Tue Dec 17 19:08:49 UTC 2024 I: starting to build python-pyvcf/unstable/arm64 on jenkins on '2024-12-17 19:08' Tue Dec 17 19:08:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_6/71967/console.log Tue Dec 17 19:08:49 UTC 2024 I: Downloading source for unstable/python-pyvcf=0.6.8+git20170215.476169c-11 --2024-12-17 19:08:49-- http://deb.debian.org/debian/pool/main/p/python-pyvcf/python-pyvcf_0.6.8%2bgit20170215.476169c-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2377 (2.3K) [text/prs.lines.tag] Saving to: ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ 0K .. 100% 330M=0s 2024-12-17 19:08:49 (330 MB/s) - ‘python-pyvcf_0.6.8+git20170215.476169c-11.dsc’ saved [2377/2377] Tue Dec 17 19:08:49 UTC 2024 I: python-pyvcf_0.6.8+git20170215.476169c-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-pyvcf Binary: python3-vcf, pyvcf, python-pyvcf-examples Architecture: any all Version: 0.6.8+git20170215.476169c-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jamescasbon/PyVCF Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pyvcf Vcs-Git: https://salsa.debian.org/med-team/python-pyvcf.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest , python3-pysam Package-List: python-pyvcf-examples deb python optional arch=all python3-vcf deb python optional arch=any pyvcf deb python optional arch=all Checksums-Sha1: fd87bba83272c2a1bbdb7ab633ef90e4b12b3836 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 5680a335404c24260efb2e8488ea18f7ebd87618 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Checksums-Sha256: df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 128b98a270b89df23931de8204327c4771d550a82b94a842d3698d486be89a48 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz Files: 257a20310260fb287a7ec4f2b5a35678 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 975be4f7a144d117a49cea17c46d0410 10704 python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEUtW9Dn1NsITjS1hl1KQc+t2yDbUFAmdF98kACgkQ1KQc+t2y DbUyCxAApjDfCXzyHbFQuojN4hIm2y77pRuuMzCl7h1hJcBD84cBMysyKHqtozqj dL05JodJSNKXIZCJK8t1s0fJendb8Sxhc5gIDgOj4tmO7E543LyXSVAoLtzgh0WA Br3BSXzB3f63+KcIzDOb3C1bY7dx/3XxgkkRMtiNsvsl23GW0enrn5CeAFpWxzoi voNwvHbqfysHnwk0YhdQ1jZytQ2NdcV3Fpo3Z04Isv5FQ8yFsUtXP9RdDgmNCX+y K+Ws1cWU8vX8+kLVLguRyAXsl+tk4jT+Q0JdG2TJgF+fha2WvdWl0tyuLUnDgKuw ptloHlvHZWRYDLJIt94xoR6ZXn7yKJn70M/zjqhu0sksm1Ssg4Zvhi51HL6Syzx+ 1dHSbmnMk8tQugxi22FGRt5+6Kv6NYZR250T0d6UDORJZL80LhyOabUQ9FEhVLLn /rLbVZmd/GIMdojsBZn4K/ZpWdx2U18NRUZHrcYLjDkcAQHli+iyN7Qb2q7kcyKg W9tP2bTRyYbnst1Dal7T/BOCXzfrhAC5BAZdQ9gtcA4urGEaWrzre8qCoGwl4bc1 yghmsjfpwXXm0Q6/Jbeom5iml7JPpIvlxfKoCIuVvfh8gFWQkLiSWnsHWVCj1fhe SVp4YPmOnItQ3jSb+WU6kue2exmyekwfpqyjAgqo5h6NkM7r3Yk= =6lNL -----END PGP SIGNATURE----- Tue Dec 17 19:08:49 UTC 2024 I: Checking whether the package is not for us Tue Dec 17 19:08:49 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Dec 17 19:08:49 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Dec 17 19:10:40 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 17 07:08:51 -12 2024 I: pbuilder-time-stamp: 1734462532 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-11.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Nov 26 16:31:05 2024 gpgv: using RSA key 52D5BD0E7D4DB084E34B5865D4A41CFADDB20DB5 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-pyvcf_0.6.8+git20170215.476169c-11.dsc: no acceptable signature found dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-setuptools.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying quitechar.patch dpkg-source: info: applying replace-pkg-resources-with-importlib.patch dpkg-source: info: applying replace-distutils-with-setuptools.patch dpkg-source: info: applying use-raw-strings-for-regex.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4058415/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e5b6b99412df4ceeaa43245558202fd7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4058415' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aozDcDYw/pbuilderrc_ipqc --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aozDcDYw/b1 --logfile b1/build.log python-pyvcf_0.6.8+git20170215.476169c-11.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4058415/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-pytest, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20085 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-pygments wget 0 packages upgraded, 104 newly installed, 0 to remove and 0 not upgraded. Need to get 58.0 MB of archives. After unpacking 277 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-3 [810 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-3 [1941 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-4 [256 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-2 [23.7 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-3 [1906 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-3 [677 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-2 [852 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-2 [1987 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-3 [198 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-6 [1130 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-12 [91.4 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-3 [723 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.21 [88.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-3 [1532 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.21 [919 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241217 [113 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1 [332 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-2 [30.3 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.8-3 [1983 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.8-3 [4823 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 90 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-2 [1913 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.1-2 [1971 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.1-2 [4709 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libpython3-all-dev arm64 3.12.7-1 [1072 B] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-2 [740 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.7-1 [1052 B] Get: 96 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.8-3 [505 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.1-2 [504 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-all-dev arm64 3.12.7-1 [1076 B] Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB] Fetched 58.0 MB in 0s (117 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20085 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-3_arm64.deb ... Unpacking python3.12-minimal (3.12.8-3) ... Setting up libpython3.12-minimal:arm64 (3.12.8-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20405 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-4_all.deb ... Unpacking tzdata (2024b-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2~rc1-2) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.8-3_arm64.deb ... Unpacking python3.12 (3.12.8-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21468 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../01-libpython3.13-minimal_3.13.1-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.1-2_arm64.deb ... Unpacking python3.13-minimal (3.13.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... 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Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../27-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-3_arm64.deb ... Unpacking gettext (0.22.5-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... 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Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../49-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../50-libnghttp3-9_1.6.0-2_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.6.0-2) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../51-libngtcp2-16_1.9.1-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.9.1-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../52-libngtcp2-crypto-gnutls8_1.9.1-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../53-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../54-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../55-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../56-libcurl3t64-gnutls_8.11.1-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.11.1-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../57-libdeflate0_1.22-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.22-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../58-libexpat1-dev_2.6.4-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.4-1) ... Selecting previously unselected package libhtscodecs2:arm64. Preparing to unpack .../59-libhtscodecs2_1.6.1-1_arm64.deb ... Unpacking libhtscodecs2:arm64 (1.6.1-1) ... Selecting previously unselected package libhts3t64:arm64. Preparing to unpack .../60-libhts3t64_1.20+ds-2_arm64.deb ... Unpacking libhts3t64:arm64 (1.20+ds-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../61-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../62-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../63-libjs-sphinxdoc_8.1.3-2_all.deb ... Unpacking libjs-sphinxdoc (8.1.3-2) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../64-libpython3.12t64_3.12.8-3_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.8-3) ... Selecting previously unselected package zlib1g-dev:arm64. 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Unpacking python3-pytest (8.3.4-1) ... Setting up libhtscodecs2:arm64 (1.6.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-12) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.21) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-3) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.2~rc1-2) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Dec 17 19:09:36 UTC 2024. Universal Time is now: Tue Dec 17 19:09:36 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-2) ... Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up autopoint (0.22.5-3) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.1-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.9.1-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-3) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-2) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-6) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-2) ... Setting up libpython3.13:arm64 (3.13.1-2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.1-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.1-2) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-3) ... Setting up python3.13-dev (3.13.1-2) ... Setting up python3.12 (3.12.8-3) ... Setting up debhelper (13.21) ... Setting up libpython3.12t64:arm64 (3.12.8-3) ... Setting up libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:arm64 (3.12.8-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3.12-dev (3.12.8-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-pysam (0.22.1+ds-2+b3) ... Setting up libpython3-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-all-dev (3.12.7-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up dh-python (6.20241217) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-11_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Ananthu C V dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running egg_info creating PyVCF.egg-info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test running build_ext /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. Compiling vcf/cparse.pyx because it changed. [1/1] Cythonizing vcf/cparse.pyx building 'vcf.cparse' extension creating build/temp.linux-aarch64-cpython-313/vcf aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c vcf/cparse.c -o build/temp.linux-aarch64-cpython-313/vcf/cparse.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/vcf/cparse.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting scripts/vcf_melt -> build/scripts-3.13 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.13 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.13 changing mode of build/scripts-3.13/vcf_melt from 644 to 755 changing mode of build/scripts-3.13/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.13/vcf_sample_filter.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf copying vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test copying vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test running build_ext building 'vcf.cparse' extension creating build/temp.linux-aarch64-cpython-312/vcf aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c vcf/cparse.c -o build/temp.linux-aarch64-cpython-312/vcf/cparse.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/vcf/cparse.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.cpython-312-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.12 copying and adjusting scripts/vcf_melt -> build/scripts-3.12 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.12 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.12 changing mode of build/scripts-3.12/vcf_melt from 644 to 755 changing mode of build/scripts-3.12/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.12/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build; python3.13 -m pytest ============================= test session starts ============================== platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.1 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 3.80s ======================== I: pybuild pybuild:308: mkdir /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf; cp -r /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/vcf/test /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/ mkdir: cannot create directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf': File exists I: pybuild base:311: cd /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build; python3.12 -m pytest ============================= test session starts ============================== platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c plugins: typeguard-4.4.1 collected 104 items vcf/test/test_vcf.py ................................................... [ 49%] ........................................ss.ss........ [100%] ======================== 100 passed, 4 skipped in 3.82s ======================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/sample_filter.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/test_vcf.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.13_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/prof.py to prof.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/filters.py to filters.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/model.py to model.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/sample_filter.py to sample_filter.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/vcf/parser.py to parser.cpython-313.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.13/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.13/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/sample_filter.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/filters.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/model.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/cparse.pyx -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test creating /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__pycache__/test_vcf.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__pycache__ copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/README.md -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/walk_refcall.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/walk_left.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/uncalled_genotypes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/tb.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/tb.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/string_as_flag.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/strelka.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/samtools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/samples-space.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/parse-meta-line.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/null_genotype_mono.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/mixed-filtering.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/metadata-whitespace.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue_49.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-254.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-214.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-201.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-16.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file3.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/issue-140-file1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/info-type-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gatk_26_meta.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/gatk.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/freebayes.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.2.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-sv.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.1-bnd.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/example-4.0.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/contig_idonly.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/bcftools.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/bad-info-character.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/FT.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/1kg.vcf.gz -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/1kg.sites.vcf -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/prof.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/test/test_vcf.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/__init__.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/filters.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/model.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/utils.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf copying /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.12_vcf/build/vcf/parser.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/prof.py to prof.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/filters.py to filters.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/model.py to model.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/sample_filter.py to sample_filter.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/utils.py to utils.cpython-312.pyc byte-compiling /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/vcf/parser.py to parser.cpython-312.pyc running install_egg_info Copying PyVCF.egg-info to /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/lib/python3.12/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/vcf_sample_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.12/vcf_filter.py -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin copying build/scripts-3.12/vcf_melt -> /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_filter.py to 755 changing mode of /build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-vcf/usr/bin/vcf_melt to 755 debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python3-vcf mv `find debian/python3-vcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python3-vcf find debian/python3-vcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python3-vcf -name "__pycache__" | xargs rm -rf mkdir -p debian/pyvcf/usr mv debian/python3-vcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:180: version: 6.20241217 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=None) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:166: skipping package python-pyvcf-examples (missing ${python3:Depends} in Depends/Recommends) D: dh_python3 debhelper:174: source=python-pyvcf, binary packages=['python3-vcf', 'pyvcf'] D: dh_python3 dh_python3:205: processing package python3-vcf... D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.12/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-vcf/usr/lib/python3.13/dist-packages to debian/python3-vcf/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-vcf details = {'requires.txt': set(), 'egg-info': {'debian/python3-vcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.13'), Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-vcf D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3:any', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:205: processing package pyvcf... D: dh_python3 fs:338: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyvcf D: dh_python3 depends:253: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/reproducible-path/python-pyvcf-0.6.8+git20170215.476169c' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb'. dpkg-deb: building package 'python3-vcf' in '../python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb'. dpkg-deb: building package 'python3-vcf-dbgsym' in '../python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb'. dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-11_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo dpkg-genchanges --build=binary -O../python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4058415 and its subdirectories I: Current time: Tue Dec 17 07:10:38 -12 2024 I: pbuilder-time-stamp: 1734462638 Tue Dec 17 19:10:41 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Tue Dec 17 19:10:41 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Tue Dec 17 19:11:53 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Tue Dec 17 19:11:54 UTC 2024 I: python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes: Format: 1.8 Date: Tue, 26 Nov 2024 21:49:45 +0530 Source: python-pyvcf Binary: python-pyvcf-examples python3-vcf python3-vcf-dbgsym pyvcf Architecture: all arm64 Version: 0.6.8+git20170215.476169c-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Ananthu C V Description: python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python python3-vcf - Variant Call Format (VCF) parser for Python 3 pyvcf - helper scripts for Variant Call Format (VCF) parser Closes: 1079359 1083698 Changes: python-pyvcf (0.6.8+git20170215.476169c-11) unstable; urgency=medium . * Team upload. * Drop dependency on python3-pkg-resources (Closes: #1083698) * Fix patch header format * Use setuptools instead of deprecated distutils * Use raw strings to prevent invalid escape sequences in regex (Closes: 1079359) * Use execute_after target instead of overriding dh_install * Bump standards version to 4.7.0 (no changes needed) Checksums-Sha1: cf46b813f3bf375d0c44def30b6845fe88d599ba 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb 10a22e831168c5444473274943c5bbb3bde26686 8500 python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo 092931a7fb361caffafdd9d4a34731caf1be4ee4 252712 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb 04f61d6073656274d7cd51acc5df711d130ffc23 55404 python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb a85188c781641d54421166e9461f0c72d4fd483f 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Checksums-Sha256: 32a3d99d82109541dc3d06bb38d70ed8c9bb442cdfb5803196c5d54a62f383b4 945160 python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb a76fa1e8cf4ca6c226a6537a00c302cc31021e0bad809fc9a7174421dc9c7e46 8500 python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo faefca5d1a8b33a5df1b31a437870f8b6e71be9c7aaf200c85a71b64b5242524 252712 python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb 158f6e0e402d71359d093e129196745e1d7406acaf300f87217f98ed20a37617 55404 python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb 844ebf522606305414f8f1e0e273c4edff2f04711ff1d50a31fca8c21fc95e60 11468 pyvcf_0.6.8+git20170215.476169c-11_all.deb Files: fa5d6b8b108f02e304168b11669f483d 945160 python optional python-pyvcf-examples_0.6.8+git20170215.476169c-11_all.deb ecadf9fb0c4fb333e265d772db3751fc 8500 python optional python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo 37328aea99afafddf0b58df03212655e 252712 debug optional python3-vcf-dbgsym_0.6.8+git20170215.476169c-11_arm64.deb 6da173f7a4937fbb50f7f1a82cb2dc44 55404 python optional python3-vcf_0.6.8+git20170215.476169c-11_arm64.deb e5a5e5011a7e1a8594427d7a19330c9b 11468 python optional pyvcf_0.6.8+git20170215.476169c-11_all.deb Tue Dec 17 19:11:55 UTC 2024 I: diffoscope 284 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_6-71967.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.aozDcDYw/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.aozDcDYw/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.aozDcDYw/python-pyvcf_0.6.8+git20170215.476169c-11.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.aozDcDYw/b1/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.aozDcDYw/b2/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.357s) 0.357s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 662ms CPU time consumed: 660ms Tue Dec 17 19:11:56 UTC 2024 I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists. Tue Dec 17 19:11:56 UTC 2024 I: python-pyvcf from unstable built successfully and reproducibly on arm64. Tue Dec 17 19:11:57 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Dec 17 19:11:57 UTC 2024 I: Submitting 12K b1/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc Tue Dec 17 19:11:58 UTC 2024 I: Submitting 12K b2/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc Tue Dec 17 19:11:59 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Dec 17 19:11:59 UTC 2024 I: Done submitting .buildinfo files. Tue Dec 17 19:11:59 UTC 2024 I: Removing signed python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc files: removed './b1/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc' removed './b2/python-pyvcf_0.6.8+git20170215.476169c-11_arm64.buildinfo.asc'