Wed May 15 05:10:01 UTC 2024 I: starting to build python-dendropy/unstable/arm64 on jenkins on '2024-05-15 05:09' Wed May 15 05:10:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_7/17210/console.log Wed May 15 05:10:01 UTC 2024 I: Downloading source for unstable/python-dendropy=4.6.1-1 --2024-05-15 05:10:01-- http://deb.debian.org/debian/pool/main/p/python-dendropy/python-dendropy_4.6.1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2147 (2.1K) [text/prs.lines.tag] Saving to: ‘python-dendropy_4.6.1-1.dsc’ 0K .. 100% 311M=0s 2024-05-15 05:10:01 (311 MB/s) - ‘python-dendropy_4.6.1-1.dsc’ saved [2147/2147] Wed May 15 05:10:01 UTC 2024 I: python-dendropy_4.6.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-dendropy Binary: python3-dendropy, sumtrees Architecture: all Version: 4.6.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://dendropy.org/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-dendropy Vcs-Git: https://salsa.debian.org/med-team/python-dendropy.git Testsuite: autopkgtest, autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools Package-List: python3-dendropy deb python optional arch=all sumtrees deb python optional arch=all Checksums-Sha1: bf6cf64afb9aa3a38f262505849db4dc5d40e3b5 7716628 python-dendropy_4.6.1.orig.tar.xz 7fe967b05d72e5916a9a15354b59a2367a962995 10492 python-dendropy_4.6.1-1.debian.tar.xz Checksums-Sha256: 095c860fd92097b05fac590a12fc032b3107513d57a46edf1e8f436742eafe0a 7716628 python-dendropy_4.6.1.orig.tar.xz 33eb7a91c1159952a58ef3ec059ace0999b5bb45c95a1acfffdb36524781ace7 10492 python-dendropy_4.6.1-1.debian.tar.xz Files: 764a41d5c22a7282b95ad737ee8a12c0 7716628 python-dendropy_4.6.1.orig.tar.xz 75c0002b0bd8b8df7ac3ccc674c8c255 10492 python-dendropy_4.6.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVBMjMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE/eA/+P+Hj/NcjOI7q2XiU+RVte4IuwzLKHOKA 3OHgCGozABYgONv1OnCwy2N57sQfiRfKMiktAk3U6PaSQ6lePdTDMZBHLRH3k0i8 WaxA/eTq0IRuBVisdzE7wTPv8LlHdewtNOMuDQPUMWvCfCu2HqzU0ZGiykWmsCXZ RPLzGXbzFu7nQ4rOgTPj+2N0xql2BVQaZXUC/Mv4R2+JR2n5+BfDY424IB1VV1rh hIfMiu760zfnGI3K36qle/UKV3sYPkR1Xyqba/eVoKGRuKxaHnBYNbKi1E/+9GHk u8mAcgClx1vMe5fICrTZLNFKbnJ1MtmARkNhocFP46aFp0ivjMSsN1t/kbWnGwZj CdNtyBXJcJOj/xVJOwBAIfr0cEo/RDhX9/pYxvIe6Kc0DQHdwgwxn+L5hUQjoCPh CleSPGpszGpAy6p+BDMAWfxvJ/sbTOFgFZSVZm1EZOt9BRU81CpPJy+cBAZWk535 Fc8E6SjKM68VKCqX+kqJFBrcQ1OlVHZfJt4W++bFsC6k3RfqnJWvZsglnQF5/nGQ qJBp4D2d0B1OBYOUjDIvTl3O6p/1JAocjzdQWomHboWeie3pht/CQO8A3PmkwwY8 YfHiI/jt8XrlIwEnJw3NSc9hI1YrV0x2qel2v1TCObemMZUIGbtksoxbK/zu1FS/ EzgPWtqwcD0= =q1Bm -----END PGP SIGNATURE----- Wed May 15 05:10:01 UTC 2024 I: Checking whether the package is not for us Wed May 15 05:10:01 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Wed May 15 05:10:01 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Wed May 15 05:10:44 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 14 17:10:03 -12 2024 I: pbuilder-time-stamp: 1715749803 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dendropy_4.6.1-1.dsc] I: copying [./python-dendropy_4.6.1.orig.tar.xz] I: copying [./python-dendropy_4.6.1-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Oct 31 16:58:27 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-dendropy_4.6.1-1.dsc: no acceptable signature found dpkg-source: info: extracting python-dendropy in python-dendropy-4.6.1 dpkg-source: info: unpacking python-dendropy_4.6.1.orig.tar.xz dpkg-source: info: unpacking python-dendropy_4.6.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_try_running_non-existing_testsuite.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/347483/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5f84028d6ce048189a132737bb8ae85b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='347483' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IQtfGuNo/pbuilderrc_L7Vb --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IQtfGuNo/b1 --logfile b1/build.log python-dendropy_4.6.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-21-cloud-arm64 #1 SMP Debian 6.1.90-1 (2024-05-03) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 13 07:42 /bin -> usr/bin I: user script /srv/workspace/pbuilder/347483/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 53 newly installed, 0 to remove and 0 not upgraded. Need to get 30.6 MB of archives. After unpacking 131 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.11-minimal arm64 3.11.9-1 [813 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.11-minimal arm64 3.11.9-1 [1767 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.11.8-1 [26.3 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-4 [157 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libpython3.11-stdlib arm64 3.11.9-1 [1775 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 python3.11 arm64 3.11.9-1 [602 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.11.8-1 [9332 B] Get: 13 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.11.8-1 [27.4 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.3-1 [802 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.3-1 [1931 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-4 [1130 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.1-1 [93.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-2 [36.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.12.1-1 [1394 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.15.3 [88.0 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get: 38 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1+b1 [187 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.15.3 [901 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 68.1.2-2 [241 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 python3-lib2to3 all 3.12.3-1 [77.6 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 python3-distutils all 3.12.3-1 [131 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 68.1.2-2 [468 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240422 [107 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.3-1 [1889 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.3-1 [659 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.11.8-1 [1056 B] Fetched 30.6 MB in 0s (132 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19744 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.9-1_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.9-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.2-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.9-1_arm64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:arm64 (3.11.9-1) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20060 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_arm64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../5-libreadline8t64_8.2-4_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-4) ... Selecting previously unselected package libpython3.11-stdlib:arm64. Preparing to unpack .../6-libpython3.11-stdlib_3.11.9-1_arm64.deb ... Unpacking libpython3.11-stdlib:arm64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../7-python3.11_3.11.9-1_arm64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../8-libpython3-stdlib_3.11.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21052 files and directories currently installed.) Preparing to unpack .../00-python3_3.11.8-1_arm64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../01-libpython3.12-minimal_3.12.3-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../02-python3.12-minimal_3.12.3-1_arm64.deb ... Unpacking python3.12-minimal (3.12.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... 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Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-1+b1) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed May 15 05:10:21 UTC 2024. Universal Time is now: Wed May 15 05:10:21 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.21-14) ... Setting up autoconf (2.71-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libsub-override-perl (0.10-1) ... Setting up netbase (6.4) ... Setting up readline-common (8.2-4) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... 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Setting up python3-all (3.11.8-1) ... Setting up dh-python (6.20240422) ... Processing triggers for libc-bin (2.38-11) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-dendropy-4.6.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dendropy_4.6.1-1_source.changes dpkg-buildpackage: info: source package python-dendropy dpkg-buildpackage: info: source version 4.6.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running clean removing '/build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.11 setup.py clean -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running clean removing '/build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running config I: pybuild base:311: python3.11 setup.py config -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running build running build_py creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy copying src/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy copying src/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility copying src/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate copying src/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model copying src/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy copying src/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop copying src/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio copying src/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate copying src/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/libexec creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel running egg_info creating src/DendroPy.egg-info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build creating build/scripts-3.12 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.12 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.12 copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.12 changing mode of build/scripts-3.12/sumtrees.py from 644 to 755 changing mode of build/scripts-3.12/sumlabels.py from 644 to 755 changing mode of build/scripts-3.12/dendropy-format from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running build running build_py creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy copying src/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy copying src/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility copying src/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate copying src/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model copying src/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib copying src/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy copying src/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop copying src/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel copying src/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio copying src/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate copying src/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec copying src/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec creating /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel copying src/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.11 copying and adjusting applications/sumtrees/sumtrees.py -> build/scripts-3.11 copying and adjusting applications/sumlabels/sumlabels.py -> build/scripts-3.11 copying and adjusting applications/dendropy-format/dendropy-format -> build/scripts-3.11 changing mode of build/scripts-3.11/sumtrees.py from 644 to 755 changing mode of build/scripts-3.11/sumlabels.py from 644 to 755 changing mode of build/scripts-3.11/dendropy-format from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py test -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. /usr/lib/python3/dist-packages/setuptools/command/test.py:193: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! ir_d = dist.fetch_build_eggs(dist.install_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! tr_d = dist.fetch_build_eggs(dist.tests_require or []) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! er_d = dist.fetch_build_eggs( WARNING: The wheel package is not available. running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_ext ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN I: pybuild base:311: python3.11 setup.py test -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running test WARNING: Testing via this command is deprecated and will be removed in a future version. Users looking for a generic test entry point independent of test runner are encouraged to use tox. /usr/lib/python3/dist-packages/setuptools/command/test.py:193: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! ir_d = dist.fetch_build_eggs(dist.install_requires) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:194: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! tr_d = dist.fetch_build_eggs(dist.tests_require or []) WARNING: The wheel package is not available. /usr/lib/python3/dist-packages/setuptools/command/test.py:195: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! er_d = dist.fetch_build_eggs( WARNING: The wheel package is not available. running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_ext ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12 creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.12_dendropy/build/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/combinatorics.py to combinatorics.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/mathfn.py to mathfn.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/popgenstat.py to popgenstat.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/probability.py to probability.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/profiledistance.py to profiledistance.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/statistics.py to statistics.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treecompare.py to treecompare.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treemeasure.py to treemeasure.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treescore.py to treescore.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/calculate/treesum.py to treesum.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/fastareader.py to fastareader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/fastawriter.py to fastawriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/ioservice.py to ioservice.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/multiphylipreader.py to multiphylipreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newick.py to newick.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newickreader.py to newickreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newickwriter.py to newickwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/newickyielder.py to newickyielder.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexmlreader.py to nexmlreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexusreader.py to nexusreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexuswriter.py to nexuswriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/nexusyielder.py to nexusyielder.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/phylipreader.py to phylipreader.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/phylipwriter.py to phylipwriter.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/tokenizer.py to tokenizer.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_bipartition.py to _bipartition.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_edge.py to _edge.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_node.py to _node.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treemodel/_tree.py to _tree.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/basemodel.py to basemodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/ape.py to ape.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/biopython.py to biopython.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/entrez.py to entrez.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/ete.py to ete.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/gbif.py to gbif.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/genbank.py to genbank.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/itol.py to itol.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/muscle.py to muscle.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/paup.py to paup.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/raxml.py to raxml.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/rspr.py to rspr.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/rstats.py to rstats.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/interop/seqgen.py to seqgen.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/coalescent.py to coalescent.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/continuous.py to continuous.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/ncbi.py to ncbi.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/popgensim.py to popgensim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/popgenstat.py to popgenstat.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/reconcile.py to reconcile.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/seqmodel.py to seqmodel.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/seqsim.py to seqsim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treecalc.py to treecalc.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treemanip.py to treemanip.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treesim.py to treesim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treesplit.py to treesplit.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/legacy/treesum.py to treesum.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/mathfn.py to mathfn.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/probability.py to probability.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/mathlib/statistics.py to statistics.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/birthdeath.py to birthdeath.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/coalescent.py to coalescent.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/continuous.py to continuous.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/discrete.py to discrete.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/parsimony.py to parsimony.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/protractedspeciation.py to protractedspeciation.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/reconcile.py to reconcile.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/model/treeshape.py to treeshape.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/charsim.py to charsim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/popgensim.py to popgensim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/simulate/treesim.py to treesim.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/libexec/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/bibtex.py to bibtex.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/bitprocessing.py to bitprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/cli.py to cli.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/constants.py to constants.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/container.py to container.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/debug.py to debug.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/deprecate.py to deprecate.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/error.py to error.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/filesys.py to filesys.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/messaging.py to messaging.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/metavar.py to metavar.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/processio.py to processio.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/terminal.py to terminal.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/textprocessing.py to textprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/timeprocessing.py to timeprocessing.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/urlio.py to urlio.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/utility/vcsinfo.py to vcsinfo.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/dendropy/__main__.py to __main__.cpython-312.pyc running install_egg_info Copying src/DendroPy.egg-info to /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.12/dist-packages/DendroPy-4.6.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.12/dendropy-format -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.12/sumlabels.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.12/sumtrees.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/dendropy-format to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumlabels.py to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumtrees.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy -setup.py: DendroPy version 4.6.1 -setup.py: using setuptools ('/usr/lib/python3/dist-packages/setuptools/__init__.py') -setup.py: searching for packages -setup.py: packages identified: - dendropy - dendropy.utility - dendropy.simulate - dendropy.model - dendropy.mathlib - dendropy.legacy - dendropy.interop - dendropy.datamodel - dendropy.dataio - dendropy.calculate - dendropy.utility.libexec - dendropy.datamodel.treemodel -setup.py: scripts identified: - applications/sumtrees/sumtrees.py - applications/sumlabels/sumlabels.py - applications/dendropy-format/dendropy-format -setup.py: setuptools command extensions are available running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing src/DendroPy.egg-info/PKG-INFO writing dependency_links to src/DendroPy.egg-info/dependency_links.txt writing requirements to src/DendroPy.egg-info/requires.txt writing top-level names to src/DendroPy.egg-info/top_level.txt reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'doc/Makefile' warning: no files found matching '*' under directory 'doc/source' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.gitignore' found anywhere in distribution warning: no previously-included files matching '.gitattributes' found anywhere in distribution warning: no previously-included files matching '.idea' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution adding license file 'LICENSE.rst' adding license file 'AUTHORS.rst' writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11 creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/combinatorics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/phylogeneticdistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/profiledistance.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treecompare.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treemeasure.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treescore.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/calculate/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/fastareader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/fastawriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/ioservice.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/multiphylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newick.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newickreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newickwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/newickyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexmlreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexmlwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexmlyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexusprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexusreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexuswriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/nexusyielder.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/phylipreader.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/phylipwriter.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/tokenizer.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/dataio/xmlprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel/_bipartition.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel/_edge.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel/_node.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treemodel/_tree.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/basemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/charmatrixmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/charstatemodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/datasetmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/taxonmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/datamodel/treecollectionmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/ape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/biopython.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/entrez.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/ete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/gbif.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/genbank.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/itol.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/muscle.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/paup.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/raxml.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/rspr.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/rstats.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/interop/seqgen.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/ncbi.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/popgenstat.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/seqmodel.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/seqsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treecalc.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treemanip.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treesplit.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/legacy/treesum.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/mathfn.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/probability.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/mathlib/statistics.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/birthdeath.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/coalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/continuous.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/discrete.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/multispeciescoalescent.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/parsimony.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/protractedspeciation.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/reconcile.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/model/treeshape.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/charsim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/popgensim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/simulate/treesim.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility creating /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/libexec copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/libexec/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/libexec copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/bibtex.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/bitprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/cli.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/constants.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/container.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/debug.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/deprecate.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/error.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/filesys.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/messaging.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/metavar.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/processio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/terminal.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/textprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/timeprocessing.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/urlio.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/utility/vcsinfo.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/__init__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy copying /build/reproducible-path/python-dendropy-4.6.1/.pybuild/cpython3_3.11_dendropy/build/dendropy/__main__.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/combinatorics.py to combinatorics.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/mathfn.py to mathfn.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/phylogeneticdistance.py to phylogeneticdistance.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/popgenstat.py to popgenstat.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/probability.py to probability.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/profiledistance.py to profiledistance.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/statistics.py to statistics.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treecompare.py to treecompare.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treemeasure.py to treemeasure.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treescore.py to treescore.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/calculate/treesum.py to treesum.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/fastareader.py to fastareader.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/fastawriter.py to fastawriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/ioservice.py to ioservice.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/multiphylipreader.py to multiphylipreader.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newick.py to newick.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newickreader.py to newickreader.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newickwriter.py to newickwriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/newickyielder.py to newickyielder.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexmlreader.py to nexmlreader.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexmlwriter.py to nexmlwriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexmlyielder.py to nexmlyielder.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexusprocessing.py to nexusprocessing.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexusreader.py to nexusreader.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexuswriter.py to nexuswriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/nexusyielder.py to nexusyielder.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/phylipreader.py to phylipreader.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/phylipwriter.py to phylipwriter.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/tokenizer.py to tokenizer.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/dataio/xmlprocessing.py to xmlprocessing.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel/_bipartition.py to _bipartition.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel/_edge.py to _edge.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel/_node.py to _node.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treemodel/_tree.py to _tree.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/basemodel.py to basemodel.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/charmatrixmodel.py to charmatrixmodel.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/charstatemodel.py to charstatemodel.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/datasetmodel.py to datasetmodel.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/taxonmodel.py to taxonmodel.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/datamodel/treecollectionmodel.py to treecollectionmodel.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/ape.py to ape.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/biopython.py to biopython.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/entrez.py to entrez.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/ete.py to ete.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/gbif.py to gbif.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/genbank.py to genbank.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/itol.py to itol.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/muscle.py to muscle.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/paup.py to paup.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/raxml.py to raxml.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/rspr.py to rspr.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/rstats.py to rstats.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/interop/seqgen.py to seqgen.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/coalescent.py to coalescent.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/continuous.py to continuous.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/ncbi.py to ncbi.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/popgensim.py to popgensim.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/popgenstat.py to popgenstat.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/reconcile.py to reconcile.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/seqmodel.py to seqmodel.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/seqsim.py to seqsim.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treecalc.py to treecalc.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treemanip.py to treemanip.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treesim.py to treesim.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treesplit.py to treesplit.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/legacy/treesum.py to treesum.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/mathfn.py to mathfn.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/probability.py to probability.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/mathlib/statistics.py to statistics.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/birthdeath.py to birthdeath.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/coalescent.py to coalescent.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/continuous.py to continuous.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/discrete.py to discrete.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/multispeciescoalescent.py to multispeciescoalescent.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/parsimony.py to parsimony.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/protractedspeciation.py to protractedspeciation.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/reconcile.py to reconcile.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/model/treeshape.py to treeshape.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/charsim.py to charsim.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/popgensim.py to popgensim.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/simulate/treesim.py to treesim.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/libexec/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/bibtex.py to bibtex.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/bitprocessing.py to bitprocessing.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/cli.py to cli.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/constants.py to constants.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/container.py to container.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/debug.py to debug.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/deprecate.py to deprecate.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/error.py to error.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/filesys.py to filesys.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/messaging.py to messaging.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/metavar.py to metavar.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/processio.py to processio.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/terminal.py to terminal.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/textprocessing.py to textprocessing.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/timeprocessing.py to timeprocessing.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/urlio.py to urlio.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/utility/vcsinfo.py to vcsinfo.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/__init__.py to __init__.cpython-311.pyc byte-compiling /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/dendropy/__main__.py to __main__.cpython-311.pyc running install_egg_info Copying src/DendroPy.egg-info to /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/lib/python3.11/dist-packages/DendroPy-4.6.1.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.11/dendropy-format -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.11/sumlabels.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin copying build/scripts-3.11/sumtrees.py -> /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/dendropy-format to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumlabels.py to 755 changing mode of /build/reproducible-path/python-dendropy-4.6.1/debian/python3-dendropy/usr/bin/sumtrees.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-dendropy-4.6.1' dh_install mkdir -p debian/sumtrees/usr/bin mv debian/python3-dendropy/usr/bin/sumtrees.py debian/sumtrees/usr/bin/sumtrees cp applications/dendropy-format/dendropy-format debian/sumtrees/usr/bin/dendropy-format rm -rf debian/python3-dendropy/usr/bin make[1]: Leaving directory '/build/reproducible-path/python-dendropy-4.6.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:113: replacing shebang in debian/sumtrees/usr/bin/dendropy-format dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-dendropy: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package sumtrees: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dendropy' in '../python3-dendropy_4.6.1-1_all.deb'. dpkg-deb: building package 'sumtrees' in '../sumtrees_4.6.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-dendropy_4.6.1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../python-dendropy_4.6.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/347483 and its subdirectories I: Current time: Tue May 14 17:10:42 -12 2024 I: pbuilder-time-stamp: 1715749842 Wed May 15 05:10:45 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Wed May 15 05:10:45 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Wed May 15 05:11:58 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Wed May 15 05:11:59 UTC 2024 I: python-dendropy_4.6.1-1_arm64.changes: Format: 1.8 Date: Fri, 27 Oct 2023 19:11:12 +0700 Source: python-dendropy Binary: python3-dendropy sumtrees Architecture: all Version: 4.6.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: python3-dendropy - DendroPy Phylogenetic Computing Library (Python 3) sumtrees - Phylogenetic Tree Summarization and Annotation Closes: 1049497 Changes: python-dendropy (4.6.1-1) unstable; urgency=medium . [ Lance Lin ] * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * d/rules: Copy file for successful consecutive builds (Closes: #1049497) * d/copyright: Update year to 2023 for debian files * d/patches: Add not-needed to Forwarded field for patch * d/source/lintian-overrides: Ignore very long line length for data files . [ Andreas Tille ] * Remove unneeded debian/source/include-binaries Checksums-Sha1: a807bde75406ab4b63561bfc8719cd029dd96b79 5796 python-dendropy_4.6.1-1_arm64.buildinfo f8c4920871c5f1065cbc1870665295b5f9682e83 276760 python3-dendropy_4.6.1-1_all.deb d708ea0d74fc5c2e2d2633867aac793e0035ea25 184572 sumtrees_4.6.1-1_all.deb Checksums-Sha256: aa81ba15152cc262f7ee8b1f39ddf40075dc1229bac38507f6894e5d9d25f381 5796 python-dendropy_4.6.1-1_arm64.buildinfo 6bc46b0a97e684b90d8500db84eb8b0e21927f6eb82188f2a7e5d9eed1e691f1 276760 python3-dendropy_4.6.1-1_all.deb 6209ffe6ac92cd1a0317939a8ce293a6816a15cd5aedf9f6d1ec416b7de50e25 184572 sumtrees_4.6.1-1_all.deb Files: af9aa9cb92aec630df4d5f46dd9733f3 5796 python optional python-dendropy_4.6.1-1_arm64.buildinfo bcf51e274b611bf0a2da04f5bfb51f6b 276760 python optional python3-dendropy_4.6.1-1_all.deb c9fca40e14762ed7c5e16e0df9a562ac 184572 python optional sumtrees_4.6.1-1_all.deb Wed May 15 05:12:00 UTC 2024 I: diffoscope 266 will be used to compare the two builds: Running as unit: rb-diffoscope-arm64_7-17210.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.IQtfGuNo/python-dendropy_4.6.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.IQtfGuNo/python-dendropy_4.6.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.IQtfGuNo/python-dendropy_4.6.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.IQtfGuNo/b1/python-dendropy_4.6.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.IQtfGuNo/b2/python-dendropy_4.6.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.428s) 0.428s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 805ms CPU time consumed: 806ms Wed May 15 05:12:01 UTC 2024 I: diffoscope 266 found no differences in the changes files, and a .buildinfo file also exists. Wed May 15 05:12:01 UTC 2024 I: python-dendropy from unstable built successfully and reproducibly on arm64. Wed May 15 05:12:03 UTC 2024 I: Submitting .buildinfo files to external archives: Wed May 15 05:12:03 UTC 2024 I: Submitting 8.0K b1/python-dendropy_4.6.1-1_arm64.buildinfo.asc Wed May 15 05:12:03 UTC 2024 I: Submitting 8.0K b2/python-dendropy_4.6.1-1_arm64.buildinfo.asc Wed May 15 05:12:04 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed May 15 05:12:04 UTC 2024 I: Done submitting .buildinfo files. Wed May 15 05:12:04 UTC 2024 I: Removing signed python-dendropy_4.6.1-1_arm64.buildinfo.asc files: removed './b1/python-dendropy_4.6.1-1_arm64.buildinfo.asc' removed './b2/python-dendropy_4.6.1-1_arm64.buildinfo.asc'