/129778/console.log Mon Nov 10 18:35:21 UTC 2025 I: Downloading source for unstable/r-bioc-rhdf5filters=1.18.1+dfsg-1 --2025-11-10 18:35:21-- http://deb.debian.org/debian/pool/main/r/r-bioc-rhdf5filters/r-bioc-rhdf5filters_1.18.1%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2319 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-rhdf5filters_1.18.1+dfsg-1.dsc’ 0K .. 100% 276M=0s 2025-11-10 18:35:21 (276 MB/s) - ‘r-bioc-rhdf5filters_1.18.1+dfsg-1.dsc’ saved [2319/2319] Mon Nov 10 18:35:21 UTC 2025 I: r-bioc-rhdf5filters_1.18.1+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-rhdf5filters Binary: r-bioc-rhdf5filters Architecture: any Version: 1.18.1+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Dylan Aïssi Homepage: https://bioconductor.org/packages/rhdf5filters/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-rhdf5filters.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, architecture-is-64-bit, r-bioc-rhdf5lib (>= 1.26.0), libbz2-dev, libblosc-dev, libhdf5-dev, libzstd-dev, libsnappy-dev, libvbz-hdf-plugin-dev [!s390x !hppa !m68k !powerpc !ppc64 !sparc64] Package-List: r-bioc-rhdf5filters deb gnu-r optional arch=any Checksums-Sha1: 415cb2530a25bbe305f93639456d9c068a505684 183076 r-bioc-rhdf5filters_1.18.1+dfsg.orig.tar.xz 8415ec95c4bf3bb72b3dce97ffaf0ae6448df6d3 6208 r-bioc-rhdf5filters_1.18.1+dfsg-1.debian.tar.xz Checksums-Sha256: 9cd23e472749fb4f7e646fdc8040cf15ccd32823e35f6a8fe4d3e4dff8036f7a 183076 r-bioc-rhdf5filters_1.18.1+dfsg.orig.tar.xz 3c973e78b13604a0bc48e74551dc806d3b6baf45dd476aab4d898735e03c4438 6208 r-bioc-rhdf5filters_1.18.1+dfsg-1.debian.tar.xz Files: 2a4c50872f56db33280ecd310134431c 183076 r-bioc-rhdf5filters_1.18.1+dfsg.orig.tar.xz ab0957c2a8bbbbecddfe9f181c7726dc 6208 r-bioc-rhdf5filters_1.18.1+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmfYFJoACgkQPCZ2P2xn 5uIvlg//f7K7gH66Vd2xHgsdBKQ6tv82kv1YpPb/ayUMApnUnS/uEf0UP98J6wqT hsR7CgVmaP/MN6NCHhMFfcYStJP9FcBhU3COhZUEYBtSezvtOngzdNRL+l1t1CHp X31hYx6SERHCqxbSN9PhARRTPFBijAEmg8JkzS5ocZZ7dd8642KXxEVE83xNI7Ly SA6ZLXePfreAmVgbeV1ndzoLzQoo9C/Dl0O12x3DrNGglV+cG5psQfBodccyhDuJ OskTE6q5HvXVXA8/hNdRXt06g1HOjcIeb0gS70wNlgiFVcegP4vuqJ8QWGe4aj0z eiiOq/aUqmf0yllYE/2eVFvf4qEvcL+e7Tqeit4Ka6c9m+8O8nNrxmZ/7uV8iPpA +CnK160DMOIRJBFAvRxv5/u4x+9SDKreU4al3noySuUiQANqHKp2YFjr9Z3HTEFt wA5BuDcNtZEXE6LAfF6p1ZUmcjjfqcTf6+iHln7TR0MygxoITQHpbVqCGTASrMhi J+Gynpn9LAYVYLx90F2hYSxrdBIi1Z+ZMmlC/RP9Zum58El6iNIoD1jvx8I7LRsj P11O7Fitdf6+Rbn0ADFfqojt2Uk0etpfLLwFZxGuEv74WD7NJKU1q2aRgup2EHgQ Ikrgw1GkwVs2kAHYQLDWKyewcZl+ZYxHRvX92XXhnOiKo9PKrW4= =YDrW -----END PGP SIGNATURE----- Mon Nov 10 18:35:21 UTC 2025 I: Checking whether the package is not for us Mon Nov 10 18:35:21 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Nov 10 18:35:21 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Nov 10 18:36:37 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 10 06:35:23 -12 2025 I: pbuilder-time-stamp: 1762799723 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-rhdf5filters_1.18.1+dfsg-1.dsc] I: copying [./r-bioc-rhdf5filters_1.18.1+dfsg.orig.tar.xz] I: copying [./r-bioc-rhdf5filters_1.18.1+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./r-bioc-rhdf5filters_1.18.1+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-rhdf5filters in r-bioc-rhdf5filters-1.18.1+dfsg dpkg-source: info: unpacking r-bioc-rhdf5filters_1.18.1+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-rhdf5filters_1.18.1+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2221248/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6f3c4cc39bbb4bb5a7584bfe2cff8e7c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2221248' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QRVqC7Y6/pbuilderrc_W5up --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QRVqC7Y6/b1 --logfile b1/build.log r-bioc-rhdf5filters_1.18.1+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2221248/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, architecture-is-64-bit, r-bioc-rhdf5lib (>= 1.26.0), libbz2-dev, libblosc-dev, libhdf5-dev, libzstd-dev, libsnappy-dev, libvbz-hdf-plugin-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rhdf5lib (>= 1.26.0); however: Package r-bioc-rhdf5lib is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libblosc-dev; however: Package libblosc-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on libsnappy-dev; however: Package libsnappy-dev is not installed. pbuilder-satisfydepends-dummy depends on libvbz-hdf-plugin-dev; however: Package libvbz-hdf-plugin-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc-dev{a} libblosc1{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-15-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-dev{a} libldap2{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libngtcp2-crypto-ossl-dev{a} libngtcp2-crypto-ossl0{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper2{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy-dev{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtcl8.6{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} libunistring5{a} liburi-perl{a} libvariable-magic-perl{a} libvbz-hdf-plugin-dev{a} libvbz-hdf-plugin0t64{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-rhdf5lib{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 246 newly installed, 0 to remove and 0 not upgraded. Need to get 121 MB of archives. After unpacking 411 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.5.4-1 [1457 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20250419 [162 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get: 19 http://deb.debian.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 20 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 zip arm64 3.0-15 [227 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libpaper2 arm64 2.2.5-0.3+b2 [16.6 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libpaper-utils arm64 2.2.5-0.3+b2 [16.4 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 xdg-utils all 1.2.1-2 [75.8 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.46.4-1 [174 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 73 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.17.0-1 [369 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.86.1-2 [1437 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 15.2.0-7 [371 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2.4 [463 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-3 [26.5 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-11 [70.8 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 12.1.0-1 [486 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libdatrie1 arm64 0.2.13-4 [37.4 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libpango-1.0-0 arm64 1.56.3-2 [222 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libpangoft2-1.0-0 arm64 1.56.3-2 [56.5 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libpangocairo-1.0-0 arm64 1.56.3-2 [35.3 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.1-1 [334 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get: 113 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.6+ds-1 [79.1 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+26 [217 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 117 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 r-base-core arm64 4.5.2-1 [28.4 MB] Get: 122 http://deb.debian.org/debian unstable/main arm64 libgfortran-15-dev arm64 15.2.0-7 [411 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 gfortran-15-aarch64-linux-gnu arm64 15.2.0-7 [10.8 MB] Get: 124 http://deb.debian.org/debian unstable/main arm64 gfortran-15 arm64 15.2.0-7 [18.0 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 gfortran-aarch64-linux-gnu arm64 4:15.2.0-4 [1280 B] Get: 126 http://deb.debian.org/debian unstable/main arm64 gfortran arm64 4:15.2.0-4 [1428 B] Get: 127 http://deb.debian.org/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 liblapack-dev arm64 3.12.1-7 [3829 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 libncurses6 arm64 6.5+20250216-2 [96.1 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 libncurses-dev arm64 6.5+20250216-2 [340 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 libreadline-dev arm64 8.3-3 [163 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB] Get: 134 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get: 135 http://deb.debian.org/debian unstable/main arm64 libpcre2-32-0 arm64 10.46-1 [238 kB] Get: 136 http://deb.debian.org/debian unstable/main arm64 libpcre2-posix3 arm64 10.46-1 [64.1 kB] Get: 137 http://deb.debian.org/debian unstable/main arm64 libpcre2-dev arm64 10.46-1 [750 kB] Get: 138 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 139 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.50-1 [361 kB] Get: 140 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 141 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 142 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB] Get: 143 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB] Get: 144 http://deb.debian.org/debian unstable/main arm64 libxmuu1 arm64 2:1.1.3-3+b4 [22.0 kB] Get: 145 http://deb.debian.org/debian unstable/main arm64 xauth arm64 1:1.1.2-1.1 [35.4 kB] Get: 146 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 147 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 148 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 149 http://deb.debian.org/debian unstable/main arm64 libtirpc-dev arm64 1.3.6+ds-1 [192 kB] Get: 150 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 151 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 152 http://deb.debian.org/debian unstable/main arm64 r-base-dev all 4.5.2-1 [2040 B] Get: 153 http://deb.debian.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 154 http://deb.debian.org/debian unstable/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 155 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 156 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 157 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 158 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 159 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 160 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 161 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.34-2 [111 kB] Get: 162 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.01-1 [80.0 kB] Get: 163 http://deb.debian.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 164 http://deb.debian.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 165 http://deb.debian.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 166 http://deb.debian.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 167 http://deb.debian.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.004-2 [12.2 kB] Get: 168 http://deb.debian.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.009-2 [15.7 kB] Get: 169 http://deb.debian.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 170 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-perl all 0.018-1 [17.8 kB] Get: 171 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 172 http://deb.debian.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 173 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 174 http://deb.debian.org/debian unstable/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 175 http://deb.debian.org/debian unstable/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 176 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 177 http://deb.debian.org/debian unstable/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 178 http://deb.debian.org/debian unstable/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 179 http://deb.debian.org/debian unstable/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 180 http://deb.debian.org/debian unstable/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 181 http://deb.debian.org/debian unstable/main arm64 libdevel-overloadinfo-perl all 0.008-1 [7748 B] Get: 182 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 183 http://deb.debian.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 184 http://deb.debian.org/debian unstable/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 185 http://deb.debian.org/debian unstable/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 186 http://deb.debian.org/debian unstable/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 187 http://deb.debian.org/debian unstable/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 188 http://deb.debian.org/debian unstable/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 189 http://deb.debian.org/debian unstable/main arm64 libmoose-perl arm64 2.4000-1 [766 kB] Get: 190 http://deb.debian.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 191 http://deb.debian.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB] Get: 192 http://deb.debian.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 193 http://deb.debian.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get: 194 http://deb.debian.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 195 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 196 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.17.0-1 [363 kB] Get: 197 http://deb.debian.org/debian unstable/main arm64 libwww-curl-perl arm64 4.17-12 [57.7 kB] Get: 198 http://deb.debian.org/debian unstable/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 199 http://deb.debian.org/debian unstable/main arm64 dh-r all 20250812 [42.6 kB] Get: 200 http://deb.debian.org/debian unstable/main arm64 hdf5-helpers arm64 1.14.5+repack-4 [26.7 kB] Get: 201 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 202 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 203 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 204 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 205 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 206 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get: 207 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get: 208 http://deb.debian.org/debian unstable/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get: 209 http://deb.debian.org/debian unstable/main arm64 libsnappy1v5 arm64 1.2.2-2 [28.4 kB] Get: 210 http://deb.debian.org/debian unstable/main arm64 libblosc1 arm64 1.21.5+ds-2 [39.0 kB] Get: 211 http://deb.debian.org/debian unstable/main arm64 libblosc-dev arm64 1.21.5+ds-2 [50.3 kB] Get: 212 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 213 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 214 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 215 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 216 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 217 http://deb.debian.org/debian unstable/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 218 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl-dev arm64 1.16.0-1 [27.6 kB] Get: 219 http://deb.debian.org/debian unstable/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 220 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 221 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 222 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 223 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 224 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.24.1-2 [560 kB] Get: 225 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.10-3 [456 kB] Get: 226 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3 [455 kB] Get: 227 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 228 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 229 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 230 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.10-3 [1414 kB] Get: 231 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 232 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 233 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 234 http://deb.debian.org/debian unstable/main arm64 libcurl4-openssl-dev arm64 8.17.0-1 [506 kB] Get: 235 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-4 [1177 kB] Get: 236 http://deb.debian.org/debian unstable/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-4 [129 kB] Get: 237 http://deb.debian.org/debian unstable/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-4 [114 kB] Get: 238 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-4 [68.4 kB] Get: 239 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-4 [44.5 kB] Get: 240 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-4 [24.9 kB] Get: 241 http://deb.debian.org/debian unstable/main arm64 libhdf5-dev arm64 1.14.5+repack-4 [3219 kB] Get: 242 http://deb.debian.org/debian unstable/main arm64 libsnappy-dev arm64 1.2.2-2 [43.7 kB] Get: 243 http://deb.debian.org/debian unstable/main arm64 libvbz-hdf-plugin0t64 arm64 1.0.2-3.1 [16.7 kB] Get: 244 http://deb.debian.org/debian unstable/main arm64 libvbz-hdf-plugin-dev arm64 1.0.2-3.1 [14.9 kB] Get: 245 http://deb.debian.org/debian unstable/main arm64 r-bioc-biocgenerics all 0.52.0-2 [627 kB] Get: 246 http://deb.debian.org/debian unstable/main arm64 r-bioc-rhdf5lib arm64 1.28.0+dfsg-3 [104 kB] Fetched 121 MB in 1s (112 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19968 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package tzdata. Preparing to unpack .../001-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libproc2-0:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../105-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../106-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../113-libxft2_2.3.6-1+b4_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b4) ... Selecting previously unselected package x11-common. Preparing to unpack .../114-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../115-libxss1_1%3a1.2.3-1+b3_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b3) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../116-libtk8.6_8.6.17-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.17-1) ... Selecting previously unselected package libice6:arm64. 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Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../200-libgssrpc4t64_1.21.3-5_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../201-libkadm5clnt-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../202-libkdb5-10t64_1.21.3-5_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../203-libkadm5srv-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../204-krb5-multidev_1.21.3-5_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-5) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../205-libaec0_1.1.4-2_arm64.deb ... Unpacking libaec0:arm64 (1.1.4-2) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../206-libsz2_1.1.4-2_arm64.deb ... Unpacking libsz2:arm64 (1.1.4-2) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../207-libaec-dev_1.1.4-2_arm64.deb ... Unpacking libaec-dev:arm64 (1.1.4-2) ... Selecting previously unselected package libsnappy1v5:arm64. Preparing to unpack .../208-libsnappy1v5_1.2.2-2_arm64.deb ... Unpacking libsnappy1v5:arm64 (1.2.2-2) ... Selecting previously unselected package libblosc1:arm64. Preparing to unpack .../209-libblosc1_1.21.5+ds-2_arm64.deb ... Unpacking libblosc1:arm64 (1.21.5+ds-2) ... Selecting previously unselected package libblosc-dev:arm64. Preparing to unpack .../210-libblosc-dev_1.21.5+ds-2_arm64.deb ... Unpacking libblosc-dev:arm64 (1.21.5+ds-2) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../211-libbrotli-dev_1.1.0-2+b7_arm64.deb ... 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Preparing to unpack .../243-libvbz-hdf-plugin-dev_1.0.2-3.1_arm64.deb ... Unpacking libvbz-hdf-plugin-dev:arm64 (1.0.2-3.1) ... Selecting previously unselected package r-bioc-biocgenerics. Preparing to unpack .../244-r-bioc-biocgenerics_0.52.0-2_all.deb ... Unpacking r-bioc-biocgenerics (0.52.0-2) ... Selecting previously unselected package r-bioc-rhdf5lib. Preparing to unpack .../245-r-bioc-rhdf5lib_1.28.0+dfsg-3_arm64.deb ... Unpacking r-bioc-rhdf5lib (1.28.0+dfsg-3) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-11) ... Setting up libpixman-1-0:arm64 (0.46.4-1) ... Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libzstd-dev:arm64 (1.5.7+dfsg-2) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.2-4) ... Setting up hdf5-helpers (1.14.5+repack-4) ... Setting up libdynaloader-functions-perl (0.004-2) ... Setting up libdatrie1:arm64 (0.2.13-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up architecture-properties:arm64 (0.2.6) ... Setting up libxml2-16:arm64 (2.15.1+dfsg-0.3) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up unzip (6.0-29) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up x11-common (1:7.7+26) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:arm64 (10.46-1) ... Setting up libaec0:arm64 (1.1.4-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.194-1) ... Setting up libsnappy1v5:arm64 (1.2.2-2) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 10 18:36:02 UTC 2025. Universal Time is now: Mon Nov 10 18:36:02 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libvbz-hdf-plugin0t64:arm64 (1.0.2-3.1) ... Setting up zip (3.0-15) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20240727.1) ... Setting up libpcre2-32-0:arm64 (10.46-1) ... Setting up libblas3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunbound8:arm64 (1.24.1-2) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-4) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-4) ... Setting up libncurses6:arm64 (6.5+20250216-2) ... Setting up libfribidi0:arm64 (1.0.16-3) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:arm64 (3.5.4-1) ... Setting up libpng16-16t64:arm64 (1.6.50-1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up libgfortran5:arm64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.5.0-0.1) ... Setting up libnghttp3-dev:arm64 (1.12.0-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.8.1-2) ... Setting up libsub-name-perl:arm64 (0.28-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up libpcre2-posix3:arm64 (10.46-1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:arm64 (4.7.1-1) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libblosc1:arm64 (1.21.5+ds-2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libicu76:arm64 (76.1-4) ... Setting up libpaper2:arm64 (2.2.5-0.3+b2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... Setting up openssl (3.5.4-1) ... Setting up libdeflate-dev:arm64 (1.23-2) ... Setting up readline-common (8.3-3) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up liburi-perl (5.34-2) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b4) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ... Setting up libblas-dev:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.1.4-2) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5+20250216-2) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up libpcre2-dev:arm64 (10.46-1) ... Setting up libvbz-hdf-plugin-dev:arm64 (1.0.2-3.1) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libxrender1:arm64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up libblosc-dev:arm64 (1.21.5+ds-2) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libsnappy-dev:arm64 (1.2.2-2) ... Setting up libpng-dev:arm64 (1.6.50-1) ... Setting up libaec-dev:arm64 (1.1.4-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-4) ... Setting up libxext6:arm64 (2:1.3.4-1+b3) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libngtcp2-dev:arm64 (1.16.0-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-2) ... Setting up libgfortran-15-dev:arm64 (15.2.0-7) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libglib2.0-0t64:arm64 (2.86.1-2) ... No schema files found: doing nothing. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up gfortran-15-aarch64-linux-gnu (15.2.0-7) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up liblapack-dev:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up icu-devtools (76.1-4) ... Setting up ucf (3.0052) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libngtcp2-crypto-ossl-dev:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up xauth (1:1.1.2-1.1) ... Setting up groff-base (1.23.0-9) ... Setting up libharfbuzz0b:arm64 (12.1.0-1) ... Setting up gfortran-aarch64-linux-gnu (4:15.2.0-4) ... Setting up libxss1:arm64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:arm64 (2.15.0-2.4) ... Setting up libmro-compat-perl (0.15-2) ... Setting up libsm6:arm64 (2:1.2.6-1) ... Setting up libicu-dev:arm64 (76.1-4) ... Setting up libp11-kit-dev:arm64 (0.25.9-2) ... Setting up gfortran-15 (15.2.0-7) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.01-1) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-3) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up libtirpc3t64:arm64 (1.3.6+ds-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.17-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.56.3-2) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libreadline-dev:arm64 (8.3-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.4-1+b1) ... Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libtirpc-dev:arm64 (1.3.6+ds-1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-3) ... Setting up libmodule-runtime-perl (0.018-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libxt6t64:arm64 (1:1.2.1-1.3) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.56.3-2) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libpangocairo-1.0-0:arm64 (1.56.3-2) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up libgnutls28-dev:arm64 (3.8.10-3) ... Setting up libcurl4t64:arm64 (8.17.0-1) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libcurl3t64-gnutls:arm64 (8.17.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-12) ... Setting up debhelper (13.28) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up libhdf5-310:arm64 (1.14.5+repack-4) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libdevel-overloadinfo-perl (0.008-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-4) ... Setting up libb-hooks-endofscope-perl (0.28-2) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-4) ... Setting up r-bioc-biocgenerics (0.52.0-2) ... Setting up r-base-dev (4.5.2-1) ... Setting up libmoose-perl:arm64 (2.4000-1) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-openssl-dev:arm64 (8.17.0-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-4) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-4) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up libhdf5-dev (1.14.5+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up dh-r (20250812) ... Setting up r-bioc-rhdf5lib (1.28.0+dfsg-3) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-rhdf5filters_1.18.1+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-rhdf5filters dpkg-buildpackage: info: source version 1.18.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg' rm -rf src/vbz find . -name "*.o" -delete find . -name "*.so" -delete find . -name "*.a" -delete dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/r-bioc-rhdf5filters.substvars debian/files rm -fr -- debian/r-bioc-rhdf5filters/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg' debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R rm -fr -- /tmp/dh-xdg-rundir-ESx0B1fh create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R rm -f -- debian/r-bioc-rhdf5filters.substvars rm -fr -- debian/.debhelper/generated/r-bioc-rhdf5filters/ debian/r-bioc-rhdf5filters/ debian/tmp/ dh_auto_install --destdir=debian/r-bioc-rhdf5filters/ -O--buildsystem=R install -m0755 -d /build/reproducible-path/r-bioc-rhdf5filters-1.18.1\+dfsg/debian/r-bioc-rhdf5filters I: R Package: rhdf5filters Version: 1.18.1 I: Building using R version 4.5.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Mon, 17 Mar 2025 13:11:57 +0100 mkdir -p /build/reproducible-path/r-bioc-rhdf5filters-1.18.1\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library I: Using extra install flags: --configure-args="ax_cv_gcc_check_x86_cpu_init=yes ax_cv_gcc_x86_cpu_supports_sse2=no" R CMD INSTALL -l /build/reproducible-path/r-bioc-rhdf5filters-1.18.1\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library --clean --configure-args="\"ax_cv_gcc_check_x86_cpu_init=yes ax_cv_gcc_x86_cpu_supports_sse2=no\"" . --built-timestamp="'Mon, 17 Mar 2025 13:11:57 +0100'" * installing *source* package 'rhdf5filters' ... ** this is package 'rhdf5filters' version '1.18.1' files 'cleanup', 'cleanup.win', 'configure.win', 'inst/doc/rhdf5filters.html', 'src/LICENSES/BITSHUFFLE.txt', 'src/LICENSES/BLOSC.txt', 'src/LICENSES/BZIP2.txt', 'src/LICENSES/FASTLZ.txt', 'src/LICENSES/LZ4.txt', 'src/LICENSES/LZF.txt', 'src/LICENSES/SNAPPY.txt', 'src/LICENSES/STDINT.txt', 'src/LICENSES/VBZ.txt', 'src/blosc/Makefile', 'src/blosc/lib/blosc-1.20.1/Makefile.in', 'src/blosc/lib/blosc-1.20.1/bitshuffle-avx2.c', 'src/blosc/lib/blosc-1.20.1/bitshuffle-avx2.h', 'src/blosc/lib/blosc-1.20.1/bitshuffle-generic.c', 'src/blosc/lib/blosc-1.20.1/bitshuffle-generic.h', 'src/blosc/lib/blosc-1.20.1/bitshuffle-sse2.c', 'src/blosc/lib/blosc-1.20.1/bitshuffle-sse2.h', 'src/blosc/lib/blosc-1.20.1/blosc-common.h', 'src/blosc/lib/blosc-1.20.1/blosc-comp-features.h', 'src/blosc/lib/blosc-1.20.1/blosc-export.h', 'src/blosc/lib/blosc-1.20.1/blosc.c', 'src/blosc/lib/blosc-1.20.1/blosc.h', 'src/blosc/lib/blosc-1.20.1/blosclz.c', 'src/blosc/lib/blosc-1.20.1/blosclz.h', 'src/blosc/lib/blosc-1.20.1/blosclz_impl.inc', 'src/blosc/lib/blosc-1.20.1/config.h', 'src/blosc/lib/blosc-1.20.1/fastcopy.c', 'src/blosc/lib/blosc-1.20.1/fastcopy.h', 'src/blosc/lib/blosc-1.20.1/shuffle-avx2.c', 'src/blosc/lib/blosc-1.20.1/shuffle-avx2.h', 'src/blosc/lib/blosc-1.20.1/shuffle-generic.c', 'src/blosc/lib/blosc-1.20.1/shuffle-generic.h', 'src/blosc/lib/blosc-1.20.1/shuffle-sse2.c', 'src/blosc/lib/blosc-1.20.1/shuffle-sse2.h', 'src/blosc/lib/blosc-1.20.1/shuffle.c', 'src/blosc/lib/blosc-1.20.1/shuffle.h', 'src/blosc/lib/blosc-1.20.1/win32/pthread.c', 'src/blosc/lib/blosc-1.20.1/win32/pthread.h', 'src/blosc/lib/blosc-1.20.1/win32/stdint-windows.h', 'src/blosc/lib/lz4-1.9.4/Makefile', 'src/blosc/lib/lz4-1.9.4/lz4.c', 'src/blosc/lib/lz4-1.9.4/lz4.h', 'src/blosc/lib/lz4-1.9.4/lz4hc.c', 'src/blosc/lib/lz4-1.9.4/lz4hc.h', 'src/blosc/lib/snappy-1.1.1/Makefile', 'src/blosc/lib/snappy-1.1.1/snappy-c.cc', 'src/blosc/lib/snappy-1.1.1/snappy-c.h', 'src/blosc/lib/snappy-1.1.1/snappy-internal.h', 'src/blosc/lib/snappy-1.1.1/snappy-sinksource.cc', 'src/blosc/lib/snappy-1.1.1/snappy-sinksource.h', 'src/blosc/lib/snappy-1.1.1/snappy-stubs-internal.cc', 'src/blosc/lib/snappy-1.1.1/snappy-stubs-internal.h', 'src/blosc/lib/snappy-1.1.1/snappy-stubs-public.h', 'src/blosc/lib/snappy-1.1.1/snappy.cc', 'src/blosc/lib/snappy-1.1.1/snappy.h', 'src/bzip2/bzip2-1.0.8/LICENSE', 'src/bzip2/bzip2-1.0.8/Makefile', 'src/bzip2/bzip2-1.0.8/README', 'src/bzip2/bzip2-1.0.8/blocksort.c', 'src/bzip2/bzip2-1.0.8/bzip2.c', 'src/bzip2/bzip2-1.0.8/bzip2recover.c', 'src/bzip2/bzip2-1.0.8/bzlib.c', 'src/bzip2/bzip2-1.0.8/bzlib.h', 'src/bzip2/bzip2-1.0.8/bzlib_private.h', 'src/bzip2/bzip2-1.0.8/compress.c', 'src/bzip2/bzip2-1.0.8/crctable.c', 'src/bzip2/bzip2-1.0.8/decompress.c', 'src/bzip2/bzip2-1.0.8/dlltest.c', 'src/bzip2/bzip2-1.0.8/huffman.c', 'src/bzip2/bzip2-1.0.8/mk251.c', 'src/bzip2/bzip2-1.0.8/randtable.c', 'src/bzip2/bzip2-1.0.8/spewG.c', 'src/bzip2/bzip2-1.0.8/unzcrash.c', 'src/vbz/Makefile', 'src/vbz/Makefile.in', 'src/vbz/third_party/gsl/gsl', 'src/vbz/third_party/gsl/gsl-lite-vc6.hpp', 'src/vbz/third_party/gsl/gsl-lite.h', 'src/vbz/third_party/gsl/gsl-lite.hpp', 'src/vbz/third_party/streamvbyte/Makefile', 'src/vbz/third_party/streamvbyte/Makefile.in', 'src/vbz/third_party/streamvbyte/include/streamvbyte.h', 'src/vbz/third_party/streamvbyte/include/streamvbyte_zigzag.h', 'src/vbz/third_party/streamvbyte/include/streamvbytedelta.h', 'src/vbz/third_party/streamvbyte/src/streamvbyte_0124_decode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_0124_encode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_arm_decode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_arm_encode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_decode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_encode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_shuffle_tables_0124_decode.h', 'src/vbz/third_party/streamvbyte/src/streamvbyte_shuffle_tables_0124_encode.h', 'src/vbz/third_party/streamvbyte/src/streamvbyte_shuffle_tables_decode.h', 'src/vbz/third_party/streamvbyte/src/streamvbyte_shuffle_tables_encode.h', 'src/vbz/third_party/streamvbyte/src/streamvbyte_x64_decode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_x64_encode.c', 'src/vbz/third_party/streamvbyte/src/streamvbyte_zigzag.c', 'src/vbz/third_party/streamvbyte/src/streamvbytedelta.c', 'src/vbz/third_party/streamvbyte/src/streamvbytedelta_decode.c', 'src/vbz/third_party/streamvbyte/src/streamvbytedelta_encode.c', 'src/vbz/third_party/streamvbyte/src/streamvbytedelta_x64_decode.c', 'src/vbz/third_party/streamvbyte/src/streamvbytedelta_x64_encode.c', 'src/vbz/vbz/Makefile', 'src/vbz/vbz/Makefile.in', 'src/vbz/vbz/v0/vbz_streamvbyte.cpp', 'src/vbz/vbz/v0/vbz_streamvbyte.h', 'src/vbz/vbz/v0/vbz_streamvbyte_impl.h', 'src/vbz/vbz/v0/vbz_streamvbyte_impl_sse3.h', 'src/vbz/vbz/v1/vbz_streamvbyte.cpp', 'src/vbz/vbz/v1/vbz_streamvbyte.h', 'src/vbz/vbz/v1/vbz_streamvbyte_impl.h', 'src/vbz/vbz/vbz.cpp', 'src/vbz/vbz/vbz.h', 'src/vbz/vbz/vbz/vbz_export.h', 'src/vbz/vbz_plugin.cpp', 'src/vbz/vbz_plugin.h', 'src/vbz/vbz_plugin_user_utils.h', 'src/zstd/common/allocations.h', 'src/zstd/common/bits.h', 'src/zstd/common/bitstream.h', 'src/zstd/common/compiler.h', 'src/zstd/common/cpu.h', 'src/zstd/common/debug.c', 'src/zstd/common/debug.h', 'src/zstd/common/entropy_common.c', 'src/zstd/common/error_private.c', 'src/zstd/common/error_private.h', 'src/zstd/common/fse.h', 'src/zstd/common/fse_decompress.c', 'src/zstd/common/huf.h', 'src/zstd/common/mem.h', 'src/zstd/common/pool.c', 'src/zstd/common/pool.h', 'src/zstd/common/portability_macros.h', 'src/zstd/common/threading.c', 'src/zstd/common/threading.h', 'src/zstd/common/xxhash.c', 'src/zstd/common/xxhash.h', 'src/zstd/common/zstd_common.c', 'src/zstd/common/zstd_deps.h', 'src/zstd/common/zstd_internal.h', 'src/zstd/common/zstd_trace.h', 'src/zstd/compress/clevels.h', 'src/zstd/compress/fse_compress.c', 'src/zstd/compress/hist.c', 'src/zstd/compress/hist.h', 'src/zstd/compress/huf_compress.c', 'src/zstd/compress/zstd_compress.c', 'src/zstd/compress/zstd_compress_internal.h', 'src/zstd/compress/zstd_compress_literals.c', 'src/zstd/compress/zstd_compress_literals.h', 'src/zstd/compress/zstd_compress_sequences.c', 'src/zstd/compress/zstd_compress_sequences.h', 'src/zstd/compress/zstd_compress_superblock.c', 'src/zstd/compress/zstd_compress_superblock.h', 'src/zstd/compress/zstd_cwksp.h', 'src/zstd/compress/zstd_double_fast.c', 'src/zstd/compress/zstd_double_fast.h', 'src/zstd/compress/zstd_fast.c', 'src/zstd/compress/zstd_fast.h', 'src/zstd/compress/zstd_lazy.c', 'src/zstd/compress/zstd_lazy.h', 'src/zstd/compress/zstd_ldm.c', 'src/zstd/compress/zstd_ldm.h', 'src/zstd/compress/zstd_ldm_geartab.h', 'src/zstd/compress/zstd_opt.c', 'src/zstd/compress/zstd_opt.h', 'src/zstd/compress/zstdmt_compress.c', 'src/zstd/compress/zstdmt_compress.h', 'src/zstd/decompress/huf_decompress.c', 'src/zstd/decompress/huf_decompress_amd64.S', 'src/zstd/decompress/zstd_ddict.c', 'src/zstd/decompress/zstd_ddict.h', 'src/zstd/decompress/zstd_decompress.c', 'src/zstd/decompress/zstd_decompress_block.c', 'src/zstd/decompress/zstd_decompress_block.h', 'src/zstd/decompress/zstd_decompress_internal.h', 'src/zstd/zstd.h', 'src/zstd/zstd_errors.h' are missing files 'configure', 'configure.ac', 'src/Makevars.in', 'src/blosc/Makefile.in', 'src/bzip2/Makefile.in', 'src/lzf/Makefile', 'src/zstd/Makefile.in' have the wrong MD5 checksums ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed configure: is NOT Bioc build machine configure: configuring BZIP2 filter... checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for bzlib.h... yes checking for BZ2_bzDecompressInit in -lbz2... yes configure: Using system bzip2 library configure: configuring the Zstd filter... checking for zstd.h... yes checking for ZSTD_decompress in -lzstd... yes configure: Using system Zstd library configure: configuring the BLOSC filter... checking for blosc.h... yes checking for blosc_compress in -lblosc... yes configure: Using system BLOSC library configure: configuring the VBZ filter configure: creating ./config.status config.status: creating src/bzip2/Makefile config.status: creating src/zstd/Makefile config.status: creating src/blosc/Makefile config.status: creating src/Makevars ** libs using C compiler: 'gcc (Debian 15.2.0-7) 15.2.0' make[1]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src' make -C blosc make[2]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/blosc' g++ -std=gnu++17 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -shared -I/usr/include/hdf5/serial H5Zblosc.cpp \ -Wl,-z,relro -lblosc -lzstd -lz -o libH5Zblosc.so /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libblosc.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libzstd.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[2]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/blosc' make -C bzip2 make[2]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/bzip2' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -shared H5Zbzip2.c -I/usr/include/hdf5/serial \ -lbz2 -Wl,-z,relro -o libH5Zbz2.so -Wl,-z,relro /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libbz2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[2]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/bzip2' make -C lzf make[2]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/lzf' make -C lzf make[3]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/lzf/lzf' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/hdf5/serial -c lzf_c.c gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/hdf5/serial -c lzf_d.c rm -f liblzf.a ar cq liblzf.a lzf_c.o lzf_d.o ranlib liblzf.a make[3]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/lzf/lzf' gcc -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -shared H5Zlzf.c -I/usr/include/hdf5/serial \ -I./lzf/ ./lzf/liblzf.a -Wl,-z,relro -o libH5Zlzf.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[2]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/lzf' make -C zstd make[2]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/zstd' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -shared H5Zzstd.c -I/usr/include/hdf5/serial \ -lzstd -Wl,-z,relro -o libH5Zzstd.so /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/libzstd.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[2]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src/zstd' mkdir -p vbz cp /usr/lib/aarch64-linux-gnu/libvbz_hdf_plugin.so vbz/libH5Zvbz.so mkdir -p "/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.18.1+dfsg/00new/rhdf5filters/lib/" cp bzip2/libH5Zbz2.so blosc/libH5Zblosc.so lzf/libH5Zlzf.so zstd/libH5Zzstd.so vbz/libH5Zvbz.so "/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.18.1+dfsg/00new/rhdf5filters/lib/" gcc -I"/usr/share/R/include" -DNDEBUG -I/usr/include/hdf5/serial -I'/usr/lib/R/site-library/Rhdf5lib/include' -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.5.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c rhdf5filters.c -o rhdf5filters.o gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o rhdf5filters.so rhdf5filters.o -L/usr/lib/R/lib -lR /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/src' installing to /build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/00LOCK-r-bioc-rhdf5filters-1.18.1+dfsg/00new/rhdf5filters/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rhdf5filters) rm -f /build/reproducible-path/r-bioc-rhdf5filters-1.18.1\+dfsg/debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/LICENSE I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-tinytest for Suggests:tinytest I: Using r-bioc-rhdf5 for Suggests:rhdf5 (>= 2.47.7) I: Using r-bioc-rhdf5lib for LinkingTo:Rhdf5lib I: BioConductor API version: r-api-bioc-3.20 I: Use r-bioc-rhdf5filters as Debian binary package for variables substitution debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg' dh_install make[1]: Leaving directory '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg' dh_installdocs -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters install -p -m0644 debian/copyright debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/copyright dh_installchangelogs -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters install -p -m0644 debian/.debhelper/generated/r-bioc-rhdf5filters/dh_installchangelogs.dch.trimmed debian/r-bioc-rhdf5filters/usr/share/doc/r-bioc-rhdf5filters/changelog.Debian dh_installsystemduser -O--buildsystem=R dh_lintian -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/usr/share/lintian/overrides install -p -m0644 debian/r-bioc-rhdf5filters.lintian-overrides debian/r-bioc-rhdf5filters/usr/share/lintian/overrides/r-bioc-rhdf5filters dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R Using 1742213517 as canonical time Normalizing debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/help/figures/logo.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=R cd debian/r-bioc-rhdf5filters chmod a-x usr/share/doc/r-bioc-rhdf5filters/changelog.Debian gzip -9nf usr/share/doc/r-bioc-rhdf5filters/changelog.Debian cd '/build/reproducible-path/r-bioc-rhdf5filters-1.18.1+dfsg' dh_fixperms -O--buildsystem=R find debian/r-bioc-rhdf5filters ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/r-bioc-rhdf5filters/usr/share/doc -type f -a -true -a ! -regex 'debian/r-bioc-rhdf5filters/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-bioc-rhdf5filters/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/r-bioc-rhdf5filters/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-bioc-rhdf5filters -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-bioc-rhdf5filters/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/aarch64-linux-gnu/r-bioc-rhdf5filters.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/r-bioc-rhdf5filters.debug -- debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so dwz: debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so: .debug_info section not present objcopy --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/aarch64-linux-gnu/r-bioc-rhdf5filters.debug chmod 0644 -- debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/aarch64-linux-gnu/r-bioc-rhdf5filters.debug dh_strip -a -O--buildsystem=R install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/75 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/75/7b754594208675918f1b436726ff99550cf9a9.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/75/7b754594208675918f1b436726ff99550cf9a9.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/75/7b754594208675918f1b436726ff99550cf9a9.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/25 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/25/61340d0a1cd95b322c36f08defa7c0c2d478ad.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/25/61340d0a1cd95b322c36f08defa7c0c2d478ad.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/25/61340d0a1cd95b322c36f08defa7c0c2d478ad.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/61 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/61/9c54343ae9d7b50cc093bb393a7aca0ca8acec.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/61/9c54343ae9d7b50cc093bb393a7aca0ca8acec.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/61/9c54343ae9d7b50cc093bb393a7aca0ca8acec.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/42 objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/42/e207d3994d8ffcf5674f9348a52bd22db0e51c.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/42/e207d3994d8ffcf5674f9348a52bd22db0e51c.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/42/e207d3994d8ffcf5674f9348a52bd22db0e51c.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/cc objcopy --only-keep-debug --compress-debug-sections debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/cc/08897b45a835b3874a026112c3b3d33e5d17db.debug chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/cc/08897b45a835b3874a026112c3b3d33e5d17db.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so objcopy --add-gnu-debuglink debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.build-id/cc/08897b45a835b3874a026112c3b3d33e5d17db.debug debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/r-bioc-rhdf5filters/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/r-bioc-rhdf5filters/usr/lib/debug install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc ln -s r-bioc-rhdf5filters debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/usr/share/doc/r-bioc-rhdf5filters-dbgsym install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters dh_makeshlibs -a -O--buildsystem=R rm -f debian/r-bioc-rhdf5filters/DEBIAN/shlibs install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN echo "libvbz_hdf_plugin 0 r-bioc-rhdf5filters (>= 1.18.1+dfsg)" >> debian/r-bioc-rhdf5filters/DEBIAN/shlibs chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/shlibs mv debian/.debhelper/generated/r-bioc-rhdf5filters/triggers.new debian/.debhelper/generated/r-bioc-rhdf5filters/triggers dh_shlibdeps -a -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN dpkg-shlibdeps -Tdebian/r-bioc-rhdf5filters.substvars debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zbz2.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zlzf.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zzstd.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zblosc.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/lib/libH5Zvbz.so debian/r-bioc-rhdf5filters/usr/lib/R/site-library/rhdf5filters/libs/rhdf5filters.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN install -p -m0644 debian/.debhelper/generated/r-bioc-rhdf5filters/triggers debian/r-bioc-rhdf5filters/DEBIAN/triggers dh_gencontrol -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN echo misc:Depends= >> debian/r-bioc-rhdf5filters.substvars echo misc:Pre-Depends= >> debian/r-bioc-rhdf5filters.substvars install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -cdebian/control -Pdebian/.debhelper/r-bioc-rhdf5filters/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=r-bioc-rhdf5filters-dbgsym -DDepends="r-bioc-rhdf5filters (= \${binary:Version})" -DDescription="debug symbols for r-bioc-rhdf5filters" -DBuild-Ids="2561340d0a1cd95b322c36f08defa7c0c2d478ad 42e207d3994d8ffcf5674f9348a52bd22db0e51c 619c54343ae9d7b50cc093bb393a7aca0ca8acec 757b754594208675918f1b436726ff99550cf9a9 cc08897b45a835b3874a026112c3b3d33e5d17db" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/control dpkg-gencontrol -pr-bioc-rhdf5filters -ldebian/changelog -Tdebian/r-bioc-rhdf5filters.substvars -cdebian/control -Pdebian/r-bioc-rhdf5filters chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/control dh_md5sums -O--buildsystem=R install -m0755 -d debian/r-bioc-rhdf5filters/DEBIAN cd debian/r-bioc-rhdf5filters >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/r-bioc-rhdf5filters/DEBIAN/md5sums install -m0755 -d debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN cd debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=R dpkg-deb --root-owner-group --build debian/r-bioc-rhdf5filters .. dpkg-deb --root-owner-group --build debian/.debhelper/r-bioc-rhdf5filters/dbgsym-root .. dpkg-deb: building package 'r-bioc-rhdf5filters-dbgsym' in '../r-bioc-rhdf5filters-dbgsym_1.18.1+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-bioc-rhdf5filters' in '../r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2221248 and its subdirectories I: Current time: Mon Nov 10 06:36:36 -12 2025 I: pbuilder-time-stamp: 1762799796 Mon Nov 10 18:36:37 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Mon Nov 10 18:36:37 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Mon Nov 10 18:37:37 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Mon Nov 10 18:37:37 UTC 2025 I: r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.changes: Format: 1.8 Date: Mon, 17 Mar 2025 13:11:57 +0100 Source: r-bioc-rhdf5filters Binary: r-bioc-rhdf5filters r-bioc-rhdf5filters-dbgsym Architecture: arm64 Version: 1.18.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-rhdf5filters - GNU R HDF5 compression filters Changes: r-bioc-rhdf5filters (1.18.1+dfsg-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.2 (routine-update) * Refreshed the patches Checksums-Sha1: d6d794968b896872d9dc54de7da2ffa9ec66cd21 22440 r-bioc-rhdf5filters-dbgsym_1.18.1+dfsg-1_arm64.deb 4bf5cb7004854c4424c2133aa67a5822f622dad4 11801 r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.buildinfo 38010a322b922b05bdf696ab560962dfe8ec76f9 137420 r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.deb Checksums-Sha256: 8018ce2972d115798db709c7715ba42ec1359a41c55b9515d141f79657da5701 22440 r-bioc-rhdf5filters-dbgsym_1.18.1+dfsg-1_arm64.deb b67d030204468361bb75f0ffcb827e3b24cb7512eeae5eedccf94132264c5584 11801 r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.buildinfo 18767ce86ee73ed91c50563e435d0ce63a44a84dbd21785586f618f305eee182 137420 r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.deb Files: 1d094bbc87f236b6dcd133200e5eac04 22440 debug optional r-bioc-rhdf5filters-dbgsym_1.18.1+dfsg-1_arm64.deb b8ba83e89d8d72ed48cafdca54e940dd 11801 gnu-r optional r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.buildinfo d493be925f7e095ccfd945ee6d641283 137420 gnu-r optional r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.deb Mon Nov 10 18:37:38 UTC 2025 I: diffoscope 308 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_12-129778.service; invocation ID: 67d1a43b9e0b4926978831175b904ead # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QRVqC7Y6/r-bioc-rhdf5filters_1.18.1+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QRVqC7Y6/r-bioc-rhdf5filters_1.18.1+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QRVqC7Y6/r-bioc-rhdf5filters_1.18.1+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QRVqC7Y6/b1/r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QRVqC7Y6/b2/r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 223ms CPU time consumed: 168ms Memory peak: 18.1M (swap: 0B) Mon Nov 10 18:37:38 UTC 2025 I: diffoscope 308 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 10 18:37:38 UTC 2025 I: r-bioc-rhdf5filters from unstable built successfully and reproducibly on arm64. Mon Nov 10 18:37:39 UTC 2025 I: Removing signed r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.buildinfo.asc files: removed './b1/r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.buildinfo.asc' removed './b2/r-bioc-rhdf5filters_1.18.1+dfsg-1_arm64.buildinfo.asc'