Sat Jan 18 00:31:23 UTC 2025  I: starting to build python-gffutils/unstable/arm64 on jenkins on '2025-01-18 00:31'
Sat Jan 18 00:31:23 UTC 2025  I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_14/78692/console.log
Sat Jan 18 00:31:23 UTC 2025  I: Downloading source for unstable/python-gffutils=0.13-2
--2025-01-18 00:31:23--  http://deb.debian.org/debian/pool/main/p/python-gffutils/python-gffutils_0.13-2.dsc
Connecting to 46.16.76.132:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2331 (2.3K) [text/prs.lines.tag]
Saving to: ‘python-gffutils_0.13-2.dsc’

     0K ..                                                    100%  343M=0s

2025-01-18 00:31:23 (343 MB/s) - ‘python-gffutils_0.13-2.dsc’ saved [2331/2331]

Sat Jan 18 00:31:23 UTC 2025  I: python-gffutils_0.13-2.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: python-gffutils
Binary: python3-gffutils
Architecture: all
Version: 0.13-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>, Steffen Moeller <moeller@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://daler.github.io/gffutils
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-gffutils
Vcs-Git: https://salsa.debian.org/med-team/python-gffutils.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-pytest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, bedtools, python3-all, python3-setuptools, python3-argcomplete, python3-argh, python3-pyfaidx, python3-pytest, python3-biopython, python3-pybedtools, help2man
Package-List:
 python3-gffutils deb science optional arch=all
Checksums-Sha1:
 1a4b4308dea940cc8306d3d75ea0b760e6abbe9d 1560489 python-gffutils_0.13.orig.tar.gz
 a6da237200df8afe7450472639b908d1828b1ab2 5320 python-gffutils_0.13-2.debian.tar.xz
Checksums-Sha256:
 b0d52f35c014cc0330fb5c4e3c6fea127c90ccf4c5384a825cdb5c8ff330d4eb 1560489 python-gffutils_0.13.orig.tar.gz
 cdcbb1452ce8f03b610d2d38d472204dfb4b99ad21053acd6a90c30da4dd02a4 5320 python-gffutils_0.13-2.debian.tar.xz
Files:
 13970382f37c65378765b7a5e522b9ec 1560489 python-gffutils_0.13.orig.tar.gz
 263259a0639f28029bd6291d1cf2a954 5320 python-gffutils_0.13-2.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=siyB
-----END PGP SIGNATURE-----
Sat Jan 18 00:31:23 UTC 2025  I: Checking whether the package is not for us
Sat Jan 18 00:31:23 UTC 2025  I: Starting 1st build on remote node codethink01-arm64.debian.net.
Sat Jan 18 00:31:23 UTC 2025  I: Preparing to do remote build '1' on codethink01-arm64.debian.net.
Sat Jan 18 00:37:35 UTC 2025  I: Deleting $TMPDIR on codethink01-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Thu Feb 19 18:54:25 -12 2026
I: pbuilder-time-stamp: 1771570465
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [python-gffutils_0.13-2.dsc]
I: copying [./python-gffutils_0.13.orig.tar.gz]
I: copying [./python-gffutils_0.13-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./python-gffutils_0.13-2.dsc: unsupported subcommand
dpkg-source: info: extracting python-gffutils in python-gffutils-0.13
dpkg-source: info: unpacking python-gffutils_0.13.orig.tar.gz
dpkg-source: info: unpacking python-gffutils_0.13-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python3
dpkg-source: info: applying fix-version.patch
dpkg-source: info: applying pr235.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/533445/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='unstable'
  HOME='/root'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  INVOCATION_ID='c40f688f18a948909ba101dd1e103068'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='533445'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/pbuilderrc_Oq7x --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/b1 --logfile b1/build.log python-gffutils_0.13-2.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://192.168.101.4:3128'
I: uname -a
  Linux codethink01-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/533445/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-sequence-python3, bedtools, python3-all, python3-setuptools, python3-argcomplete, python3-argh, python3-pyfaidx, python3-pytest, python3-biopython, python3-pybedtools, help2man
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19965 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however:
  Package dh-sequence-python3 is not installed.
 pbuilder-satisfydepends-dummy depends on bedtools; however:
  Package bedtools is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all; however:
  Package python3-all is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on python3-argcomplete; however:
  Package python3-argcomplete is not installed.
 pbuilder-satisfydepends-dummy depends on python3-argh; however:
  Package python3-argh is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pyfaidx; however:
  Package python3-pyfaidx is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pytest; however:
  Package python3-pytest is not installed.
 pbuilder-satisfydepends-dummy depends on python3-biopython; however:
  Package python3-biopython is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pybedtools; however:
  Package python3-pybedtools is not installed.
 pbuilder-satisfydepends-dummy depends on help2man; however:
  Package help2man is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libp11-kit0{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtasn1-6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-argcomplete{a} python3-argh{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-importlib-metadata{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-pybedtools{a} python3-pyfaidx{a} python3-pysam{a} python3-pytest{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx ncbi-blast+ publicsuffix python-biopython-doc python3-olefile python3-pygments shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 154 newly installed, 0 to remove and 0 not upgraded.
Need to get 85.3 MB of archives. After unpacking 322 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.1-2 [27.0 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-6 [257 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.1-3 [740 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.1-2 [9952 B]
Get: 15 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.1-2 [28.0 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 bedtools arm64 2.31.1+dfsg-2+b1 [601 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.23 [90.6 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 39 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 41 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.23 [919 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-importlib-metadata all 8.5.0-1 [21.0 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250108 [113 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.45-1 [273 kB]
Get: 68 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+23.2 [216 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2 [317 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2 [386 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get: 96 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB]
Get: 103 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB]
Get: 104 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB]
Get: 105 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 106 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 107 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 108 http://deb.debian.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1+b1 [331 kB]
Get: 109 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-1+b1 [42.5 kB]
Get: 110 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 111 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-14 [361 kB]
Get: 112 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-2 [1413 kB]
Get: 113 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 114 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1 [443 kB]
Get: 115 http://deb.debian.org/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get: 116 http://deb.debian.org/debian unstable/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB]
Get: 117 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB]
Get: 118 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 119 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB]
Get: 120 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB]
Get: 121 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get: 122 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 123 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 124 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get: 125 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
Get: 126 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB]
Get: 127 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB]
Get: 128 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB]
Get: 129 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 130 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 131 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get: 132 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB]
Get: 133 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB]
Get: 134 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.8-5 [677 kB]
Get: 135 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.13.1-2 [1056 B]
Get: 136 http://deb.debian.org/debian unstable/main arm64 python3-argcomplete all 3.5.3-1 [40.4 kB]
Get: 137 http://deb.debian.org/debian unstable/main arm64 python3-argh all 0.31.3-1 [26.6 kB]
Get: 138 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:1.26.4+ds-13 [3815 kB]
Get: 139 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 140 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 10.4.0-1.1 [498 kB]
Get: 141 http://deb.debian.org/debian unstable/main arm64 python3-cairo arm64 1.26.1-2+b1 [130 kB]
Get: 142 http://deb.debian.org/debian unstable/main arm64 python3-freetype all 2.5.1-1 [89.3 kB]
Get: 143 http://deb.debian.org/debian unstable/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B]
Get: 144 http://deb.debian.org/debian unstable/main arm64 python3-reportlab all 4.2.5-1 [1117 kB]
Get: 145 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB]
Get: 146 http://deb.debian.org/debian unstable/main arm64 w3c-sgml-lib all 1.3-3 [273 kB]
Get: 147 http://deb.debian.org/debian unstable/main arm64 python3-biopython arm64 1.84+dfsg-4+b1 [1644 kB]
Get: 148 http://deb.debian.org/debian unstable/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get: 149 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB]
Get: 150 http://deb.debian.org/debian unstable/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get: 151 http://deb.debian.org/debian unstable/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB]
Get: 152 http://deb.debian.org/debian unstable/main arm64 python3-pybedtools arm64 0.10.0-4 [12.3 MB]
Get: 153 http://deb.debian.org/debian unstable/main arm64 python3-pyfaidx all 0.8.1.3-1 [29.1 kB]
Get: 154 http://deb.debian.org/debian unstable/main arm64 python3-pytest all 8.3.4-1 [250 kB]
Fetched 85.3 MB in 1s (70.3 MB/s)
Preconfiguring packages ...
Selecting previously unselected package liblocale-gettext-perl.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19965 files and directories currently installed.)
Preparing to unpack .../liblocale-gettext-perl_1.07-7+b1_arm64.deb ...
Unpacking liblocale-gettext-perl (1.07-7+b1) ...
Selecting previously unselected package libpython3.13-minimal:arm64.
Preparing to unpack .../libpython3.13-minimal_3.13.1-3_arm64.deb ...
Unpacking libpython3.13-minimal:arm64 (3.13.1-3) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ...
Unpacking libexpat1:arm64 (2.6.4-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.1-3_arm64.deb ...
Unpacking python3.13-minimal (3.13.1-3) ...
Setting up libpython3.13-minimal:arm64 (3.13.1-3) ...
Setting up libexpat1:arm64 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.1-3) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20314 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.1-2_arm64.deb ...
Unpacking python3-minimal (3.13.1-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../3-tzdata_2024b-6_all.deb ...
Unpacking tzdata (2024b-6) ...
Selecting previously unselected package libffi8:arm64.
Preparing to unpack .../4-libffi8_3.4.6-1_arm64.deb ...
Unpacking libffi8:arm64 (3.4.6-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../5-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:arm64.
Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ...
Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:arm64 (8.2-6) ...
Selecting previously unselected package libpython3.13-stdlib:arm64.
Preparing to unpack .../7-libpython3.13-stdlib_3.13.1-3_arm64.deb ...
Unpacking libpython3.13-stdlib:arm64 (3.13.1-3) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../8-python3.13_3.13.1-3_arm64.deb ...
Unpacking python3.13 (3.13.1-3) ...
Selecting previously unselected package libpython3-stdlib:arm64.
Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_arm64.deb ...
Unpacking libpython3-stdlib:arm64 (3.13.1-2) ...
Setting up python3-minimal (3.13.1-2) ...
Selecting previously unselected package python3.
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21324 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.1-2_arm64.deb ...
Unpacking python3 (3.13.1-2) ...
Selecting previously unselected package libpython3.12-minimal:arm64.
Preparing to unpack .../001-libpython3.12-minimal_3.12.8-5_arm64.deb ...
Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ...
Selecting previously unselected package python3.12-minimal.
Preparing to unpack .../002-python3.12-minimal_3.12.8-5_arm64.deb ...
Unpacking python3.12-minimal (3.12.8-5) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../003-sgml-base_1.31_all.deb ...
Unpacking sgml-base (1.31) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:arm64.
Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ...
Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../008-gettext-base_0.23.1-1_arm64.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../010-groff-base_1.23.0-7_arm64.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../011-bsdextrautils_2.40.4-1_arm64.deb ...
Unpacking bsdextrautils (2.40.4-1) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../014-m4_1.4.19-5_arm64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../015-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../016-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../017-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../018-autopoint_0.23.1-1_all.deb ...
Unpacking autopoint (0.23.1-1) ...
Selecting previously unselected package bedtools.
Preparing to unpack .../019-bedtools_2.31.1+dfsg-2+b1_arm64.deb ...
Unpacking bedtools (2.31.1+dfsg-2+b1) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../020-libdebhelper-perl_13.23_all.deb ...
Unpacking libdebhelper-perl (13.23) ...
Selecting previously unselected package libtool.
Preparing to unpack .../021-libtool_2.5.4-2_all.deb ...
Unpacking libtool (2.5.4-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../022-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../025-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:arm64.
Preparing to unpack .../026-libelf1t64_0.192-4_arm64.deb ...
Unpacking libelf1t64:arm64 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../027-dwz_0.15-1+b1_arm64.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libunistring5:arm64.
Preparing to unpack .../028-libunistring5_1.3-1_arm64.deb ...
Unpacking libunistring5:arm64 (1.3-1) ...
Selecting previously unselected package libicu72:arm64.
Preparing to unpack .../029-libicu72_72.1-6_arm64.deb ...
Unpacking libicu72:arm64 (72.1-6) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ...
Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../031-gettext_0.23.1-1_arm64.deb ...
Unpacking gettext (0.23.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../034-debhelper_13.23_all.deb ...
Unpacking debhelper (13.23) ...
Selecting previously unselected package python3-autocommand.
Preparing to unpack .../035-python3-autocommand_2.2.2-3_all.deb ...
Unpacking python3-autocommand (2.2.2-3) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../036-python3-more-itertools_10.5.0-1_all.deb ...
Unpacking python3-more-itertools (10.5.0-1) ...
Selecting previously unselected package python3-typing-extensions.
Preparing to unpack .../037-python3-typing-extensions_4.12.2-2_all.deb ...
Unpacking python3-typing-extensions (4.12.2-2) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../038-python3-zipp_3.21.0-1_all.deb ...
Unpacking python3-zipp (3.21.0-1) ...
Selecting previously unselected package python3-importlib-metadata.
Preparing to unpack .../039-python3-importlib-metadata_8.5.0-1_all.deb ...
Unpacking python3-importlib-metadata (8.5.0-1) ...
Selecting previously unselected package python3-typeguard.
Preparing to unpack .../040-python3-typeguard_4.4.1-1_all.deb ...
Unpacking python3-typeguard (4.4.1-1) ...
Selecting previously unselected package python3-inflect.
Preparing to unpack .../041-python3-inflect_7.3.1-2_all.deb ...
Unpacking python3-inflect (7.3.1-2) ...
Selecting previously unselected package python3-jaraco.context.
Preparing to unpack .../042-python3-jaraco.context_6.0.0-1_all.deb ...
Unpacking python3-jaraco.context (6.0.0-1) ...
Selecting previously unselected package python3-jaraco.functools.
Preparing to unpack .../043-python3-jaraco.functools_4.1.0-1_all.deb ...
Unpacking python3-jaraco.functools (4.1.0-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../044-python3-pkg-resources_75.6.0-1_all.deb ...
Unpacking python3-pkg-resources (75.6.0-1) ...
Selecting previously unselected package python3-jaraco.text.
Preparing to unpack .../045-python3-jaraco.text_4.0.0-1_all.deb ...
Unpacking python3-jaraco.text (4.0.0-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../046-python3-setuptools_75.6.0-1_all.deb ...
Unpacking python3-setuptools (75.6.0-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../047-dh-python_6.20250108_all.deb ...
Unpacking dh-python (6.20250108) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../048-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../049-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package libfontenc1:arm64.
Preparing to unpack .../050-libfontenc1_1%3a1.1.8-1+b2_arm64.deb ...
Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ...
Selecting previously unselected package libbrotli1:arm64.
Preparing to unpack .../051-libbrotli1_1.1.0-2+b6_arm64.deb ...
Unpacking libbrotli1:arm64 (1.1.0-2+b6) ...
Selecting previously unselected package libpng16-16t64:arm64.
Preparing to unpack .../052-libpng16-16t64_1.6.45-1_arm64.deb ...
Unpacking libpng16-16t64:arm64 (1.6.45-1) ...
Selecting previously unselected package libfreetype6:arm64.
Preparing to unpack .../053-libfreetype6_2.13.3+dfsg-1_arm64.deb ...
Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../054-x11-common_1%3a7.7+23.2_all.deb ...
Unpacking x11-common (1:7.7+23.2) ...
Selecting previously unselected package xfonts-encodings.
Preparing to unpack .../055-xfonts-encodings_1%3a1.0.4-2.2_all.deb ...
Unpacking xfonts-encodings (1:1.0.4-2.2) ...
Selecting previously unselected package xfonts-utils.
Preparing to unpack .../056-xfonts-utils_1%3a7.7+7_arm64.deb ...
Unpacking xfonts-utils (1:7.7+7) ...
Selecting previously unselected package fonts-urw-base35.
Preparing to unpack .../057-fonts-urw-base35_20200910-8_all.deb ...
Unpacking fonts-urw-base35 (20200910-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../058-fontconfig-config_2.15.0-2_arm64.deb ...
Unpacking fontconfig-config (2.15.0-2) ...
Selecting previously unselected package help2man.
Preparing to unpack .../059-help2man_1.49.3+b1_arm64.deb ...
Unpacking help2man (1.49.3+b1) ...
Selecting previously unselected package libblas3:arm64.
Preparing to unpack .../060-libblas3_3.12.0-4_arm64.deb ...
Unpacking libblas3:arm64 (3.12.0-4) ...
Selecting previously unselected package libfontconfig1:arm64.
Preparing to unpack .../061-libfontconfig1_2.15.0-2_arm64.deb ...
Unpacking libfontconfig1:arm64 (2.15.0-2) ...
Selecting previously unselected package libpixman-1-0:arm64.
Preparing to unpack .../062-libpixman-1-0_0.44.0-3_arm64.deb ...
Unpacking libpixman-1-0:arm64 (0.44.0-3) ...
Selecting previously unselected package libxau6:arm64.
Preparing to unpack .../063-libxau6_1%3a1.0.11-1_arm64.deb ...
Unpacking libxau6:arm64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:arm64.
Preparing to unpack .../064-libxdmcp6_1%3a1.1.5-1_arm64.deb ...
Unpacking libxdmcp6:arm64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:arm64.
Preparing to unpack .../065-libxcb1_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb1:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../066-libx11-data_2%3a1.8.10-2_all.deb ...
Unpacking libx11-data (2:1.8.10-2) ...
Selecting previously unselected package libx11-6:arm64.
Preparing to unpack .../067-libx11-6_2%3a1.8.10-2_arm64.deb ...
Unpacking libx11-6:arm64 (2:1.8.10-2) ...
Selecting previously unselected package libxcb-render0:arm64.
Preparing to unpack .../068-libxcb-render0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-render0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:arm64.
Preparing to unpack .../069-libxcb-shm0_1.17.0-2+b1_arm64.deb ...
Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:arm64.
Preparing to unpack .../070-libxext6_2%3a1.3.4-1+b3_arm64.deb ...
Unpacking libxext6:arm64 (2:1.3.4-1+b3) ...
Selecting previously unselected package libxrender1:arm64.
Preparing to unpack .../071-libxrender1_1%3a0.9.10-1.1+b3_arm64.deb ...
Unpacking libxrender1:arm64 (1:0.9.10-1.1+b3) ...
Selecting previously unselected package libcairo2:arm64.
Preparing to unpack .../072-libcairo2_1.18.2-2_arm64.deb ...
Unpacking libcairo2:arm64 (1.18.2-2) ...
Selecting previously unselected package libcom-err2:arm64.
Preparing to unpack .../073-libcom-err2_1.47.2-1_arm64.deb ...
Unpacking libcom-err2:arm64 (1.47.2-1) ...
Selecting previously unselected package libidn2-0:arm64.
Preparing to unpack .../074-libidn2-0_2.3.7-2+b1_arm64.deb ...
Unpacking libidn2-0:arm64 (2.3.7-2+b1) ...
Selecting previously unselected package libp11-kit0:arm64.
Preparing to unpack .../075-libp11-kit0_0.25.5-3_arm64.deb ...
Unpacking libp11-kit0:arm64 (0.25.5-3) ...
Selecting previously unselected package libtasn1-6:arm64.
Preparing to unpack .../076-libtasn1-6_4.19.0-3+b3_arm64.deb ...
Unpacking libtasn1-6:arm64 (4.19.0-3+b3) ...
Selecting previously unselected package libgnutls30t64:arm64.
Preparing to unpack .../077-libgnutls30t64_3.8.8-2_arm64.deb ...
Unpacking libgnutls30t64:arm64 (3.8.8-2) ...
Selecting previously unselected package libkrb5support0:arm64.
Preparing to unpack .../078-libkrb5support0_1.21.3-4_arm64.deb ...
Unpacking libkrb5support0:arm64 (1.21.3-4) ...
Selecting previously unselected package libk5crypto3:arm64.
Preparing to unpack .../079-libk5crypto3_1.21.3-4_arm64.deb ...
Unpacking libk5crypto3:arm64 (1.21.3-4) ...
Selecting previously unselected package libkeyutils1:arm64.
Preparing to unpack .../080-libkeyutils1_1.6.3-4_arm64.deb ...
Unpacking libkeyutils1:arm64 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:arm64.
Preparing to unpack .../081-libkrb5-3_1.21.3-4_arm64.deb ...
Unpacking libkrb5-3:arm64 (1.21.3-4) ...
Selecting previously unselected package libgssapi-krb5-2:arm64.
Preparing to unpack .../082-libgssapi-krb5-2_1.21.3-4_arm64.deb ...
Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ...
Selecting previously unselected package libsasl2-modules-db:arm64.
Preparing to unpack .../083-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ...
Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libsasl2-2:arm64.
Preparing to unpack .../084-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ...
Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ...
Selecting previously unselected package libldap2:arm64.
Preparing to unpack .../085-libldap2_2.6.9+dfsg-1_arm64.deb ...
Unpacking libldap2:arm64 (2.6.9+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:arm64.
Preparing to unpack .../086-libnghttp2-14_1.64.0-1_arm64.deb ...
Unpacking libnghttp2-14:arm64 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:arm64.
Preparing to unpack .../087-libnghttp3-9_1.6.0-2_arm64.deb ...
Unpacking libnghttp3-9:arm64 (1.6.0-2) ...
Selecting previously unselected package libngtcp2-16:arm64.
Preparing to unpack .../088-libngtcp2-16_1.9.1-1_arm64.deb ...
Unpacking libngtcp2-16:arm64 (1.9.1-1) ...
Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64.
Preparing to unpack .../089-libngtcp2-crypto-gnutls8_1.9.1-1_arm64.deb ...
Unpacking libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ...
Selecting previously unselected package libpsl5t64:arm64.
Preparing to unpack .../090-libpsl5t64_0.21.2-1.1+b1_arm64.deb ...
Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Selecting previously unselected package librtmp1:arm64.
Preparing to unpack .../091-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ...
Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:arm64.
Preparing to unpack .../092-libssh2-1t64_1.11.1-1_arm64.deb ...
Unpacking libssh2-1t64:arm64 (1.11.1-1) ...
Selecting previously unselected package libcurl3t64-gnutls:arm64.
Preparing to unpack .../093-libcurl3t64-gnutls_8.11.1-1+b1_arm64.deb ...
Unpacking libcurl3t64-gnutls:arm64 (8.11.1-1+b1) ...
Selecting previously unselected package libdeflate0:arm64.
Preparing to unpack .../094-libdeflate0_1.23-1+b1_arm64.deb ...
Unpacking libdeflate0:arm64 (1.23-1+b1) ...
Selecting previously unselected package libfribidi0:arm64.
Preparing to unpack .../095-libfribidi0_1.0.16-1_arm64.deb ...
Unpacking libfribidi0:arm64 (1.0.16-1) ...
Selecting previously unselected package libgfortran5:arm64.
Preparing to unpack .../096-libgfortran5_14.2.0-14_arm64.deb ...
Unpacking libgfortran5:arm64 (14.2.0-14) ...
Selecting previously unselected package libglib2.0-0t64:arm64.
Preparing to unpack .../097-libglib2.0-0t64_2.82.4-2_arm64.deb ...
Unpacking libglib2.0-0t64:arm64 (2.82.4-2) ...
Selecting previously unselected package libgraphite2-3:arm64.
Preparing to unpack .../098-libgraphite2-3_1.3.14-2+b1_arm64.deb ...
Unpacking libgraphite2-3:arm64 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:arm64.
Preparing to unpack .../099-libharfbuzz0b_10.2.0-1_arm64.deb ...
Unpacking libharfbuzz0b:arm64 (10.2.0-1) ...
Selecting previously unselected package libhtscodecs2:arm64.
Preparing to unpack .../100-libhtscodecs2_1.6.1-1_arm64.deb ...
Unpacking libhtscodecs2:arm64 (1.6.1-1) ...
Selecting previously unselected package libhts3t64:arm64.
Preparing to unpack .../101-libhts3t64_1.20+ds-2_arm64.deb ...
Unpacking libhts3t64:arm64 (1.20+ds-2) ...
Selecting previously unselected package libimagequant0:arm64.
Preparing to unpack .../102-libimagequant0_2.18.0-1+b2_arm64.deb ...
Unpacking libimagequant0:arm64 (2.18.0-1+b2) ...
Selecting previously unselected package libjbig0:arm64.
Preparing to unpack .../103-libjbig0_2.1-6.1+b2_arm64.deb ...
Unpacking libjbig0:arm64 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:arm64.
Preparing to unpack .../104-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ...
Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ...
Selecting previously unselected package liblapack3:arm64.
Preparing to unpack .../105-liblapack3_3.12.0-4_arm64.deb ...
Unpacking liblapack3:arm64 (3.12.0-4) ...
Selecting previously unselected package liblcms2-2:arm64.
Preparing to unpack .../106-liblcms2-2_2.16-2_arm64.deb ...
Unpacking liblcms2-2:arm64 (2.16-2) ...
Selecting previously unselected package liblerc4:arm64.
Preparing to unpack .../107-liblerc4_4.0.0+ds-5_arm64.deb ...
Unpacking liblerc4:arm64 (4.0.0+ds-5) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../108-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:arm64.
Preparing to unpack .../109-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ...
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libnsl2:arm64.
Preparing to unpack .../110-libnsl2_1.3.0-3+b3_arm64.deb ...
Unpacking libnsl2:arm64 (1.3.0-3+b3) ...
Selecting previously unselected package libopenjp2-7:arm64.
Preparing to unpack .../111-libopenjp2-7_2.5.0-2+b4_arm64.deb ...
Unpacking libopenjp2-7:arm64 (2.5.0-2+b4) ...
Selecting previously unselected package libpython3.12-stdlib:arm64.
Preparing to unpack .../112-libpython3.12-stdlib_3.12.8-5_arm64.deb ...
Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ...
Selecting previously unselected package libraqm0:arm64.
Preparing to unpack .../113-libraqm0_0.10.2-1_arm64.deb ...
Unpacking libraqm0:arm64 (0.10.2-1) ...
Selecting previously unselected package libsharpyuv0:arm64.
Preparing to unpack .../114-libsharpyuv0_1.5.0-0.1_arm64.deb ...
Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ...
Selecting previously unselected package libwebp7:arm64.
Preparing to unpack .../115-libwebp7_1.5.0-0.1_arm64.deb ...
Unpacking libwebp7:arm64 (1.5.0-0.1) ...
Selecting previously unselected package libtiff6:arm64.
Preparing to unpack .../116-libtiff6_4.5.1+git230720-5_arm64.deb ...
Unpacking libtiff6:arm64 (4.5.1+git230720-5) ...
Selecting previously unselected package libwebpdemux2:arm64.
Preparing to unpack .../117-libwebpdemux2_1.5.0-0.1_arm64.deb ...
Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ...
Selecting previously unselected package libwebpmux3:arm64.
Preparing to unpack .../118-libwebpmux3_1.5.0-0.1_arm64.deb ...
Unpacking libwebpmux3:arm64 (1.5.0-0.1) ...
Selecting previously unselected package python3.12.
Preparing to unpack .../119-python3.12_3.12.8-5_arm64.deb ...
Unpacking python3.12 (3.12.8-5) ...
Selecting previously unselected package python3-all.
Preparing to unpack .../120-python3-all_3.13.1-2_arm64.deb ...
Unpacking python3-all (3.13.1-2) ...
Selecting previously unselected package python3-argcomplete.
Preparing to unpack .../121-python3-argcomplete_3.5.3-1_all.deb ...
Unpacking python3-argcomplete (3.5.3-1) ...
Selecting previously unselected package python3-argh.
Preparing to unpack .../122-python3-argh_0.31.3-1_all.deb ...
Unpacking python3-argh (0.31.3-1) ...
Selecting previously unselected package python3-numpy.
Preparing to unpack .../123-python3-numpy_1%3a1.26.4+ds-13_arm64.deb ...
Unpacking python3-numpy (1:1.26.4+ds-13) ...
Selecting previously unselected package python3-chardet.
Preparing to unpack .../124-python3-chardet_5.2.0+dfsg-2_all.deb ...
Unpacking python3-chardet (5.2.0+dfsg-2) ...
Selecting previously unselected package python3-pil:arm64.
Preparing to unpack .../125-python3-pil_10.4.0-1.1_arm64.deb ...
Unpacking python3-pil:arm64 (10.4.0-1.1) ...
Selecting previously unselected package python3-cairo.
Preparing to unpack .../126-python3-cairo_1.26.1-2+b1_arm64.deb ...
Unpacking python3-cairo (1.26.1-2+b1) ...
Selecting previously unselected package python3-freetype.
Preparing to unpack .../127-python3-freetype_2.5.1-1_all.deb ...
Unpacking python3-freetype (2.5.1-1) ...
Selecting previously unselected package python3-rlpycairo.
Preparing to unpack .../128-python3-rlpycairo_0.3.0-3_all.deb ...
Unpacking python3-rlpycairo (0.3.0-3) ...
Selecting previously unselected package python3-reportlab.
Preparing to unpack .../129-python3-reportlab_4.2.5-1_all.deb ...
Unpacking python3-reportlab (4.2.5-1) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../130-xml-core_0.19_all.deb ...
Unpacking xml-core (0.19) ...
Selecting previously unselected package w3c-sgml-lib.
Preparing to unpack .../131-w3c-sgml-lib_1.3-3_all.deb ...
Unpacking w3c-sgml-lib (1.3-3) ...
Selecting previously unselected package python3-biopython.
Preparing to unpack .../132-python3-biopython_1.84+dfsg-4+b1_arm64.deb ...
Unpacking python3-biopython (1.84+dfsg-4+b1) ...
Selecting previously unselected package python3-iniconfig.
Preparing to unpack .../133-python3-iniconfig_1.1.1-2_all.deb ...
Unpacking python3-iniconfig (1.1.1-2) ...
Selecting previously unselected package python3-packaging.
Preparing to unpack .../134-python3-packaging_24.2-1_all.deb ...
Unpacking python3-packaging (24.2-1) ...
Selecting previously unselected package python3-pluggy.
Preparing to unpack .../135-python3-pluggy_1.5.0-1_all.deb ...
Unpacking python3-pluggy (1.5.0-1) ...
Selecting previously unselected package python3-pysam.
Preparing to unpack .../136-python3-pysam_0.22.1+ds-2+b3_arm64.deb ...
Unpacking python3-pysam (0.22.1+ds-2+b3) ...
Selecting previously unselected package python3-pybedtools.
Preparing to unpack .../137-python3-pybedtools_0.10.0-4_arm64.deb ...
Unpacking python3-pybedtools (0.10.0-4) ...
Selecting previously unselected package python3-pyfaidx.
Preparing to unpack .../138-python3-pyfaidx_0.8.1.3-1_all.deb ...
Unpacking python3-pyfaidx (0.8.1.3-1) ...
Selecting previously unselected package python3-pytest.
Preparing to unpack .../139-python3-pytest_8.3.4-1_all.deb ...
Unpacking python3-pytest (8.3.4-1) ...
Setting up libhtscodecs2:arm64 (1.6.1-1) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:arm64 (1.5.8-1) ...
Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ...
Setting up liblcms2-2:arm64 (2.16-2) ...
Setting up libpixman-1-0:arm64 (0.44.0-3) ...
Setting up libsharpyuv0:arm64 (1.5.0-0.1) ...
Setting up libxau6:arm64 (1:1.0.11-1) ...
Setting up libxdmcp6:arm64 (1:1.1.5-1) ...
Setting up libkeyutils1:arm64 (1.6.3-4) ...
Setting up libxcb1:arm64 (1.17.0-2+b1) ...
Setting up libicu72:arm64 (72.1-6) ...
Setting up liblerc4:arm64 (4.0.0+ds-5) ...
Setting up bsdextrautils (2.40.4-1) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libxcb-render0:arm64 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up libdebhelper-perl (13.23) ...
Setting up libbrotli1:arm64 (1.1.0-2+b6) ...
Setting up libmagic1t64:arm64 (1:5.45-3+b1) ...
Setting up libpython3.12-minimal:arm64 (3.12.8-5) ...
Setting up x11-common (1:7.7+23.2) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libnghttp2-14:arm64 (1.64.0-1) ...
Setting up libdeflate0:arm64 (1.23-1+b1) ...
Setting up gettext-base (0.23.1-1) ...
Setting up m4 (1.4.19-5) ...
Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ...
Setting up libcom-err2:arm64 (1.47.2-1) ...
Setting up file (1:5.45-3+b1) ...
Setting up libjbig0:arm64 (2.1-6.1+b2) ...
Setting up libelf1t64:arm64 (0.192-4) ...
Setting up libkrb5support0:arm64 (1.21.3-4) ...
Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up tzdata (2024b-6) ...

Current default time zone: 'Etc/UTC'
Local time is now:      Fri Feb 20 06:55:35 UTC 2026.
Universal Time is now:  Fri Feb 20 06:55:35 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:arm64 (3.12.0-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up xfonts-encodings (1:1.0.4-2.2) ...
Setting up libfribidi0:arm64 (1.0.16-1) ...
Setting up libimagequant0:arm64 (2.18.0-1+b2) ...
Setting up libunistring5:arm64 (1.3-1) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:arm64 (1.6.45-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libk5crypto3:arm64 (1.21.3-4) ...
Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ...
Setting up libgfortran5:arm64 (14.2.0-14) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:arm64 (1.6.0-2) ...
Setting up libwebp7:arm64 (1.5.0-0.1) ...
Setting up libffi8:arm64 (3.4.6-1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:arm64 (4.5.1+git230720-5) ...
Setting up libuchardet0:arm64 (0.0.8-1+b2) ...
Setting up libtasn1-6:arm64 (4.19.0-3+b3) ...
Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ...
Setting up libx11-6:arm64 (2:1.8.10-2) ...
Setting up netbase (6.4) ...
Setting up libngtcp2-16:arm64 (1.9.1-1) ...
Setting up sgml-base (1.31) ...
Setting up libkrb5-3:arm64 (1.21.3-4) ...
Setting up libssh2-1t64:arm64 (1.11.1-1) ...
Setting up libwebpmux3:arm64 (1.5.0-0.1) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up bedtools (2.31.1+dfsg-2+b1) ...
Setting up libldap2:arm64 (2.6.9+dfsg-1) ...
Setting up liblocale-gettext-perl (1.07-7+b1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up python3.12-minimal (3.12.8-5) ...
Setting up liblapack3:arm64 (3.12.0-4) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libxrender1:arm64 (1:0.9.10-1.1+b3) ...
Setting up libtool (2.5.4-2) ...
Setting up fontconfig-config (2.15.0-2) ...
Setting up libwebpdemux2:arm64 (1.5.0-0.1) ...
Setting up libxext6:arm64 (2:1.3.4-1+b3) ...
Setting up libidn2-0:arm64 (2.3.7-2+b1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up help2man (1.49.3+b1) ...
Setting up dh-autoreconf (20) ...
Setting up libglib2.0-0t64:arm64 (2.82.4-2) ...
No schema files found: doing nothing.
Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ...
Setting up libp11-kit0:arm64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ...
Setting up libreadline8t64:arm64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-7) ...
Setting up xml-core (0.19) ...
Setting up libharfbuzz0b:arm64 (10.2.0-1) ...
Setting up libfontconfig1:arm64 (2.15.0-2) ...
Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ...
Setting up libpython3-stdlib:arm64 (3.13.1-2) ...
Setting up libgnutls30t64:arm64 (3.8.8-2) ...
Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ...
Setting up python3.13 (3.13.1-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ...
Setting up python3 (3.13.1-2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-freetype (2.5.1-1) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:arm64 (1.18.2-2) ...
Setting up python3-packaging (24.2-1) ...
Setting up python3-chardet (5.2.0+dfsg-2) ...
Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libraqm0:arm64 (0.10.2-1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-numpy (1:1.26.4+ds-13) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up libnsl2:arm64 (1.3.0-3+b3) ...
Setting up python3-argcomplete (3.5.3-1) ...
Setting up libngtcp2-crypto-gnutls8:arm64 (1.9.1-1) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-argh (0.31.3-1) ...
Setting up python3-cairo (1.26.1-2+b1) ...
Setting up python3-importlib-metadata (8.5.0-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-pytest (8.3.4-1) ...
Setting up python3.12 (3.12.8-5) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up libcurl3t64-gnutls:arm64 (8.11.1-1+b1) ...
Setting up python3-all (3.13.1-2) ...
Setting up debhelper (13.23) ...
Setting up fonts-urw-base35 (20200910-8) ...
Setting up python3-pil:arm64 (10.4.0-1.1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-rlpycairo (0.3.0-3) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-reportlab (4.2.5-1) ...
Setting up libhts3t64:arm64 (1.20+ds-2) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-pyfaidx (0.8.1.3-1) ...
Setting up python3-pysam (0.22.1+ds-2+b3) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up dh-python (6.20250108) ...
Setting up python3-pybedtools (0.10.0-4) ...
Processing triggers for libc-bin (2.40-5) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.84+dfsg-4+b1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/python-gffutils-0.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../python-gffutils_0.13-2_source.changes
dpkg-buildpackage: info: source package python-gffutils
dpkg-buildpackage: info: source version 0.13-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Alexandre Detiste <tchet@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py clean 
running clean
removing '/build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
I: pybuild base:311: python3.13 setup.py clean 
running clean
removing '/build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config 
running config
I: pybuild base:311: python3.13 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13'
dh_auto_build
I: pybuild base:311: /usr/bin/python3.12 setup.py build 
running build
running build_py
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
copying gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts
copying gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
copying gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
copying gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data
running build_scripts
creating build/scripts-3.12
copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.12
changing mode of build/scripts-3.12/gffutils-cli from 644 to 755
I: pybuild base:311: /usr/bin/python3 setup.py build 
running build
running build_py
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
copying gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/scripts
copying gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/scripts
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
copying gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test
creating /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
copying gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data
running build_scripts
creating build/scripts-3.13
copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.13
changing mode of build/scripts-3.13/gffutils-cli from 644 to 755
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --name="Command line interface for python-gffutils." \
	   gffutils-cli > debian/gffutils-cli.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_fetch \- Fetch IDs") \
	   'gffutils-cli fetch' > debian/gffutils-cli-fetch.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_children \- Fetch children from the database according to ID") \
	   'gffutils-cli children' > debian/gffutils-cli-children.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_parents \- Fetch parents from the database according to ID") \
	   'gffutils-cli parents' > debian/gffutils-cli-parents.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_region \- Returns features within provided genomic coordinates") \
	   'gffutils-cli region' > debian/gffutils-cli-region.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_create \- Create a database") \
	   'gffutils-cli create' > debian/gffutils-cli-create.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_common \- Identify child features in common") \
	   'gffutils-cli common' > debian/gffutils-cli-common.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_clean \- Perform various QC operations to clean a GFF or GTF file") \
	   'gffutils-cli clean' > debian/gffutils-cli-clean.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_sanitize \- Sanitize a GFF file") \
	   'gffutils-cli sanitize' > debian/gffutils-cli-sanitize.1
PYTHONPATH=/build/reproducible-path/python-gffutils-0.13 PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games \
	   help2man --version-string=0.13 --no-info \
	   --include <(echo -e "[NAME]\ngffutils-cli_rmdups \- Remove duplicates from a GFF file") \
	   'gffutils-cli rmdups' > debian/gffutils-cli-rmdups.1
make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13'
PATH=/build/reproducible-path/python-gffutils-0.13/gffutils/scripts/:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test
I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build; python3.12 -m pytest --doctest-modules -m 'not slow'
============================= test session starts ==============================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/python-gffutils-0.13
plugins: typeguard-4.4.1
collected 112 items

gffutils/attributes.py .                                                 [  0%]
gffutils/pybedtools_integration.py .                                     [  1%]
gffutils/test/feature_test.py ...........                                [ 11%]
gffutils/test/helpers_test.py ..                                         [ 13%]
gffutils/test/parser_test.py ..................                          [ 29%]
gffutils/test/test_1.py ...........x..........s...........               [ 59%]
gffutils/test/test_biopython_integration.py .                            [ 60%]
gffutils/test/test_cli.py .                                              [ 61%]
gffutils/test/test_issues.py ........................                    [ 83%]
gffutils/test/test_iterators.py ....                                     [ 86%]
gffutils/test/test_merge.py .........                                    [ 94%]
gffutils/test/test_merge_all.py ......                                   [100%]

=============================== warnings summary ===============================
gffutils/test/performance_evaluation.py:190
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @pytest.mark.slow

gffutils/test/performance_evaluation.py:208
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @pytest.mark.slow

.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py:485
  .pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored

.pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string
  /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest.  Did you mean to use `assert` instead of `return`?
    warnings.warn(

.pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py::test_inconsistent_dialect
.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py::test_disable_infer
.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_issues.py::test_pr_172
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation
    warnings.warn(

.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py::test_disable_infer
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation
    warnings.warn(

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 9.56s =============
I: pybuild pybuild:334: find . -name tmp.db -delete
I: pybuild base:311: cd /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build; python3.13 -m pytest --doctest-modules -m 'not slow'
============================= test session starts ==============================
platform linux -- Python 3.13.1, pytest-8.3.4, pluggy-1.5.0
rootdir: /build/reproducible-path/python-gffutils-0.13
plugins: typeguard-4.4.1
collected 112 items

gffutils/attributes.py .                                                 [  0%]
gffutils/pybedtools_integration.py .                                     [  1%]
gffutils/test/feature_test.py ...........                                [ 11%]
gffutils/test/helpers_test.py ..                                         [ 13%]
gffutils/test/parser_test.py ..................                          [ 29%]
gffutils/test/test_1.py ...........x..........s...........               [ 59%]
gffutils/test/test_biopython_integration.py .                            [ 60%]
gffutils/test/test_cli.py .                                              [ 61%]
gffutils/test/test_issues.py ........................                    [ 83%]
gffutils/test/test_iterators.py ....                                     [ 86%]
gffutils/test/test_merge.py .........                                    [ 94%]
gffutils/test/test_merge_all.py ......                                   [100%]

=============================== warnings summary ===============================
gffutils/test/performance_evaluation.py:190
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/performance_evaluation.py:190: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @pytest.mark.slow

gffutils/test/performance_evaluation.py:208
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/performance_evaluation.py:208: PytestUnknownMarkWarning: Unknown pytest.mark.slow - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html
    @pytest.mark.slow

.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_1.py:485
  .pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_1.py:485: PytestCollectionWarning: yield tests were removed in pytest 4.0 - test_region will be ignored

.pybuild/cpython3_3.13_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string
  /usr/lib/python3/dist-packages/_pytest/python.py:163: PytestReturnNotNoneWarning: Expected None, but .pybuild/cpython3_3.13_gffutils/build/gffutils/test/parser_test.py::test_parser_from_string returned True, which will be an error in a future version of pytest.  Did you mean to use `assert` instead of `return`?
    warnings.warn(

.pybuild/cpython3_3.13_gffutils/build/gffutils/test/parser_test.py::test_inconsistent_dialect
.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_1.py::test_disable_infer
.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_issues.py::test_pr_172
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/create.py:770: UserWarning: It appears you have a gene feature in your GTF file. You may want to use the `disable_infer_genes=True` option to speed up database creation
    warnings.warn(

.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_1.py::test_disable_infer
  /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/create.py:763: UserWarning: It appears you have a transcript feature in your GTF file. You may want to use the `disable_infer_transcripts=True` option to speed up database creation
    warnings.warn(

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
============ 110 passed, 1 skipped, 1 xfailed, 8 warnings in 8.38s =============
I: pybuild pybuild:334: find . -name tmp.db -delete
make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_auto_install --destdir=debian/python3-gffutils/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils 
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running build_scripts
running install_lib
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/issue_213.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/tmp.db.bak -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/iterators.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/interface.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/feature.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/attributes.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/exceptions.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/gffwriter.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/helpers.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/bins.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/create.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/inspect.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/convert.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/iterators.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/interface.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/feature.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/attributes.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/exceptions.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/parser.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/gffwriter.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/helpers.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/bins.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/constants.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/create.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__pycache__
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_iterators.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_issues.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_cli.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/test_1.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/performance_evaluation.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/expected.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/conftest.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__pycache__
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts/__pycache__/gffutils-flybase-convert.cpython-312.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.12_gffutils/build/gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/conftest.py to conftest.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/expected.py to expected.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_1.py to test_1.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_cli.py to test_cli.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_issues.py to test_issues.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_iterators.py to test_iterators.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/attributes.py to attributes.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/bins.py to bins.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/constants.py to constants.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/convert.py to convert.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/create.py to create.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/exceptions.py to exceptions.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/inspect.py to inspect.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/interface.py to interface.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/iterators.py to iterators.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/parser.py to parser.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/version.py to version.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/feature.py to feature.cpython-312.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils/helpers.py to helpers.cpython-312.pyc
running install_egg_info
running egg_info
creating gffutils.egg-info
writing gffutils.egg-info/PKG-INFO
writing dependency_links to gffutils.egg-info/dependency_links.txt
writing requirements to gffutils.egg-info/requires.txt
writing top-level names to gffutils.egg-info/top_level.txt
writing manifest file 'gffutils.egg-info/SOURCES.txt'
reading manifest file 'gffutils.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.rst' under directory 'docs/source'
warning: no files found matching '*.py' under directory 'docs/source'
warning: no files found matching '*' under directory 'docs/source/images'
warning: no files found matching 'docs/Makefile'
warning: no files found matching 'docs/make.bat'
warning: no files found matching 'gffutils/test/data/__init__.py'
warning: no files found matching 'gffutils/test/data/t.py'
adding license file 'LICENSE'
writing manifest file 'gffutils.egg-info/SOURCES.txt'
Copying gffutils.egg-info to /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.12/dist-packages/gffutils-0.13.egg-info
Skipping SOURCES.txt
running install_scripts
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin
copying build/scripts-3.12/gffutils-cli -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin
changing mode of /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin/gffutils-cli to 755
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils 
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running build_scripts
running install_lib
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/issue_213.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/tmp.db.bak -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/pybedtools_integration.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/inspect.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/convert.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/biopython_integration.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/iterators.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/merge_criteria.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/interface.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/feature.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/attributes.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/exceptions.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/parser.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/gffwriter.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/helpers.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/bins.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/create.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__pycache__
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/test_merge_all.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/test_merge.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/test_iterators.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/test_issues.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/test_cli.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/test_biopython_integration.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/test_1.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/synth_test_base.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/performance_evaluation.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/parser_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/helpers_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/feature_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/expected.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/attr_test_cases.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/conftest.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__pycache__
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/FBgn0031208.gtf.db -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/F3-unique-3.v2.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/FBgn0031208.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/FBgn0031208.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/dm6-chr2L.fa -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/dm6-chr2L.fa.fai -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/download-large-annotation-files.sh -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/ensembl_gtf.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/gencode-v19.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/gencode.vM8.chromsizes.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/gff_example1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/gff_example1.gff3.gz -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/glimmer_nokeyval.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/gms2_example.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/hybrid1.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/intro_docs_example.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/issue167.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/issue174.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/issue_197.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/jgi_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/keep-order-test.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/keyval_sep_in_attrs.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/mouse_extra_comma.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/ncbi_gff3.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/nonascii -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/random-chr.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/sharr.gtf -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/synthetic.gff3 -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/unsanitized.gff -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/wormbase_gff2.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/data/wormbase_gff2_alt.txt -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/data
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/attr_test_cases.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/conftest.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/expected.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/feature_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/helpers_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/parser_test.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/performance_evaluation.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/synth_test_base.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_1.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_cli.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_issues.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_merge.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/test/test_merge_all.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/scripts
creating /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/scripts/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/scripts/__pycache__/gffutils-flybase-convert.cpython-313.pyc -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/scripts/__pycache__
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/scripts/gffutils-flybase-convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/scripts
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/__init__.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/attributes.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/bins.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/biopython_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/constants.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/convert.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/create.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/exceptions.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/gffwriter.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/inspect.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/interface.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/iterators.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/merge_criteria.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/parser.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/pybedtools_integration.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/version.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/feature.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
copying /build/reproducible-path/python-gffutils-0.13/.pybuild/cpython3_3.13_gffutils/build/gffutils/helpers.py -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/attr_test_cases.py to attr_test_cases.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/conftest.py to conftest.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/expected.py to expected.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/feature_test.py to feature_test.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/helpers_test.py to helpers_test.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/parser_test.py to parser_test.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/performance_evaluation.py to performance_evaluation.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/synth_test_base.py to synth_test_base.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/test_1.py to test_1.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/test_biopython_integration.py to test_biopython_integration.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/test_cli.py to test_cli.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/test_issues.py to test_issues.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/test_iterators.py to test_iterators.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/test_merge.py to test_merge.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/test/test_merge_all.py to test_merge_all.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/scripts/gffutils-flybase-convert.py to gffutils-flybase-convert.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/attributes.py to attributes.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/bins.py to bins.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/biopython_integration.py to biopython_integration.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/constants.py to constants.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/convert.py to convert.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/create.py to create.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/exceptions.py to exceptions.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/gffwriter.py to gffwriter.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/inspect.py to inspect.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/interface.py to interface.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/iterators.py to iterators.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/merge_criteria.py to merge_criteria.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/parser.py to parser.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/pybedtools_integration.py to pybedtools_integration.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/version.py to version.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/feature.py to feature.cpython-313.pyc
byte-compiling /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils/helpers.py to helpers.cpython-313.pyc
running install_egg_info
running egg_info
writing gffutils.egg-info/PKG-INFO
writing dependency_links to gffutils.egg-info/dependency_links.txt
writing requirements to gffutils.egg-info/requires.txt
writing top-level names to gffutils.egg-info/top_level.txt
reading manifest file 'gffutils.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.rst' under directory 'docs/source'
warning: no files found matching '*.py' under directory 'docs/source'
warning: no files found matching '*' under directory 'docs/source/images'
warning: no files found matching 'docs/Makefile'
warning: no files found matching 'docs/make.bat'
warning: no files found matching 'gffutils/test/data/__init__.py'
warning: no files found matching 'gffutils/test/data/t.py'
adding license file 'LICENSE'
writing manifest file 'gffutils.egg-info/SOURCES.txt'
Copying gffutils.egg-info to /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/lib/python3.13/dist-packages/gffutils-0.13.egg-info
Skipping SOURCES.txt
running install_scripts
copying build/scripts-3.13/gffutils-cli -> /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin
changing mode of /build/reproducible-path/python-gffutils-0.13/debian/python3-gffutils/usr/bin/gffutils-cli to 755
   debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/python-gffutils-0.13'
dh_install
find debian -name "*.bak" -delete
find debian -name "issue_*.db" -delete
make[1]: Leaving directory '/build/reproducible-path/python-gffutils-0.13'
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   dh_installman -O--buildsystem=pybuild
   dh_python3 -O--buildsystem=pybuild
   dh_installsystemduser -O--buildsystem=pybuild
   dh_lintian -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-gffutils' in '../python3-gffutils_0.13-2_all.deb'.
 dpkg-genbuildinfo --build=binary -O../python-gffutils_0.13-2_arm64.buildinfo
 dpkg-genchanges --build=binary -O../python-gffutils_0.13-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/533445 and its subdirectories
I: Current time: Thu Feb 19 19:00:34 -12 2026
I: pbuilder-time-stamp: 1771570834
Sat Jan 18 00:37:36 UTC 2025  I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net.
Sat Jan 18 00:37:36 UTC 2025  I: Preparing to do remote build '2' on codethink03-arm64.debian.net.
Sat Jan 18 00:40:03 UTC 2025  I: Deleting $TMPDIR on codethink03-arm64.debian.net.
Sat Jan 18 00:40:03 UTC 2025  I: python-gffutils_0.13-2_arm64.changes:
Format: 1.8
Date: Fri, 17 Jan 2025 16:37:19 +0100
Source: python-gffutils
Binary: python3-gffutils
Architecture: all
Version: 0.13-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Alexandre Detiste <tchet@debian.org>
Description:
 python3-gffutils - Work with GFF and GTF files in a flexible database framework
Changes:
 python-gffutils (0.13-2) unstable; urgency=medium
 .
   * Team upload.
   * Patch-out usage of simplejson
Checksums-Sha1:
 d5b4d9f63f22d45ac7449d02d0d659c9477532bf 8571 python-gffutils_0.13-2_arm64.buildinfo
 860827466ddf03f86d495c1e9686d5d151b1dfa9 1040784 python3-gffutils_0.13-2_all.deb
Checksums-Sha256:
 5483592254f4bc8ba57d92e1c6452f5bff04adde0f56b17085e730ef8d66e7ab 8571 python-gffutils_0.13-2_arm64.buildinfo
 5af0bae37744b79ccb5b31aca4b686fb8bbd392755500791849df29f6c3b79f5 1040784 python3-gffutils_0.13-2_all.deb
Files:
 6520ff8146fad92bd0de1d4ed384348c 8571 science optional python-gffutils_0.13-2_arm64.buildinfo
 115f29a69441439bdc843eb83cf07787 1040784 science optional python3-gffutils_0.13-2_all.deb
Sat Jan 18 00:40:04 UTC 2025  I: diffoscope 284 will be used to compare the two builds:
Running as unit: rb-diffoscope-arm64_14-78692.service
# Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/python-gffutils_0.13-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/python-gffutils_0.13-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/python-gffutils_0.13-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/b1/python-gffutils_0.13-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.TZnb4hIx/b2/python-gffutils_0.13-2_arm64.changes

## command (total time: 0.000s)
       0.000s      1 call     cmp (internal)

## has_same_content_as (total time: 0.000s)
       0.000s      1 call     abc.DotChangesFile

## main (total time: 0.338s)
       0.338s      2 calls    outputs
       0.000s      1 call     cleanup

## recognizes (total time: 0.026s)
       0.026s     12 calls    diffoscope.comparators.binary.FilesystemFile

## specialize (total time: 0.000s)
       0.000s      1 call     specialize
Finished with result: success
Main processes terminated with: code=exited/status=0
Service runtime: 629ms
CPU time consumed: 630ms
Sat Jan 18 00:40:06 UTC 2025  I: diffoscope 284 found no differences in the changes files, and a .buildinfo file also exists.
Sat Jan 18 00:40:06 UTC 2025  I: python-gffutils from unstable built successfully and reproducibly on arm64.
Sat Jan 18 00:40:07 UTC 2025  I: Submitting .buildinfo files to external archives:
Sat Jan 18 00:40:07 UTC 2025  I: Submitting 12K	b1/python-gffutils_0.13-2_arm64.buildinfo.asc
Sat Jan 18 00:40:08 UTC 2025  I: Submitting 12K	b2/python-gffutils_0.13-2_arm64.buildinfo.asc
Sat Jan 18 00:40:09 UTC 2025  I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Sat Jan 18 00:40:09 UTC 2025  I: Done submitting .buildinfo files.
Sat Jan 18 00:40:09 UTC 2025  I: Removing signed python-gffutils_0.13-2_arm64.buildinfo.asc files:
removed './b1/python-gffutils_0.13-2_arm64.buildinfo.asc'
removed './b2/python-gffutils_0.13-2_arm64.buildinfo.asc'